RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 GBP3Q9H0R5 595 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 ZSWIM4Q9H7M6 989 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 UTYO14607 1347 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 RGPD8O14715 1765 aaPredicted RBP6.5□□□□□ -1.37
RFFL-202ENST00000394597 ZNF142P52746 1687 aaPredicted RBP6.5□□□□□ -1.37
RFFL-202ENST00000394597 COL15A1P39059 1388 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 H0YIN7 160 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 ZBTB43O43298 467 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 SERPINC1P01008 464 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 SERPINB2P05120 415 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 PDE6BP35913 854 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 BAG6P46379 1132 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 CCDC178Q5BJE1 867 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 LUZP1Q86V48 1076 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 SYNE4Q8N205 404 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 CCDC82Q8N4S0 544 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 RRP15Q9Y3B9 282 aaKnown RBP6.5□□□□□ -1.37
RFFL-202ENST00000394597 MPHOSPH10O00566 681 aaKnown RBP6.5□□□□□ -1.37
RFFL-202ENST00000394597 GUCY1B3Q02153 619 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 RC3H1Q5TC82 1133 aaKnown RBP6.5□□□□□ -1.37
RFFL-202ENST00000394597 SAMD1Q6SPF0 538 aaPredicted RBP6.5□□□□□ -1.37
RFFL-202ENST00000394597 CHST3Q7LGC8 479 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 MICU3Q86XE3 530 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 CCDC47Q96A33 483 aaKnown RBP6.5□□□□□ -1.37
RFFL-202ENST00000394597 LSG1Q9H089 658 aaKnown RBP6.5□□□□□ -1.37
RFFL-202ENST00000394597 ARMT1Q9H993 441 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 JAG2Q9Y219 1238 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 SLIT3O75094 1523 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 NALCNQ8IZF0 1738 aa6.5□□□□□ -1.37
RFFL-202ENST00000394597 NFAT5O94916 1531 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 PHACTR2O75167 634 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 PHKA1P46020 1223 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 GYG1P46976 350 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 LRMPQ12912 555 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 TMEM132AQ24JP5 1023 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 ERCC6LQ2NKX8 1250 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 RPAINQ86UA6 219 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 MAP4K1Q92918 833 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 SEC62Q99442 399 aaKnown RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 NCAPGQ9BPX3 1015 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 PLA2G12BQ9BX93 195 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 FEZ2Q9UHY8 353 aaPredicted RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 F8W031 263 aaPredicted RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 ZSCAN12O43309 604 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 GADD45BO75293 160 aaPredicted RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 CD2BP2O95400 341 aaKnown RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 HLA-DOAP06340 250 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 ADRA2BP18089 450 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 POLD1P28340 1107 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 APOBRQ0VD83 1088 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 SYCP1Q15431 976 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 SLC27A3Q5K4L6 730 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 CCDC144CPQ8IYA2 1237 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.49□□□□□ -1.37
RFFL-202ENST00000394597 CRACR2AQ9BSW2 395 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 ZSCAN16Q9H4T2 348 aaPredicted RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 RBM28Q9NW13 759 aaKnown RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 MCM9Q9NXL9 1143 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 SETD1AO15047 1707 aaKnown RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 ATP2B4P23634 1241 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 KIF5BP33176 963 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 NAA30Q147X3 362 aaPredicted RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 ZMYM1Q5SVZ6 1142 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 RAB11FIP4Q86YS3 637 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 ZNF34Q8IZ26 560 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 ARHGEF1Q92888 912 aaKnown RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 KAT14Q9H8E8 782 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 PALD1Q9ULE6 856 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 MORC2Q9Y6X9 1032 aaPredicted RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 SLFN14P0C7P3 912 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 HSPD1P10809 573 aaKnown RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 PDE6AP16499 860 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 TYRO3Q06418 890 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 UBE3CQ15386 1083 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 IFIT1BQ5T764 474 aaKnown RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 DPP8Q6V1X1 898 aaPredicted RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 DDX19AQ9NUU7 478 aaKnown RBP6.49□□□□□ -1.37
RFFL-202ENST00000394597 LEMD3Q9Y2U8 911 aa6.49□□□□□ -1.37
RFFL-202ENST00000394597 BBOX1O75936 387 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 CLSTN1O94985 981 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 ITPK1Q13572 414 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 PPP2R5AQ15172 486 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 TSR1Q2NL82 804 aaKnown RBP6.48□□□□□ -1.37
RFFL-202ENST00000394597 TMC6Q7Z403 805 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 GOLGA5Q8TBA6 731 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 SRRTQ9BXP5 876 aaKnown RBP6.48□□□□□ -1.37
RFFL-202ENST00000394597 BSDC1Q9NW68 430 aaPredicted RBP6.48□□□□□ -1.37
RFFL-202ENST00000394597 ZNF804BA4D1E1 1349 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 PES1O00541 588 aaKnown RBP6.48□□□□□ -1.37
RFFL-202ENST00000394597 EBAG9O00559 213 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 TSPY3P0CV98 308 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 TSPY8P0CW00 308 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 SMC1AQ14683 1233 aaKnown RBP6.48□□□□□ -1.37
RFFL-202ENST00000394597 SLC4A8Q2Y0W8 1093 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 RNF187Q5TA31 235 aaPredicted RBP6.48□□□□□ -1.37
RFFL-202ENST00000394597 TBC1D9BQ66K14 1250 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 CAGE1Q8TC20 777 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 TMEM87BQ96K49 555 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 SLC26A6Q9BXS9 759 aa6.48□□□□□ -1.37
RFFL-202ENST00000394597 ZSWIM6Q9HCJ5 1215 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms