RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 RIC3Q7Z5B4 369 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 NRDCO43847 1150 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 PRELPP51888 382 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 ETF1P62495 437 aaKnown RBP9.9□□□□□ -0.82
HPS4-206ENST00000439453 TPTE2Q6XPS3 522 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 ZNF589Q86UQ0 364 aaPredicted RBP9.9□□□□□ -0.82
HPS4-206ENST00000439453 C7orf43Q8WVR3 580 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 UTP14AQ9BVJ6 771 aaKnown RBP9.9□□□□□ -0.82
HPS4-206ENST00000439453 NYXQ9GZU5 481 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 IFNKQ9P0W0 207 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 DNAI1Q9UI46 699 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 FOSBP53539 338 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 ST5P78524 1137 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 KRT32Q14532 448 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 MUM1L1Q5H9M0 696 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 C2CD5Q86YS7 1000 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 MNS1Q8NEH6 495 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 USP28Q96RU2 1077 aa9.9□□□□□ -0.82
HPS4-206ENST00000439453 PHLPP2Q6ZVD8 1323 aa9.9□□□□□ -0.83
HPS4-206ENST00000439453 DHX8Q14562 1220 aaKnown RBP9.89□□□□□ -0.83
HPS4-206ENST00000439453 NAA16Q6N069 864 aaPredicted RBP9.89□□□□□ -0.83
HPS4-206ENST00000439453 Q6ZUG5 572 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 SMARCC2Q8TAQ2 1214 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 FAM89AQ96GI7 184 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 ZNF396Q96N95 335 aaPredicted RBP9.89□□□□□ -0.83
HPS4-206ENST00000439453 NEK1Q96PY6 1258 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 CHMP4AQ9BY43 222 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 CCDC8Q9H0W5 538 aaPredicted RBP9.89□□□□□ -0.83
HPS4-206ENST00000439453 BOLA2Q9H3K6 86 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 ATP8B1O43520 1251 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 SEC31AO94979 1220 aaKnown RBP9.89□□□□□ -0.83
HPS4-206ENST00000439453 CCDC191Q8NCU4 936 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 EAF2Q96CJ1 260 aaPredicted RBP9.89□□□□□ -0.83
HPS4-206ENST00000439453 UBXN6Q9BZV1 441 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 CCP110O43303 1012 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 TADA3O75528 432 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 TAF5LO75529 589 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 ME1P48163 572 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 SCRN1Q12765 414 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 STYK1Q6J9G0 422 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 ZBTB38Q8NAP3 1195 aaPredicted RBP9.89□□□□□ -0.83
HPS4-206ENST00000439453 SRRTQ9BXP5 876 aaKnown RBP9.89□□□□□ -0.83
HPS4-206ENST00000439453 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.89□□□□□ -0.83
HPS4-206ENST00000439453 PSME4Q14997 1843 aa9.89□□□□□ -0.83
HPS4-206ENST00000439453 PCCAP05165 728 aaPredicted RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 HOXA10P31260 410 aaPredicted RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 PDE6BP35913 854 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 KRBA2Q6ZNG9 492 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 SMARCE1Q969G3 411 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 SDF4Q9BRK5 362 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 C9orf78Q9NZ63 289 aaPredicted RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 CDHR2Q9BYE9 1310 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 H7C1W4 665 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 SASH1O94885 1247 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 DDX58O95786 925 aaKnown RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 TPM1P09493 284 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 ATL3Q6DD88 541 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 LLPHQ9BRT6 129 aaKnown RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 SH3TC1Q8TE82 1336 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 OAS2P29728 719 aaKnown RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 GCKRQ14397 625 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 DPCR1Q3MIW9 517 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 FMR1NBQ8N0W7 255 aaPredicted RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 BPIFA3Q9BQP9 254 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 TLR7Q9NYK1 1049 aaKnown RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 EFCAB8A8MWE9 144 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 URI1O94763 535 aaPredicted RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 GPS2Q13227 327 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 ZRSR1Q15695 479 aaKnown RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 CCDC158Q5M9N0 1113 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 TRIM65Q6PJ69 517 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 NSUN7Q8NE18 718 aaKnown RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 CARD6Q9BX69 1037 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 PIM2Q9P1W9 311 aa9.88□□□□□ -0.83
HPS4-206ENST00000439453 TRMT112Q9UI30 125 aaKnown RBP9.88□□□□□ -0.83
HPS4-206ENST00000439453 UTYO14607 1347 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 ALDH1L1O75891 902 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 G3BP1Q13283 466 aaKnown RBP eCLIP9.87□□□□□ -0.83
HPS4-206ENST00000439453 LRRFIP1Q32MZ4 808 aaKnown RBP9.87□□□□□ -0.83
HPS4-206ENST00000439453 OLFM4Q6UX06 510 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 LINS1Q8NG48 757 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 MRPS27Q92552 414 aaKnown RBP9.87□□□□□ -0.83
HPS4-206ENST00000439453 MASTLQ96GX5 879 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 KAZALD1Q96I82 304 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 ZCCHC17Q9NP64 241 aaKnown RBP9.87□□□□□ -0.83
HPS4-206ENST00000439453 CWC25Q9NXE8 425 aaPredicted RBP9.87□□□□□ -0.83
HPS4-206ENST00000439453 PFKFB2O60825 505 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 SASH3O75995 380 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 TBC1D8O95759 1140 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 LRRC2Q9BYS8 371 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 KIAA1468Q9P260 1216 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 H0YIN7 160 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 EVCP57679 992 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 PCDHA7Q9UN72 937 aa9.87□□□□□ -0.83
HPS4-206ENST00000439453 PTPDC1A2A3K4 754 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 FANCGO15287 622 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 NPR1P16066 1061 aa9.86□□□□□ -0.83
HPS4-206ENST00000439453 SMC1AQ14683 1233 aaKnown RBP9.86□□□□□ -0.83
HPS4-206ENST00000439453 SF3B3Q15393 1217 aaKnown RBP9.86□□□□□ -0.83
HPS4-206ENST00000439453 CC2D1AQ6P1N0 951 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 144.3 ms