RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 ATP8A2Q9NTI2 1148 aa12.88□□□□□ -0.35
UBR4-208ENST00000459947 AATFQ9NY61 560 aaKnown RBP eCLIP12.88□□□□□ -0.35
UBR4-208ENST00000459947 LDLRAD1Q5T700 205 aa12.88□□□□□ -0.35
UBR4-208ENST00000459947 ZSCAN29Q8IWY8 852 aaPredicted RBP12.88□□□□□ -0.35
UBR4-208ENST00000459947 AIDAQ96BJ3 306 aa12.88□□□□□ -0.35
UBR4-208ENST00000459947 TEPSINQ96N21 525 aa12.88□□□□□ -0.35
UBR4-208ENST00000459947 ANGEL1Q9UNK9 670 aaKnown RBP12.88□□□□□ -0.35
UBR4-208ENST00000459947 MAP3K9P80192 1104 aa12.88□□□□□ -0.35
UBR4-208ENST00000459947 B4GALNT3Q6L9W6 998 aa12.88□□□□□ -0.35
UBR4-208ENST00000459947 BCL11AQ9H165 835 aa12.88□□□□□ -0.35
UBR4-208ENST00000459947 FAM198AQ9UFP1 575 aa12.88□□□□□ -0.35
UBR4-208ENST00000459947 PCDHAC2Q9Y5I4 1007 aa12.88□□□□□ -0.35
UBR4-208ENST00000459947 PI4KBQ9UBF8 816 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 TCRBV5S4A2TA0A5A2 114 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 NOL9Q5SY16 702 aaKnown RBP12.87□□□□□ -0.35
UBR4-208ENST00000459947 PAXIP1Q6ZW49 1069 aaPredicted RBP12.87□□□□□ -0.35
UBR4-208ENST00000459947 PLEKHM2Q8IWE5 1019 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 ZNF384Q8TF68 577 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 CAPNS2Q96L46 248 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 EHD4Q9H223 541 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 HELLSQ9NRZ9 838 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 PPP4R2Q9NY27 417 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 CA12O43570 354 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 SLC10A3P09131 477 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 ZBTB48P10074 688 aaPredicted RBP12.87□□□□□ -0.35
UBR4-208ENST00000459947 MAP3K10Q02779 954 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 NBPF12Q5TAG4 269 aaPredicted RBP12.87□□□□□ -0.35
UBR4-208ENST00000459947 SH3RF3Q8TEJ3 882 aaPredicted RBP12.87□□□□□ -0.35
UBR4-208ENST00000459947 TMEM39BQ9GZU3 492 aa12.87□□□□□ -0.35
UBR4-208ENST00000459947 JMYQ8N9B5 988 aa12.86□□□□□ -0.35
UBR4-208ENST00000459947 SLC10A4Q96EP9 437 aa12.86□□□□□ -0.35
UBR4-208ENST00000459947 CSRNP1Q96S65 589 aa12.86□□□□□ -0.35
UBR4-208ENST00000459947 NACAP1Q9BZK3 213 aa12.86□□□□□ -0.35
UBR4-208ENST00000459947 WDR33Q9C0J8 1336 aaKnown RBP12.86□□□□□ -0.35
UBR4-208ENST00000459947 ZNF157P51786 506 aaPredicted RBP12.86□□□□□ -0.35
UBR4-208ENST00000459947 INHBEP58166 350 aa12.86□□□□□ -0.35
UBR4-208ENST00000459947 MAP2K1Q02750 393 aaPredicted RBP12.86□□□□□ -0.35
UBR4-208ENST00000459947 RIOK1Q9BRS2 568 aaKnown RBP12.86□□□□□ -0.35
UBR4-208ENST00000459947 SREBF2Q12772 1141 aa12.86□□□□□ -0.35
UBR4-208ENST00000459947 PICALMQ13492 652 aa12.86□□□□□ -0.35
UBR4-208ENST00000459947 ZNF112Q9UJU3 913 aa12.86□□□□□ -0.35
UBR4-208ENST00000459947 FLT1P17948 1338 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 NAV1Q8NEY1 1877 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 MYO5AQ9Y4I1 1855 aaKnown RBP12.85□□□□□ -0.35
UBR4-208ENST00000459947 NT5C2P49902 561 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 SSC5DA1L4H1 1573 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 AK9Q5TCS8 1911 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 MANSC4A6NHS7 340 aaPredicted RBP12.85□□□□□ -0.35
UBR4-208ENST00000459947 MBD4O95243 580 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 CACNB3P54284 484 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 TCP10Q12799 353 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 NFIAQ12857 509 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 ZMYM1Q5SVZ6 1142 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 CRACR2BQ8N4Y2 399 aaPredicted RBP12.85□□□□□ -0.35
UBR4-208ENST00000459947 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.85□□□□□ -0.353e-24■■□□□ 11.5
UBR4-208ENST00000459947 TGFBRAP1Q8WUH2 860 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 ZNF287Q9HBT7 754 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 SWAP70Q9UH65 585 aa12.85□□□□□ -0.35
UBR4-208ENST00000459947 TRIM6-TRIM34B2RNG4 842 aa12.84□□□□□ -0.35
UBR4-208ENST00000459947 USP2O75604 605 aaPredicted RBP12.84□□□□□ -0.35
UBR4-208ENST00000459947 RUFY2Q8WXA3 655 aa12.84□□□□□ -0.35
UBR4-208ENST00000459947 BEGAINQ9BUH8 593 aa12.84□□□□□ -0.35
UBR4-208ENST00000459947 ARPP21Q9UBL0 812 aaPredicted RBP12.84□□□□□ -0.35
UBR4-208ENST00000459947 RASAL3Q86YV0 1011 aa12.84□□□□□ -0.35
UBR4-208ENST00000459947 MIGA1Q8NAN2 632 aa12.84□□□□□ -0.35
UBR4-208ENST00000459947 OTUD7AQ8TE49 926 aaPredicted RBP12.84□□□□□ -0.35
UBR4-208ENST00000459947 RAD50Q92878 1312 aa12.84□□□□□ -0.35
UBR4-208ENST00000459947 CTNND1O60716 968 aaKnown RBP12.84□□□□□ -0.35
UBR4-208ENST00000459947 OTUD7BQ6GQQ9 843 aa12.84□□□□□ -0.35
UBR4-208ENST00000459947 METTL16Q86W50 562 aaKnown RBP12.84□□□□□ -0.35
UBR4-208ENST00000459947 ERO1BQ86YB8 467 aa12.84□□□□□ -0.35
UBR4-208ENST00000459947 CDK5RAP2Q96SN8 1893 aa12.83□□□□□ -0.35
UBR4-208ENST00000459947 UBE2Q2LH0YL09 131 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 POLR3DP05423 398 aaPredicted RBP12.83□□□□□ -0.36
UBR4-208ENST00000459947 SLC3A2P08195 630 aaKnown RBP12.83□□□□□ -0.36
UBR4-208ENST00000459947 TTC22Q5TAA0 569 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 PICK1Q9NRD5 415 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 MKRN1Q9UHC7 482 aaKnown RBP12.83□□□□□ -0.36
UBR4-208ENST00000459947 NDUFB9Q9Y6M9 179 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 MYH1P12882 1939 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 ALDH1A1P00352 501 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 DYNLL1P63167 89 aaKnown RBP12.83□□□□□ -0.36
UBR4-208ENST00000459947 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.83□□□□□ -0.36
UBR4-208ENST00000459947 DIAPH3Q9NSV4 1193 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 VEGFBP49765 207 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 ADGRA1Q86SQ6 560 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 MAPKAPK5Q8IW41 473 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 DNAJC5GQ8N7S2 189 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 WNK4Q96J92 1243 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 WRNIP1Q96S55 665 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 AS3MTQ9HBK9 375 aa12.83□□□□□ -0.36
UBR4-208ENST00000459947 ZCCHC17Q9NP64 241 aaKnown RBP12.83□□□□□ -0.36
UBR4-208ENST00000459947 DDX4Q9NQI0 724 aaKnown RBP12.83□□□□□ -0.36
UBR4-208ENST00000459947 PPIL2Q13356 520 aa12.82□□□□□ -0.36
UBR4-208ENST00000459947 PPP4R3BQ5MIZ7 849 aa12.82□□□□□ -0.36
UBR4-208ENST00000459947 EDC3Q96F86 508 aaKnown RBP12.82□□□□□ -0.36
UBR4-208ENST00000459947 SLC4A4Q9Y6R1 1079 aa12.82□□□□□ -0.36
UBR4-208ENST00000459947 LAMB1P07942 1786 aa12.82□□□□□ -0.36
UBR4-208ENST00000459947 SPDYE5A6NIY4 337 aa12.82□□□□□ -0.36
UBR4-208ENST00000459947 PPATQ06203 517 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms