RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 KIF28PB7ZC32 967 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 RANBP6O60518 1105 aaKnown RBP10.53□□□□□ -0.72
TDP1-202ENST00000393452 RXRAP19793 462 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 KLRK1P26718 216 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 NFXL1Q6ZNB6 911 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 TMTC2Q8N394 836 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 AIFM3Q96NN9 605 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 ALG1Q9BT22 464 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 PCDHA7Q9UN72 937 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 CCDC88AQ3V6T2 1871 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 CCDC69A6NI79 296 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 CAVIN2O95810 425 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 POLR3DP05423 398 aaPredicted RBP10.53□□□□□ -0.72
TDP1-202ENST00000393452 IFNAR1P17181 557 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 ME1P48163 572 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 SART3Q15020 963 aaKnown RBP10.53□□□□□ -0.72
TDP1-202ENST00000393452 TMED8Q6PL24 325 aaPredicted RBP10.53□□□□□ -0.72
TDP1-202ENST00000393452 CCDC73Q6ZRK6 1079 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 KCNG4Q8TDN1 519 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 SDR42E1Q8WUS8 393 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 BRIP1Q9BX63 1249 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.53□□□□□ -0.72
TDP1-202ENST00000393452 CLIC4Q9Y696 253 aa10.53□□□□□ -0.72
TDP1-202ENST00000393452 AP5Z1O43299 807 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 FGRP09769 529 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 IARSP41252 1262 aaKnown RBP10.52□□□□□ -0.73
TDP1-202ENST00000393452 ANO6Q4KMQ2 910 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 KRT40Q6A162 431 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 PHKBQ93100 1093 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 NSUN4Q96CB9 384 aaKnown RBP10.52□□□□□ -0.73
TDP1-202ENST00000393452 MYL10Q9BUA6 226 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 MAST2Q6P0Q8 1798 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 UBR3Q6ZT12 1888 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 DUOX1Q9NRD9 1551 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 U2AF2P26368 475 aaKnown RBP eCLIP10.52□□□□□ -0.73
TDP1-202ENST00000393452 HIBADHP31937 336 aaKnown RBP10.52□□□□□ -0.73
TDP1-202ENST00000393452 WTAPQ15007 396 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 TRAPPC3LQ5T215 181 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 SASS6Q6UVJ0 657 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 FMR1NBQ8N0W7 255 aaPredicted RBP10.52□□□□□ -0.73
TDP1-202ENST00000393452 CBX8Q9HC52 389 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 KIAA1551Q9HCM1 1747 aa10.52□□□□□ -0.73
TDP1-202ENST00000393452 SPTLC2O15270 562 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 FMNL1O95466 1100 aaPredicted RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 PCP11498 1178 aaKnown RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 RFC4P35249 363 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 SEC23AQ15436 765 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 RRP12Q5JTH9 1297 aaKnown RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 ANO1Q5XXA6 986 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 SYNE3Q6ZMZ3 975 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 CCDC144CPQ8IYA2 1237 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 FSIP1Q8NA03 581 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 MRPS27Q92552 414 aaKnown RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 ERICH2A1L162 156 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 KINO60870 393 aaKnown RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 IGSF3O75054 1194 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 PTMAP06454 111 aaKnown RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 ADRA2BP18089 450 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 DYNLL1P63167 89 aaKnown RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 MECOMQ03112 1051 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 SSRP1Q08945 709 aaKnown RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 NFIXQ14938 502 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 SLC39A14Q15043 492 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 STK38Q15208 465 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 AXDND1Q5T1B0 1012 aaPredicted RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 LUZP1Q86V48 1076 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 CCDC24Q8N4L8 307 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 TDRD7Q8NHU6 1098 aaKnown RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 ESR2Q92731 530 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 BCL11BQ9C0K0 894 aaPredicted RBP10.51□□□□□ -0.73
TDP1-202ENST00000393452 LRRC4BQ9NT99 713 aa10.51□□□□□ -0.73
TDP1-202ENST00000393452 DLEC1Q9Y238 1755 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 MYH6P13533 1939 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 AFF2P51816 1311 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 ZNF165P49910 485 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 PPP2R5BQ15173 497 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 RTN1Q16799 776 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 FAM196AQ6ZSG2 479 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 NBPF11Q86T75 865 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 WASF1Q92558 559 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 ZKSCAN3Q9BRR0 538 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 TOMM22Q9NS69 142 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 LAMB1P07942 1786 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 CCDC196A0A1B0GTZ2 297 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 MINDY4BA8MYZ0 360 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 SMIM22K7EJ46 135 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 OFD1O75665 1012 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 CTR9Q6PD62 1173 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 TXNRD3Q86VQ6 643 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 ZNF654Q8IZM8 581 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 FANCBQ8NB91 859 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 UBAC1Q9BSL1 405 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 TFCP2L1Q9NZI6 479 aa10.5□□□□□ -0.73
TDP1-202ENST00000393452 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.5□□□□□ -0.73
TDP1-202ENST00000393452 UBE2Q2LH0YL09 131 aa10.49□□□□□ -0.73
TDP1-202ENST00000393452 PRDX5P30044 214 aa10.49□□□□□ -0.73
TDP1-202ENST00000393452 GRAPQ13588 217 aa10.49□□□□□ -0.73
TDP1-202ENST00000393452 PTPAQ15257 358 aa10.49□□□□□ -0.73
TDP1-202ENST00000393452 SF3A1Q15459 793 aaKnown RBP10.49□□□□□ -0.73
TDP1-202ENST00000393452 SEPT12Q8IYM1 358 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms