RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 BCL2L12Q9HB09 334 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 IMPACTQ9P2X3 320 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 TAF6LQ9Y6J9 622 aa21.13■□□□□ 0.97
USP48-204ENST00000400301 ZNF397Q8NF99 534 aaPredicted RBP21.12■□□□□ 0.97
USP48-204ENST00000400301 CCDC43Q96MW1 224 aaKnown RBP21.12■□□□□ 0.97
USP48-204ENST00000400301 MTIF2P46199 727 aaKnown RBP21.12■□□□□ 0.97
USP48-204ENST00000400301 FKBP15Q5T1M5 1219 aa21.12■□□□□ 0.97
USP48-204ENST00000400301 APOA5Q6Q788 366 aa21.12■□□□□ 0.97
USP48-204ENST00000400301 PIGBQ92521 554 aa21.12■□□□□ 0.97
USP48-204ENST00000400301 TRIM47Q96LD4 638 aa21.12■□□□□ 0.97
USP48-204ENST00000400301 RMND1Q9NWS8 449 aa21.12■□□□□ 0.97
USP48-204ENST00000400301 EIF3JO75822 258 aaKnown RBP21.12■□□□□ 0.97
USP48-204ENST00000400301 ADD2P35612 726 aa21.12■□□□□ 0.97
USP48-204ENST00000400301 GNAQP50148 359 aa21.12■□□□□ 0.97
USP48-204ENST00000400301 TUBB4AP04350 444 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 IDEP14735 1019 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 CALML3P27482 149 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 BMS1Q14692 1282 aaKnown RBP21.11■□□□□ 0.97
USP48-204ENST00000400301 CCDC148Q8NFR7 591 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 BTBD18B2RXH4 712 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 SPAG1Q07617 926 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 TSGA10IPQ3SY00 556 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 LINC00301Q8NCQ3 95 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 KAZALD1Q96I82 304 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 WWC3Q9ULE0 1092 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 CCDC181Q5TID7 509 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 ZNF654Q8IZM8 581 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 IQUBQ8NA54 791 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 CLIC6Q96NY7 704 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 RBM28Q9NW13 759 aaKnown RBP21.11■□□□□ 0.97
USP48-204ENST00000400301 NFE2L3Q9Y4A8 694 aa21.11■□□□□ 0.97
USP48-204ENST00000400301 POLR3GO15318 223 aaPredicted RBP21.1■□□□□ 0.97
USP48-204ENST00000400301 JAKMIP3Q5VZ66 844 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 NYXQ9GZU5 481 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 CTDP1Q9Y5B0 961 aaPredicted RBP21.1■□□□□ 0.97
USP48-204ENST00000400301 FOXO4P98177 505 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 LRRC8AQ8IWT6 810 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 RAB34Q9BZG1 259 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 KARSQ15046 597 aaKnown RBP21.1■□□□□ 0.97
USP48-204ENST00000400301 CCDC96Q2M329 555 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 NOSTRINQ8IVI9 506 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 TMEM266Q2M3C6 531 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 KRT222Q8N1A0 295 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 SYNE4Q8N205 404 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 CACTINQ8WUQ7 758 aaKnown RBP21.1■□□□□ 0.97
USP48-204ENST00000400301 BAG1Q99933 345 aaPredicted RBP21.1■□□□□ 0.97
USP48-204ENST00000400301 LUC7LQ9NQ29 371 aaKnown RBP21.1■□□□□ 0.97
USP48-204ENST00000400301 VPS54Q9P1Q0 977 aa21.1■□□□□ 0.97
USP48-204ENST00000400301 GSTO1P78417 241 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 SPA17Q15506 151 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 BRINP3Q76B58 766 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 SLF2Q8IX21 1173 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 TTLL11Q8NHH1 800 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 SDR42E1Q8WUS8 393 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 CDCA7Q9BWT1 371 aaPredicted RBP21.09■□□□□ 0.97
USP48-204ENST00000400301 ZHX1Q9UKY1 873 aaPredicted RBP21.09■□□□□ 0.97
USP48-204ENST00000400301 CALML4Q96GE6 196 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 GJB4Q9NTQ9 266 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 POLR3EQ9NVU0 708 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 CCDC175P0C221 793 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 PPARAQ07869 468 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 POSTNQ15063 836 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 STOX1Q6ZVD7 989 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 KLHL34Q8N239 644 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 CCDC102AQ96A19 550 aa21.09■□□□□ 0.97
USP48-204ENST00000400301 SLC39A14Q15043 492 aa21.08■□□□□ 0.97
USP48-204ENST00000400301 DPCR1Q3MIW9 517 aa21.08■□□□□ 0.97
USP48-204ENST00000400301 CCDC24Q8N4L8 307 aa21.08■□□□□ 0.97
USP48-204ENST00000400301 MLKLQ8NB16 471 aa21.08■□□□□ 0.97
USP48-204ENST00000400301 HIBADHP31937 336 aaKnown RBP21.08■□□□□ 0.97
USP48-204ENST00000400301 KIF23Q02241 960 aaPredicted RBP21.08■□□□□ 0.97
USP48-204ENST00000400301 ALDH8A1Q9H2A2 487 aaPredicted RBP21.08■□□□□ 0.97
USP48-204ENST00000400301 GYG1P46976 350 aa21.08■□□□□ 0.96
USP48-204ENST00000400301 ATG9AQ7Z3C6 839 aa21.08■□□□□ 0.96
USP48-204ENST00000400301 AIFM3Q96NN9 605 aa21.08■□□□□ 0.96
USP48-204ENST00000400301 TFCP2L1Q9NZI6 479 aa21.08■□□□□ 0.96
USP48-204ENST00000400301 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.08■□□□□ 0.968e-9■■□□□ 11.7
USP48-204ENST00000400301 HLFQ16534 295 aa21.08■□□□□ 0.96
USP48-204ENST00000400301 TRMT44Q8IYL2 757 aaKnown RBP21.08■□□□□ 0.96
USP48-204ENST00000400301 ERO1AQ96HE7 468 aa21.08■□□□□ 0.96
USP48-204ENST00000400301 ANKRD2Q9GZV1 360 aa21.08■□□□□ 0.96
USP48-204ENST00000400301 AATFQ9NY61 560 aaKnown RBP eCLIP21.08■□□□□ 0.96
USP48-204ENST00000400301 RBM6P78332 1123 aaKnown RBP21.07■□□□□ 0.96
USP48-204ENST00000400301 AMPD3Q01432 767 aa21.07■□□□□ 0.96
USP48-204ENST00000400301 CRACR2BQ8N4Y2 399 aaPredicted RBP21.07■□□□□ 0.96
USP48-204ENST00000400301 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.07■□□□□ 0.96
USP48-204ENST00000400301 LZTFL1Q9NQ48 299 aa21.07■□□□□ 0.96
USP48-204ENST00000400301 SERTAD1Q9UHV2 236 aa21.07■□□□□ 0.96
USP48-204ENST00000400301 UTYO14607 1347 aa21.07■□□□□ 0.96
USP48-204ENST00000400301 MED23Q9ULK4 1368 aa21.07■□□□□ 0.96
USP48-204ENST00000400301 MCAMP43121 646 aa21.07■□□□□ 0.96
USP48-204ENST00000400301 AXDND1Q5T1B0 1012 aaPredicted RBP21.07■□□□□ 0.96
USP48-204ENST00000400301 FANCBQ8NB91 859 aa21.07■□□□□ 0.96
USP48-204ENST00000400301 U2AF2P26368 475 aaKnown RBP eCLIP21.07■□□□□ 0.962e-6■■□□□ 13.2
USP48-204ENST00000400301 IL6STP40189 918 aaPredicted RBP21.07■□□□□ 0.96
USP48-204ENST00000400301 PIK3AP1Q6ZUJ8 805 aa21.07■□□□□ 0.96
USP48-204ENST00000400301 SRRTQ9BXP5 876 aaKnown RBP21.07■□□□□ 0.96
USP48-204ENST00000400301 SEC31BQ9NQW1 1179 aa21.07■□□□□ 0.96
USP48-204ENST00000400301 RFX7Q2KHR2 1363 aa21.07■□□□□ 0.96
USP48-204ENST00000400301 C1orf167Q5SNV9 1468 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms