RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 SEC31BQ9NQW1 1179 aa21.21■□□□□ 0.99
CCDC3-201ENST00000378825 KCNH3Q9ULD8 1083 aa21.21■□□□□ 0.99
CCDC3-201ENST00000378825 ARHGAP6O43182 974 aa21.2■□□□□ 0.99
CCDC3-201ENST00000378825 RANBP6O60518 1105 aaKnown RBP21.2■□□□□ 0.99
CCDC3-201ENST00000378825 KRBA2Q6ZNG9 492 aa21.2■□□□□ 0.99
CCDC3-201ENST00000378825 MRFAP1Q9Y605 127 aa21.2■□□□□ 0.99
CCDC3-201ENST00000378825 CBFA2T2O43439 604 aa21.2■□□□□ 0.98
CCDC3-201ENST00000378825 METAP2P50579 478 aaKnown RBP eCLIP21.2■□□□□ 0.98
CCDC3-201ENST00000378825 RAD51AP2Q09MP3 1159 aa21.2■□□□□ 0.98
CCDC3-201ENST00000378825 OLFM4Q6UX06 510 aa21.2■□□□□ 0.98
CCDC3-201ENST00000378825 ZFP91Q96JP5 570 aaPredicted RBP21.2■□□□□ 0.98
CCDC3-201ENST00000378825 GPR108Q9NPR9 543 aa21.2■□□□□ 0.98
CCDC3-201ENST00000378825 B4E1Z4 1266 aa21.2■□□□□ 0.98
CCDC3-201ENST00000378825 TBX2Q13207 712 aaPredicted RBP21.2■□□□□ 0.98
CCDC3-201ENST00000378825 SAMSN1Q9NSI8 373 aaKnown RBP21.2■□□□□ 0.98
CCDC3-201ENST00000378825 CEP126Q9P2H0 1117 aa21.2■□□□□ 0.98
CCDC3-201ENST00000378825 NFE2L3Q9Y4A8 694 aa21.2■□□□□ 0.98
CCDC3-201ENST00000378825 H3BQF6 201 aa21.19■□□□□ 0.98
CCDC3-201ENST00000378825 CCP110O43303 1012 aa21.19■□□□□ 0.98
CCDC3-201ENST00000378825 ZSCAN12O43309 604 aa21.19■□□□□ 0.98
CCDC3-201ENST00000378825 CDK11BP21127 795 aaKnown RBP21.19■□□□□ 0.98
CCDC3-201ENST00000378825 WDR17Q8IZU2 1322 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 C4AP0C0L4 1744 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 C4BP0C0L5 1744 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 CCDC102BQ68D86 513 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 RSRC2Q7L4I2 434 aaKnown RBP21.18■□□□□ 0.98
CCDC3-201ENST00000378825 SRRTQ9BXP5 876 aaKnown RBP21.18■□□□□ 0.98
CCDC3-201ENST00000378825 FUT8Q9BYC5 575 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 LZTFL1Q9NQ48 299 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 MAN1B1Q9UKM7 699 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 PCDH11XQ9BZA7 1347 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 PCDH11YQ9BZA8 1340 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 SOWAHDA6NJG2 315 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 TUBB4AP04350 444 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 GUCY1A2P33402 732 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 CCDC82Q8N4S0 544 aa21.18■□□□□ 0.98
CCDC3-201ENST00000378825 ZMYM6O95789 1325 aa21.17■□□□□ 0.98
CCDC3-201ENST00000378825 PPP6R2O75170 966 aa21.17■□□□□ 0.98
CCDC3-201ENST00000378825 APOA5Q6Q788 366 aa21.17■□□□□ 0.98
CCDC3-201ENST00000378825 USP49Q70CQ1 688 aa21.17■□□□□ 0.98
CCDC3-201ENST00000378825 SYNE4Q8N205 404 aa21.17■□□□□ 0.98
CCDC3-201ENST00000378825 APPBP2Q92624 585 aa21.17■□□□□ 0.98
CCDC3-201ENST00000378825 MPHOSPH8Q99549 860 aa21.17■□□□□ 0.98
CCDC3-201ENST00000378825 TEX13AQ9BXU3 409 aaPredicted RBP21.17■□□□□ 0.98
CCDC3-201ENST00000378825 ANGEL1Q9UNK9 670 aaKnown RBP21.17■□□□□ 0.98
CCDC3-201ENST00000378825 MDM2Q00987 491 aaPredicted RBP21.17■□□□□ 0.98
CCDC3-201ENST00000378825 CCDC12Q8WUD4 166 aaPredicted RBP21.17■□□□□ 0.98
CCDC3-201ENST00000378825 SUGCTQ9HAC7 445 aa21.17■□□□□ 0.98
CCDC3-201ENST00000378825 PUF60Q9UHX1 559 aaKnown RBP21.17■□□□□ 0.98
CCDC3-201ENST00000378825 CPDO75976 1380 aa21.16■□□□□ 0.98
CCDC3-201ENST00000378825 TEX33O43247 280 aa21.16■□□□□ 0.98
CCDC3-201ENST00000378825 APPP05067 770 aa21.16■□□□□ 0.98
CCDC3-201ENST00000378825 ATP2B1P20020 1258 aa21.16■□□□□ 0.98
CCDC3-201ENST00000378825 CMTR1Q8N1G2 835 aaKnown RBP21.16■□□□□ 0.98
CCDC3-201ENST00000378825 CPLX3Q8WVH0 158 aa21.16■□□□□ 0.98
CCDC3-201ENST00000378825 FAM217BQ9NTX9 383 aaPredicted RBP21.16■□□□□ 0.98
CCDC3-201ENST00000378825 LCMT1Q9UIC8 334 aa21.16■□□□□ 0.98
CCDC3-201ENST00000378825 KCNJ14Q9UNX9 436 aa21.16■□□□□ 0.98
CCDC3-201ENST00000378825 DCCP43146 1447 aa21.16■□□□□ 0.98
CCDC3-201ENST00000378825 GPR161Q8N6U8 529 aaKnown RBP21.16■□□□□ 0.98
CCDC3-201ENST00000378825 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.16■□□□□ 0.98
CCDC3-201ENST00000378825 SERTAD1Q9UHV2 236 aa21.16■□□□□ 0.98
CCDC3-201ENST00000378825 UBN2Q6ZU65 1347 aa21.16■□□□□ 0.98
CCDC3-201ENST00000378825 BTBD18B2RXH4 712 aa21.15■□□□□ 0.98
CCDC3-201ENST00000378825 POLR2DO15514 142 aaKnown RBP21.15■□□□□ 0.98
CCDC3-201ENST00000378825 CASP1P29466 404 aa21.15■□□□□ 0.98
CCDC3-201ENST00000378825 ARFGAP3Q9NP61 516 aa21.15■□□□□ 0.98
CCDC3-201ENST00000378825 TOB1P50616 345 aaPredicted RBP21.15■□□□□ 0.98
CCDC3-201ENST00000378825 NTRK3Q16288 839 aa21.15■□□□□ 0.98
CCDC3-201ENST00000378825 SPECC1LQ69YQ0 1117 aa21.15■□□□□ 0.98
CCDC3-201ENST00000378825 WWC2Q6AWC2 1192 aa21.15■□□□□ 0.98
CCDC3-201ENST00000378825 SH2B2O14492 632 aaPredicted RBP21.14■□□□□ 0.98
CCDC3-201ENST00000378825 COBLO75128 1261 aa21.14■□□□□ 0.98
CCDC3-201ENST00000378825 ABL1P00519 1130 aa21.14■□□□□ 0.98
CCDC3-201ENST00000378825 CHMP4CQ96CF2 233 aa21.14■□□□□ 0.98
CCDC3-201ENST00000378825 SLC26A6Q9BXS9 759 aa21.14■□□□□ 0.98
CCDC3-201ENST00000378825 GLI3P10071 1580 aa21.14■□□□□ 0.98
CCDC3-201ENST00000378825 IL2RBP14784 551 aa21.14■□□□□ 0.97
CCDC3-201ENST00000378825 ZNF18P17022 549 aa21.14■□□□□ 0.97
CCDC3-201ENST00000378825 MCAMP43121 646 aa21.14■□□□□ 0.97
CCDC3-201ENST00000378825 LONRF2Q1L5Z9 754 aa21.14■□□□□ 0.97
CCDC3-201ENST00000378825 FCHSD1Q86WN1 690 aa21.14■□□□□ 0.97
CCDC3-201ENST00000378825 CREBRFQ8IUR6 639 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 JMYQ8N9B5 988 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 FAM89AQ96GI7 184 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 FEZ2Q9UHY8 353 aaPredicted RBP21.13■□□□□ 0.97
CCDC3-201ENST00000378825 PKD1L3Q7Z443 1732 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 FAM237AA0A1B0GTK4 181 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 STX10O60499 249 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 EVA1CP58658 441 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 FAM193AP78312 1265 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 DHX8Q14562 1220 aaKnown RBP21.13■□□□□ 0.97
CCDC3-201ENST00000378825 POSTNQ15063 836 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 SLC9C2Q5TAH2 1124 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 RAD9BQ6WBX8 426 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 IARSP41252 1262 aaKnown RBP21.13■□□□□ 0.97
CCDC3-201ENST00000378825 STX17P56962 302 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 TRDNQ13061 729 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 CCDC57Q2TAC2 916 aa21.13■□□□□ 0.97
CCDC3-201ENST00000378825 NFXL1Q6ZNB6 911 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms