RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 APPBP2Q92624 585 aa14.41□□□□□ -0.1
VPS13D-204ENST00000469054 RILPL2Q969X0 211 aa14.41□□□□□ -0.1
VPS13D-204ENST00000469054 PUS7LQ9H0K6 701 aaKnown RBP14.41□□□□□ -0.1
VPS13D-204ENST00000469054 RPAP1Q9BWH6 1393 aaPredicted RBP14.4□□□□□ -0.1
VPS13D-204ENST00000469054 PPP1R12BO60237 982 aaPredicted RBP14.4□□□□□ -0.1
VPS13D-204ENST00000469054 MBD4O95243 580 aa14.4□□□□□ -0.1
VPS13D-204ENST00000469054 TTLL12Q14166 644 aaPredicted RBP14.4□□□□□ -0.1
VPS13D-204ENST00000469054 SAPCD2Q86UD0 394 aa14.4□□□□□ -0.1
VPS13D-204ENST00000469054 LCORLQ8N3X6 602 aa14.4□□□□□ -0.1
VPS13D-204ENST00000469054 OSBP2Q969R2 916 aa14.4□□□□□ -0.1
VPS13D-204ENST00000469054 AIDAQ96BJ3 306 aa14.4□□□□□ -0.1
VPS13D-204ENST00000469054 OSBPL5Q9H0X9 879 aaPredicted RBP14.4□□□□□ -0.1
VPS13D-204ENST00000469054 ARMT1Q9H993 441 aa14.4□□□□□ -0.1
VPS13D-204ENST00000469054 ABT1Q9ULW3 272 aaKnown RBP14.4□□□□□ -0.1
VPS13D-204ENST00000469054 TLL2Q9Y6L7 1015 aa14.4□□□□□ -0.1
VPS13D-204ENST00000469054 MYH2Q9UKX2 1941 aa14.4□□□□□ -0.1
VPS13D-204ENST00000469054 DDTLA6NHG4 134 aaPredicted RBP14.39□□□□□ -0.11
VPS13D-204ENST00000469054 GSPT1P15170 499 aaKnown RBP14.39□□□□□ -0.11
VPS13D-204ENST00000469054 USP5P45974 858 aa14.39□□□□□ -0.11
VPS13D-204ENST00000469054 PRKG1Q13976 671 aa14.39□□□□□ -0.11
VPS13D-204ENST00000469054 ZMYM1Q5SVZ6 1142 aa14.39□□□□□ -0.11
VPS13D-204ENST00000469054 SH3BP5LQ7L8J4 393 aa14.39□□□□□ -0.11
VPS13D-204ENST00000469054 ARMC9Q7Z3E5 817 aa14.39□□□□□ -0.11
VPS13D-204ENST00000469054 MAPKAPK5Q8IW41 473 aa14.39□□□□□ -0.11
VPS13D-204ENST00000469054 ZSCAN29Q8IWY8 852 aaPredicted RBP14.39□□□□□ -0.11
VPS13D-204ENST00000469054 HOOK2Q96ED9 719 aa14.39□□□□□ -0.11
VPS13D-204ENST00000469054 CRNKL1Q9BZJ0 848 aaKnown RBP14.39□□□□□ -0.11
VPS13D-204ENST00000469054 FLT1P17948 1338 aa14.39□□□□□ -0.11
VPS13D-204ENST00000469054 POLR2AP24928 1970 aaKnown RBP14.38□□□□□ -0.11
VPS13D-204ENST00000469054 MAST2Q6P0Q8 1798 aa14.38□□□□□ -0.11
VPS13D-204ENST00000469054 ATXN8OSP0DMR3 200 aa14.38□□□□□ -0.11
VPS13D-204ENST00000469054 HUNKP57058 714 aa14.38□□□□□ -0.11
VPS13D-204ENST00000469054 MAP3K11Q16584 847 aa14.38□□□□□ -0.11
VPS13D-204ENST00000469054 MOB2Q70IA6 237 aa14.38□□□□□ -0.11
VPS13D-204ENST00000469054 SKAP1Q86WV1 359 aa14.38□□□□□ -0.11
VPS13D-204ENST00000469054 CSRNP1Q96S65 589 aa14.38□□□□□ -0.11
VPS13D-204ENST00000469054 STRBPQ96SI9 672 aaKnown RBP14.38□□□□□ -0.11
VPS13D-204ENST00000469054 ANGEL1Q9UNK9 670 aaKnown RBP14.38□□□□□ -0.11
VPS13D-204ENST00000469054 FZD1Q9UP38 647 aa14.38□□□□□ -0.11
VPS13D-204ENST00000469054 DOCK2Q92608 1830 aa14.38□□□□□ -0.11
VPS13D-204ENST00000469054 ATRNL1Q5VV63 1379 aa14.37□□□□□ -0.11
VPS13D-204ENST00000469054 RASSF10A6NK89 507 aa14.37□□□□□ -0.11
VPS13D-204ENST00000469054 UBE2Q2LH0YL09 131 aa14.37□□□□□ -0.11
VPS13D-204ENST00000469054 USP2O75604 605 aaPredicted RBP14.37□□□□□ -0.11
VPS13D-204ENST00000469054 SDSP20132 328 aa14.37□□□□□ -0.11
VPS13D-204ENST00000469054 IREB2P48200 963 aaKnown RBP14.37□□□□□ -0.11
VPS13D-204ENST00000469054 DCAF15Q66K64 600 aa14.37□□□□□ -0.11
VPS13D-204ENST00000469054 MIGA2Q7L4E1 593 aa14.37□□□□□ -0.11
VPS13D-204ENST00000469054 SDR42E1Q8WUS8 393 aa14.37□□□□□ -0.11
VPS13D-204ENST00000469054 HHIPL1Q96JK4 782 aa14.37□□□□□ -0.11
VPS13D-204ENST00000469054 SEC62Q99442 399 aaKnown RBP14.37□□□□□ -0.11
VPS13D-204ENST00000469054 DHX36Q9H2U1 1008 aaKnown RBP14.37□□□□□ -0.11
VPS13D-204ENST00000469054 MKRN1Q9UHC7 482 aaKnown RBP14.37□□□□□ -0.11
VPS13D-204ENST00000469054 SSC5DA1L4H1 1573 aa14.37□□□□□ -0.11
VPS13D-204ENST00000469054 MYO5AQ9Y4I1 1855 aaKnown RBP14.37□□□□□ -0.11
VPS13D-204ENST00000469054 ECM29Q5VYK3 1845 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 M0R2C6 588 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 GPAA1O43292 621 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 PRKAB2O43741 272 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 MAP3K10Q02779 954 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 DEFB115Q30KQ5 88 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 LDLRAD1Q5T700 205 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 KLRG1Q96E93 195 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 DCP1AQ9NPI6 582 aaPredicted RBP14.36□□□□□ -0.11
VPS13D-204ENST00000469054 HELLSQ9NRZ9 838 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 ATP8A2Q9NTI2 1148 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 PI4KBQ9UBF8 816 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 PALD1Q9ULE6 856 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 SLC4A4Q9Y6R1 1079 aa14.36□□□□□ -0.11
VPS13D-204ENST00000469054 UNCXA6NJT0 531 aa14.35□□□□□ -0.11
VPS13D-204ENST00000469054 HIP1O00291 1037 aa14.35□□□□□ -0.11
VPS13D-204ENST00000469054 TBC1D12O60347 775 aa14.35□□□□□ -0.11
VPS13D-204ENST00000469054 GNAT2P19087 354 aa14.35□□□□□ -0.11
VPS13D-204ENST00000469054 MCMDC2Q4G0Z9 681 aa14.35□□□□□ -0.11
VPS13D-204ENST00000469054 FAM227BQ96M60 508 aa14.35□□□□□ -0.11
VPS13D-204ENST00000469054 ZNF341Q9BYN7 854 aa14.35□□□□□ -0.11
VPS13D-204ENST00000469054 SAP30BPQ9UHR5 308 aaKnown RBP14.35□□□□□ -0.11
VPS13D-204ENST00000469054 COL2A1P02458 1487 aaPredicted RBP14.35□□□□□ -0.11
VPS13D-204ENST00000469054 A0A0D9SFI3 127 aa14.34□□□□□ -0.11
VPS13D-204ENST00000469054 HLA-DOAP06340 250 aa14.34□□□□□ -0.11
VPS13D-204ENST00000469054 DSG3P32926 999 aa14.34□□□□□ -0.11
VPS13D-204ENST00000469054 MAP3K9P80192 1104 aa14.34□□□□□ -0.11
VPS13D-204ENST00000469054 NMIQ13287 307 aaPredicted RBP14.34□□□□□ -0.11
VPS13D-204ENST00000469054 RGMBQ6NW40 437 aa14.34□□□□□ -0.11
VPS13D-204ENST00000469054 FOXP4Q8IVH2 680 aaPredicted RBP14.34□□□□□ -0.11
VPS13D-204ENST00000469054 ANKRD13AQ8IZ07 590 aa14.34□□□□□ -0.11
VPS13D-204ENST00000469054 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.34□□□□□ -0.11
VPS13D-204ENST00000469054 DDRGK1Q96HY6 314 aa14.34□□□□□ -0.11
VPS13D-204ENST00000469054 MCM9Q9NXL9 1143 aa14.34□□□□□ -0.11
VPS13D-204ENST00000469054 ZNF112Q9UJU3 913 aa14.34□□□□□ -0.11
VPS13D-204ENST00000469054 GSG1L2A8MUP6 293 aa14.33□□□□□ -0.12
VPS13D-204ENST00000469054 POLR3DP05423 398 aaPredicted RBP14.33□□□□□ -0.12
VPS13D-204ENST00000469054 SLURP2P0DP57 97 aa14.33□□□□□ -0.12
VPS13D-204ENST00000469054 SLC4A8Q2Y0W8 1093 aa14.33□□□□□ -0.12
VPS13D-204ENST00000469054 GIMAP6Q6P9H5 292 aa14.33□□□□□ -0.12
VPS13D-204ENST00000469054 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.33□□□□□ -0.12
VPS13D-204ENST00000469054 PAXIP1Q6ZW49 1069 aaPredicted RBP14.33□□□□□ -0.12
VPS13D-204ENST00000469054 TTC6Q86TZ1 520 aa14.33□□□□□ -0.12
VPS13D-204ENST00000469054 METTL16Q86W50 562 aaKnown RBP14.33□□□□□ -0.12
VPS13D-204ENST00000469054 DNAJC5GQ8N7S2 189 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms