RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 ZNF589Q86UQ0 364 aaPredicted RBP20.41■□□□□ 0.86
COL7A1-202ENST00000422991 TGFBRAP1Q8WUH2 860 aa20.41■□□□□ 0.86
COL7A1-202ENST00000422991 GLIS2Q9BZE0 524 aaPredicted RBP20.41■□□□□ 0.86
COL7A1-202ENST00000422991 DEFB129Q9H1M3 183 aa20.41■□□□□ 0.86
COL7A1-202ENST00000422991 FLT1P17948 1338 aa20.41■□□□□ 0.86
COL7A1-202ENST00000422991 RAD50Q92878 1312 aa20.41■□□□□ 0.86
COL7A1-202ENST00000422991 LAMB1P07942 1786 aa20.41■□□□□ 0.86
COL7A1-202ENST00000422991 SIPA1L1O43166 1804 aa20.4■□□□□ 0.86
COL7A1-202ENST00000422991 PRKAB2O43741 272 aa20.4■□□□□ 0.86
COL7A1-202ENST00000422991 PICALMQ13492 652 aa20.4■□□□□ 0.86
COL7A1-202ENST00000422991 RASA3Q14644 834 aa20.4■□□□□ 0.86
COL7A1-202ENST00000422991 CCDC171Q6TFL3 1326 aa20.4■□□□□ 0.86
COL7A1-202ENST00000422991 CDC37L1Q7L3B6 337 aa20.4■□□□□ 0.86
COL7A1-202ENST00000422991 USP48Q86UV5 1035 aa20.4■□□□□ 0.86
COL7A1-202ENST00000422991 PASKQ96RG2 1323 aa20.4■□□□□ 0.86
COL7A1-202ENST00000422991 IL25Q9H293 177 aa20.4■□□□□ 0.86
COL7A1-202ENST00000422991 PPP2R3BQ9Y5P8 575 aa20.4■□□□□ 0.86
COL7A1-202ENST00000422991 TRPM7Q96QT4 1865 aa20.39■□□□□ 0.86
COL7A1-202ENST00000422991 ATRNL1Q5VV63 1379 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 ITGBL1O95965 494 aaPredicted RBP20.39■□□□□ 0.85
COL7A1-202ENST00000422991 GNAT2P19087 354 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 USP5P45974 858 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 TCP10Q12799 353 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 MAPKAPK5Q8IW41 473 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 SDR42E1Q8WUS8 393 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 FAM151AQ8WW52 585 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 RUFY2Q8WXA3 655 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 KLRG1Q96E93 195 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 TMEM39BQ9GZU3 492 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 OSBPL5Q9H0X9 879 aaPredicted RBP20.39■□□□□ 0.85
COL7A1-202ENST00000422991 MKRN1Q9UHC7 482 aaKnown RBP20.39■□□□□ 0.85
COL7A1-202ENST00000422991 SLC4A4Q9Y6R1 1079 aa20.39■□□□□ 0.85
COL7A1-202ENST00000422991 MFAP1P55081 439 aaKnown RBP20.38■□□□□ 0.85
COL7A1-202ENST00000422991 ZFPM1Q8IX07 1006 aa20.38■□□□□ 0.85
COL7A1-202ENST00000422991 TEPSINQ96N21 525 aa20.38■□□□□ 0.85
COL7A1-202ENST00000422991 CREBZFQ9NS37 354 aa20.38■□□□□ 0.85
COL7A1-202ENST00000422991 ATP8A2Q9NTI2 1148 aa20.38■□□□□ 0.85
COL7A1-202ENST00000422991 SSC5DA1L4H1 1573 aa20.38■□□□□ 0.85
COL7A1-202ENST00000422991 GSG1L2A8MUP6 293 aa20.37■□□□□ 0.85
COL7A1-202ENST00000422991 FOXP2O15409 715 aa20.37■□□□□ 0.85
COL7A1-202ENST00000422991 SGSM2O43147 1006 aa20.37■□□□□ 0.85
COL7A1-202ENST00000422991 DLK2Q6UY11 383 aa20.37■□□□□ 0.85
COL7A1-202ENST00000422991 CDAN1Q8IWY9 1227 aa20.37■□□□□ 0.85
COL7A1-202ENST00000422991 DCP1AQ9NPI6 582 aaPredicted RBP20.37■□□□□ 0.85
COL7A1-202ENST00000422991 TRAF5O00463 557 aa20.36■□□□□ 0.85
COL7A1-202ENST00000422991 VPS53Q5VIR6 699 aa20.36■□□□□ 0.85
COL7A1-202ENST00000422991 CASC1Q6TDU7 716 aa20.36■□□□□ 0.85
COL7A1-202ENST00000422991 SH3BP5LQ7L8J4 393 aa20.36■□□□□ 0.85
COL7A1-202ENST00000422991 CDCA5Q96FF9 252 aa20.36■□□□□ 0.85
COL7A1-202ENST00000422991 ESYT1Q9BSJ8 1104 aa20.36■□□□□ 0.85
COL7A1-202ENST00000422991 EPB41L4AQ9HCS5 686 aaPredicted RBP20.36■□□□□ 0.85
COL7A1-202ENST00000422991 LAMA4Q16363 1823 aa20.36■□□□□ 0.85
COL7A1-202ENST00000422991 PRAMEF18Q5VWM3 479 aa20.35■□□□□ 0.85
COL7A1-202ENST00000422991 GIMAP6Q6P9H5 292 aa20.35■□□□□ 0.85
COL7A1-202ENST00000422991 SAP30BPQ9UHR5 308 aaKnown RBP20.35■□□□□ 0.85
COL7A1-202ENST00000422991 PAPPA2Q9BXP8 1791 aa20.34■□□□□ 0.85
COL7A1-202ENST00000422991 DDTLA6NHG4 134 aaPredicted RBP20.34■□□□□ 0.85
COL7A1-202ENST00000422991 PATL2C9JE40 543 aaKnown RBP20.34■□□□□ 0.85
COL7A1-202ENST00000422991 DDRGK1Q96HY6 314 aa20.34■□□□□ 0.85
COL7A1-202ENST00000422991 HSPD1P10809 573 aaKnown RBP20.33■□□□□ 0.85
COL7A1-202ENST00000422991 FMR1Q06787 632 aaKnown RBP eCLIP20.33■□□□□ 0.85
COL7A1-202ENST00000422991 NBPF12Q5TAG4 269 aaPredicted RBP20.33■□□□□ 0.85
COL7A1-202ENST00000422991 ZSCAN29Q8IWY8 852 aaPredicted RBP20.33■□□□□ 0.85
COL7A1-202ENST00000422991 CSRNP1Q96S65 589 aa20.33■□□□□ 0.85
COL7A1-202ENST00000422991 DHX36Q9H2U1 1008 aaKnown RBP20.33■□□□□ 0.85
COL7A1-202ENST00000422991 PALD1Q9ULE6 856 aa20.33■□□□□ 0.85
COL7A1-202ENST00000422991 ZMYM6O95789 1325 aa20.32■□□□□ 0.84
COL7A1-202ENST00000422991 OTOFQ9HC10 1997 aa20.32■□□□□ 0.84
COL7A1-202ENST00000422991 TMEM88BA6NKF7 163 aa20.32■□□□□ 0.84
COL7A1-202ENST00000422991 APPP05067 770 aa20.32■□□□□ 0.84
COL7A1-202ENST00000422991 IFNL3Q8IZI9 196 aa20.32■□□□□ 0.84
COL7A1-202ENST00000422991 JMYQ8N9B5 988 aa20.32■□□□□ 0.84
COL7A1-202ENST00000422991 NACAP1Q9BZK3 213 aa20.32■□□□□ 0.84
COL7A1-202ENST00000422991 MCM9Q9NXL9 1143 aa20.32■□□□□ 0.84
COL7A1-202ENST00000422991 TDO2P48775 406 aa20.31■□□□□ 0.84
COL7A1-202ENST00000422991 ALX1Q15699 326 aa20.31■□□□□ 0.84
COL7A1-202ENST00000422991 SUPT20HL1Q3ZLR7 823 aa20.31■□□□□ 0.84
COL7A1-202ENST00000422991 DSCC1Q9BVC3 393 aa20.31■□□□□ 0.84
COL7A1-202ENST00000422991 ARPP21Q9UBL0 812 aaPredicted RBP20.31■□□□□ 0.84
COL7A1-202ENST00000422991 PCNTO95613 3336 aa20.31■□□□□ 0.84
COL7A1-202ENST00000422991 USP17L12C9JPN9 530 aa20.3■□□□□ 0.84
COL7A1-202ENST00000422991 USP17L21D6R901 530 aa20.3■□□□□ 0.84
COL7A1-202ENST00000422991 CYP2D6P10635 497 aa20.3■□□□□ 0.84
COL7A1-202ENST00000422991 SLC4A8Q2Y0W8 1093 aa20.3■□□□□ 0.84
COL7A1-202ENST00000422991 SBK1Q52WX2 424 aa20.3■□□□□ 0.84
COL7A1-202ENST00000422991 CTR9Q6PD62 1173 aa20.3■□□□□ 0.84
COL7A1-202ENST00000422991 HOOK2Q96ED9 719 aa20.3■□□□□ 0.84
COL7A1-202ENST00000422991 NAPBQ9H115 298 aa20.3■□□□□ 0.84
COL7A1-202ENST00000422991 MYH8P13535 1937 aa20.29■□□□□ 0.84
COL7A1-202ENST00000422991 CYP2D7A0A087X1C5 515 aa20.29■□□□□ 0.84
COL7A1-202ENST00000422991 POLR3DP05423 398 aaPredicted RBP20.29■□□□□ 0.84
COL7A1-202ENST00000422991 HLA-DOAP06340 250 aa20.29■□□□□ 0.84
COL7A1-202ENST00000422991 NF2P35240 595 aa20.29■□□□□ 0.84
COL7A1-202ENST00000422991 EVX2Q03828 476 aa20.29■□□□□ 0.84
COL7A1-202ENST00000422991 C12orf60Q5U649 245 aa20.29■□□□□ 0.84
COL7A1-202ENST00000422991 TTC6Q86TZ1 520 aa20.29■□□□□ 0.84
COL7A1-202ENST00000422991 EHD4Q9H223 541 aa20.29■□□□□ 0.84
COL7A1-202ENST00000422991 PI4KBQ9UBF8 816 aa20.29■□□□□ 0.84
COL7A1-202ENST00000422991 ROBO3Q96MS0 1386 aa20.29■□□□□ 0.84
COL7A1-202ENST00000422991 CELF2O95319 508 aaKnown RBP20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms