RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 RNPC3Q96LT9 517 aaKnown RBP5.64□□□□□ -1.51
SF3B1-202ENST00000409915 SLKQ9H2G2 1235 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-202ENST00000409915 TFCP2L1Q9NZI6 479 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 CEP126Q9P2H0 1117 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 NAP1L2Q9ULW6 460 aaPredicted RBP5.64□□□□□ -1.51
SF3B1-202ENST00000409915 NOD1Q9Y239 953 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 FCF1Q9Y324 198 aaKnown RBP5.64□□□□□ -1.51
SF3B1-202ENST00000409915 UBR2Q8IWV8 1755 aa5.64□□□□□ -1.51
SF3B1-202ENST00000409915 COL5A3P25940 1745 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 GIGYF1O75420 1035 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 WDHD1O75717 1129 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 FAM13AO94988 1023 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 CRKLP46109 303 aaKnown RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 PIP4K2AP48426 406 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 SERINC3Q13530 473 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 GRIPAP1Q4V328 841 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 PLEKHG4Q58EX7 1191 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 MSL1Q68DK7 614 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 ZNF790Q6PG37 636 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 C11orf96Q7Z7L8 435 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 USP48Q86UV5 1035 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 PHTF2Q8N3S3 785 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 ANKLE1Q8NAG6 615 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 HELQQ8TDG4 1101 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 NAP1L5Q96NT1 182 aaPredicted RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 IPO9Q96P70 1041 aaKnown RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 SETDB2Q96T68 719 aa5.63□□□□□ -1.51
SF3B1-202ENST00000409915 PNNQ9H307 717 aaKnown RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 TYW1Q9NV66 732 aaKnown RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 GEMIN8Q9NWZ8 242 aaKnown RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 TTF2Q9UNY4 1162 aaKnown RBP5.63□□□□□ -1.51
SF3B1-202ENST00000409915 SFI1A8K8P3 1242 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 ZBTB7BO15156 539 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-202ENST00000409915 HTATSF1O43719 755 aaKnown RBP5.62□□□□□ -1.51
SF3B1-202ENST00000409915 GTF2E1P29083 439 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-202ENST00000409915 LMOD3Q0VAK6 560 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 FKBP5Q13451 457 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-202ENST00000409915 MAP7D1Q3KQU3 841 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 CLEC4GQ6UXB4 293 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 COL23A1Q86Y22 540 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-202ENST00000409915 MKL1Q969V6 931 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 FRMD6Q96NE9 622 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 HINFPQ9BQA5 517 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 GNL3LQ9NVN8 582 aaKnown RBP5.62□□□□□ -1.51
SF3B1-202ENST00000409915 TCEAL9Q9UHQ7 104 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 FKBPLQ9UIM3 349 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 TSPYL4Q9UJ04 414 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 ZBTB1Q9Y2K1 713 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 CNTNAP4Q9C0A0 1308 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 HEG1Q9ULI3 1381 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 CICQ96RK0 1608 aaPredicted RBP5.62□□□□□ -1.51
SF3B1-202ENST00000409915 KDM3BQ7LBC6 1761 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 UBR3Q6ZT12 1888 aa5.62□□□□□ -1.51
SF3B1-202ENST00000409915 MYH14Q7Z406 1995 aaKnown RBP5.62□□□□□ -1.51
SF3B1-202ENST00000409915 TNFRSF10AO00220 468 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 LRP5O75197 1615 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 CYP19A1P11511 503 aaPredicted RBP5.61□□□□□ -1.51
SF3B1-202ENST00000409915 NPR3P17342 541 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 ATF4P18848 351 aaPredicted RBP5.61□□□□□ -1.51
SF3B1-202ENST00000409915 MPSTP25325 297 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 GTF2IP78347 998 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 NAA30Q147X3 362 aaPredicted RBP5.61□□□□□ -1.51
SF3B1-202ENST00000409915 TAF7Q15545 349 aaPredicted RBP5.61□□□□□ -1.51
SF3B1-202ENST00000409915 QSER1Q2KHR3 1735 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 KRT24Q2M2I5 525 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 PKDCCQ504Y2 493 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 ZNF831Q5JPB2 1677 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 SPRYD7Q5W111 196 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 CCDC102BQ68D86 513 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 INTS5Q6P9B9 1019 aaKnown RBP5.61□□□□□ -1.51
SF3B1-202ENST00000409915 TPCN2Q8NHX9 752 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 C8orf48Q96LL4 319 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 DMRTB1Q96MA1 342 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 FMNL2Q96PY5 1086 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 SRPK1Q96SB4 655 aaKnown RBP5.61□□□□□ -1.51
SF3B1-202ENST00000409915 IER2Q9BTL4 223 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 CCDC87Q9NVE4 849 aa5.61□□□□□ -1.51
SF3B1-202ENST00000409915 SRP68Q9UHB9 627 aaKnown RBP5.61□□□□□ -1.51
SF3B1-202ENST00000409915 C4AP0C0L4 1744 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 COL15A1P39059 1388 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 SOS1Q07889 1333 aaPredicted RBP5.6□□□□□ -1.51
SF3B1-202ENST00000409915 CDC45O75419 566 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 RPS6KA4O75676 772 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 A1BGP04217 495 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 EIF4A1P60842 406 aaKnown RBP5.6□□□□□ -1.51
SF3B1-202ENST00000409915 ZNF787Q6DD87 383 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 FERMT3Q86UX7 667 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 TSR2Q969E8 191 aaKnown RBP5.6□□□□□ -1.51
SF3B1-202ENST00000409915 CRELD1Q96HD1 420 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 PURBQ96QR8 312 aaKnown RBP5.6□□□□□ -1.51
SF3B1-202ENST00000409915 CITED4Q96RK1 184 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 MTFR1LQ9H019 292 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 SPON1Q9HCB6 807 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 SRA1Q9HD15 236 aaKnown RBP5.6□□□□□ -1.51
SF3B1-202ENST00000409915 BSDC1Q9NW68 430 aaPredicted RBP5.6□□□□□ -1.51
SF3B1-202ENST00000409915 RTCBQ9Y3I0 505 aaKnown RBP5.6□□□□□ -1.51
SF3B1-202ENST00000409915 USP16Q9Y5T5 823 aa5.6□□□□□ -1.51
SF3B1-202ENST00000409915 CCDC189A1A4V9 331 aa5.59□□□□□ -1.51
SF3B1-202ENST00000409915 CHL1O00533 1208 aa5.59□□□□□ -1.51
SF3B1-202ENST00000409915 GPR182O15218 404 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms