RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 PCDH11YQ9BZA8 1340 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 MEGF6O75095 1541 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 TMEM88BA6NKF7 163 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 EXOSC9Q06265 439 aaKnown RBP7.03□□□□□ -1.28
VPS41-211ENST00000466017 TYRO3Q06418 890 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 TEFQ10587 303 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 NAA30Q147X3 362 aaPredicted RBP7.03□□□□□ -1.28
VPS41-211ENST00000466017 FBXO41Q8TF61 875 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 ARID3AQ99856 593 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 THUMPD2Q9BTF0 503 aaKnown RBP7.03□□□□□ -1.28
VPS41-211ENST00000466017 LGR6Q9HBX8 967 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 MARK1Q9P0L2 795 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 PHF24Q9UPV7 400 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 PKD1L3Q7Z443 1732 aa7.03□□□□□ -1.28
VPS41-211ENST00000466017 NRAPQ86VF7 1730 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 DGKZQ13574 1117 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 PDE3AQ14432 1141 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 MPRIPQ6WCQ1 1025 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 BTLAQ7Z6A9 289 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 EDARADDQ8WWZ3 215 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 ARHGAP45Q92619 1136 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 CEP63Q96MT8 703 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 SLC52A2Q9HAB3 445 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 TSPYL4Q9UJ04 414 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 USP21Q9UK80 565 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 HEG1Q9ULI3 1381 aa7.02□□□□□ -1.29
VPS41-211ENST00000466017 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.01□□□□□ -1.29
VPS41-211ENST00000466017 PARP4Q9UKK3 1724 aaKnown RBP7.01□□□□□ -1.29
VPS41-211ENST00000466017 PLCH1Q4KWH8 1693 aa7.01□□□□□ -1.29
VPS41-211ENST00000466017 MAP2K3P46734 347 aa7.01□□□□□ -1.29
VPS41-211ENST00000466017 RRP1P56182 461 aaKnown RBP7.01□□□□□ -1.29
VPS41-211ENST00000466017 EIF4A1P60842 406 aaKnown RBP7.01□□□□□ -1.29
VPS41-211ENST00000466017 AAMPQ13685 434 aa7.01□□□□□ -1.29
VPS41-211ENST00000466017 RTN1Q16799 776 aa7.01□□□□□ -1.29
VPS41-211ENST00000466017 TWISTNBQ3B726 338 aaPredicted RBP7.01□□□□□ -1.29
VPS41-211ENST00000466017 TSR2Q969E8 191 aaKnown RBP7.01□□□□□ -1.29
VPS41-211ENST00000466017 BRD7Q9NPI1 651 aa7.01□□□□□ -1.29
VPS41-211ENST00000466017 SEPT3Q9UH03 358 aa7.01□□□□□ -1.29
VPS41-211ENST00000466017 TRPC5Q9UL62 973 aaPredicted RBP7.01□□□□□ -1.29
VPS41-211ENST00000466017 LRRC37A3O60309 1634 aa7.01□□□□□ -1.29
VPS41-211ENST00000466017 LRP6O75581 1613 aa7.01□□□□□ -1.29
VPS41-211ENST00000466017 BCL9O00512 1426 aa7.01□□□□□ -1.29
VPS41-211ENST00000466017 MRC1P22897 1456 aa7□□□□□ -1.29
VPS41-211ENST00000466017 BTBD11A6QL63 1104 aa7□□□□□ -1.29
VPS41-211ENST00000466017 OPLAHO14841 1288 aa7□□□□□ -1.29
VPS41-211ENST00000466017 IPO8O15397 1037 aaKnown RBP7□□□□□ -1.29
VPS41-211ENST00000466017 NEFLP07196 543 aa7□□□□□ -1.29
VPS41-211ENST00000466017 DDB1Q16531 1140 aa7□□□□□ -1.29
VPS41-211ENST00000466017 SWI5Q1ZZU3 235 aa7□□□□□ -1.29
VPS41-211ENST00000466017 FAM182BQ5T319 152 aa7□□□□□ -1.29
VPS41-211ENST00000466017 C8orf58Q8NAV2 365 aa7□□□□□ -1.29
VPS41-211ENST00000466017 C8orf37Q96NL8 207 aa7□□□□□ -1.29
VPS41-211ENST00000466017 MDFIQ99750 246 aa7□□□□□ -1.29
VPS41-211ENST00000466017 NEUROD4Q9HD90 331 aa7□□□□□ -1.29
VPS41-211ENST00000466017 CXXC1Q9P0U4 656 aaPredicted RBP7□□□□□ -1.29
VPS41-211ENST00000466017 CHMP3Q9Y3E7 222 aa7□□□□□ -1.29
VPS41-211ENST00000466017 LAS1LQ9Y4W2 734 aaKnown RBP7□□□□□ -1.29
VPS41-211ENST00000466017 KDM6AO15550 1401 aaPredicted RBP7□□□□□ -1.29
VPS41-211ENST00000466017 ATRNO75882 1429 aa7□□□□□ -1.29
VPS41-211ENST00000466017 SCN11AQ9UI33 1791 aa7□□□□□ -1.29
VPS41-211ENST00000466017 ZBTB39O15060 712 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 EPXP11678 715 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 CABP4P57796 275 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 CCDC30Q5VVM6 783 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 ZNF772Q68DY9 489 aaPredicted RBP6.99□□□□□ -1.29
VPS41-211ENST00000466017 PHLDB3Q6NSJ2 640 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 ZNF790Q6PG37 636 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 SYT9Q86SS6 491 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 TSPYL6Q8N831 410 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 SSH1Q8WYL5 1049 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 CLP1Q92989 425 aaKnown RBP6.99□□□□□ -1.29
VPS41-211ENST00000466017 BTBD6Q96KE9 485 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 TNS2Q63HR2 1409 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 AFF2P51816 1311 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 CACNA1FO60840 1977 aa6.99□□□□□ -1.29
VPS41-211ENST00000466017 SIPA1L3O60292 1781 aaPredicted RBP6.98□□□□□ -1.29
VPS41-211ENST00000466017 TNFRSF10BO14763 440 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 BCAR3O75815 825 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 ARAFP10398 606 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 INPP5BP32019 993 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 IRS1P35568 1242 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 SPEM2Q0P670 501 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 MEX3CQ5U5Q3 659 aaKnown RBP6.98□□□□□ -1.29
VPS41-211ENST00000466017 ZNF468Q5VIY5 522 aaPredicted RBP6.98□□□□□ -1.29
VPS41-211ENST00000466017 ZKSCAN2Q63HK3 967 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 LINC00114Q6XXX2 140 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 ETFBKMTQ8IXQ9 262 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 NEDD1Q8NHV4 660 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 DDX54Q8TDD1 881 aaKnown RBP6.98□□□□□ -1.29
VPS41-211ENST00000466017 MYO19Q96H55 970 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 KCNH4Q9UQ05 1017 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 KIF16BQ96L93 1317 aa6.98□□□□□ -1.29
VPS41-211ENST00000466017 FAM181BA6NEQ2 426 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 MICAL2O94851 1124 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 SNRPA1P09661 255 aaKnown RBP6.97□□□□□ -1.29
VPS41-211ENST00000466017 IDH3AP50213 366 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 KCNQ4P56696 695 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 MAP3K10Q02779 954 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 KCNMA1Q12791 1236 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 C11orf91Q3C1V1 193 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms