RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CCDC112Q8NEF3 446 aa10.46□□□□□ -0.73
LIMCH1-202ENST00000381753 GRAPLQ8TC17 118 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-202ENST00000381753 ZSCAN31Q96LW9 406 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-202ENST00000381753 GLT8D2Q9H1C3 349 aa10.46□□□□□ -0.73
LIMCH1-202ENST00000381753 PBRM1Q86U86 1689 aa10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 CYP2B6P20813 491 aa10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 HMGN5P82970 282 aaKnown RBP10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 NSMCE1Q8WV22 266 aa10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 ARHGEF1Q92888 912 aaKnown RBP10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 SERPINC1P01008 464 aa10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 CCT2P78371 535 aaKnown RBP10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 TFCP2Q12800 502 aa10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 OTUD6AQ7L8S5 288 aa10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 METTL23Q86XA0 190 aa10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 BSDC1Q9NW68 430 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 CHD1O14646 1710 aa10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 BLMP54132 1417 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-202ENST00000381753 SH3BP5O60239 455 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 NRBP2Q9NSY0 501 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 SLC8A2Q9UPR5 921 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 ZBTB43O43298 467 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 KRT79Q5XKE5 535 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 GPR101Q96P66 508 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 MAP3K15Q6ZN16 1313 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 A2ML1A8K2U0 1454 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 PRPF6O94906 941 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 TNNT1P13805 278 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 ATF7P17544 494 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 GCKRQ14397 625 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 GIGYF2Q6Y7W6 1299 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 CARMIL3Q8ND23 1372 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 ZNF594Q96JF6 807 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 GYG1P46976 350 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 ALDH1L2Q3SY69 923 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 NUDT18Q6ZVK8 323 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 TSNARE1Q96NA8 513 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 COA1Q9GZY4 146 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 POLKQ9UBT6 870 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 NFX1Q12986 1120 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 URGCPQ8TCY9 931 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 ARMT1Q9H993 441 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 GGA3Q9NZ52 723 aa10.45□□□□□ -0.74
LIMCH1-202ENST00000381753 EZRP15311 586 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 GUCY1B3Q02153 619 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 TMEM57Q8N5G2 664 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 KDM5DQ9BY66 1539 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 ARHGEF35A5YM69 484 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 UPP2O95045 317 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 TGFB2P61812 414 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 PRAMEF22A3QJZ6 481 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 EYA2O00167 538 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 MAEAQ7L5Y9 396 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 ZNF592Q92610 1267 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 MMP19Q99542 508 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 NBPF26B4DH59 902 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 HS2ST1Q7LGA3 356 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 DEPTORQ8TB45 409 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 MAP10Q9P2G4 905 aa10.44□□□□□ -0.74
LIMCH1-202ENST00000381753 SHANK2Q9UPX8 1470 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 GDF11O95390 407 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 APLP1P51693 650 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 SPICE1Q8N0Z3 855 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 NARFQ9UHQ1 456 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 USP6P35125 1406 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 ZBED9Q6R2W3 1325 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 DDX11L8A8MPP1 907 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 GCOM1H8Y6P7 765 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 POLR2MP0CAP2 368 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 RARBP10826 455 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 SNX16P57768 344 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 CHRNDQ07001 517 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 RNF180Q86T96 592 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 TBC1D5Q92609 795 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 TAF4BQ92750 862 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 SECISBP2LQ93073 1101 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 HOXC10Q9NYD6 342 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 ATXN3P54252 364 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 ATN1P54259 1190 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 SPATA5Q8NB90 893 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 BRIP1Q9BX63 1249 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 EXOC1Q9NV70 894 aa10.43□□□□□ -0.74
LIMCH1-202ENST00000381753 PPFIA3O75145 1194 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 FCER1AP12319 257 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 PIGBQ92521 554 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 BICC1Q9H694 974 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 EXOC7Q9UPT5 735 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 PA2G4Q9UQ80 394 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 ARHGEF37A1IGU5 675 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 TMEM232C9JQI7 657 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 RNF113AO15541 343 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 DAPK3O43293 454 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 ANGEL2Q5VTE6 544 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 CC2D1AQ6P1N0 951 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 NLRP7Q8WX94 980 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 TFDP1Q14186 410 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 WDR44Q5JSH3 913 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 MAP1SQ66K74 1059 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 ADARB2Q9NS39 739 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 CFAP45Q9UL16 551 aa10.42□□□□□ -0.74
LIMCH1-202ENST00000381753 FIBPO43427 364 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms