RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 CCDC70Q6NSX1 233 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 C17orf53Q8N3J3 647 aaPredicted RBP16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 RGS12O14924 1447 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 XDHP47989 1333 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 ZNF654Q8IZM8 581 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 DHX58Q96C10 678 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 OVOS2A0A0G2JMS6 1433 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 CPDO75976 1380 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 CCP110O43303 1012 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 TOP1P11387 765 aaKnown RBP16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 TNNI2P48788 182 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 TMEM132AQ24JP5 1023 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 HSP90AA4PQ58FG1 418 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 ANO1Q5XXA6 986 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 CERS3Q8IU89 383 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 ZBTB9Q96C00 473 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 PIH1D3Q9NQM4 214 aaKnown RBP16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 LEMD3Q9Y2U8 911 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 NCOA3Q9Y6Q9 1424 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 PFKFB2O60825 505 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 MCM7P33993 719 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 TNIP1Q15025 636 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 C2CD5Q86YS7 1000 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 COL15A1P39059 1388 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 PRKAB2O43741 272 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 GNA11P29992 359 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 NKX1-1Q15270 411 aaPredicted RBP16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 RILPL1Q5EBL4 403 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 CMTR1Q8N1G2 835 aaKnown RBP16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 GPCPD1Q9NPB8 672 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 ATP10DQ9P241 1426 aa16.21■□□□□ 0.19
SHROOM1-203ENST00000378679 ARHGEF1Q92888 912 aaKnown RBP16.21■□□□□ 0.18
SHROOM1-203ENST00000378679 PYM1Q9BRP8 204 aaKnown RBP16.21■□□□□ 0.18
SHROOM1-203ENST00000378679 UBA5Q9GZZ9 404 aa16.21■□□□□ 0.18
SHROOM1-203ENST00000378679 DEF6Q9H4E7 631 aa16.21■□□□□ 0.18
SHROOM1-203ENST00000378679 KCNJ14Q9UNX9 436 aa16.21■□□□□ 0.18
SHROOM1-203ENST00000378679 CDHR2Q9BYE9 1310 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 DCCP43146 1447 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 PDIA3P30101 505 aaKnown RBP16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 KIAA0825Q8IV33 1275 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 KRI1Q8N9T8 703 aaKnown RBP16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 SIGLEC1Q9BZZ2 1709 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 PPIP5K2O43314 1243 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 BBOX1O75936 387 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 CUL4AQ13619 759 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 C16orf45Q96MC5 204 aaPredicted RBP16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 BSDC1Q9NW68 430 aaPredicted RBP16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 ARPP21Q9UBL0 812 aaPredicted RBP16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 TNKSO95271 1327 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 ITSN1Q15811 1721 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 AMPD3Q01432 767 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 ZNF174Q15697 407 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 TBC1D9BQ66K14 1250 aa16.2■□□□□ 0.18
SHROOM1-203ENST00000378679 DYNLL1P63167 89 aaKnown RBP16.19■□□□□ 0.18
SHROOM1-203ENST00000378679 CPLX3Q8WVH0 158 aa16.19■□□□□ 0.18
SHROOM1-203ENST00000378679 CELF1Q92879 486 aaKnown RBP16.19■□□□□ 0.18
SHROOM1-203ENST00000378679 USP40Q9NVE5 1235 aa16.19■□□□□ 0.18
SHROOM1-203ENST00000378679 STAT6P42226 847 aa16.19■□□□□ 0.18
SHROOM1-203ENST00000378679 SCNN1DP51172 638 aa16.19■□□□□ 0.18
SHROOM1-203ENST00000378679 VPS72Q15906 364 aa16.19■□□□□ 0.18
SHROOM1-203ENST00000378679 FAM160A1Q05DH4 1040 aa16.19■□□□□ 0.18
SHROOM1-203ENST00000378679 SCRN1Q12765 414 aa16.19■□□□□ 0.18
SHROOM1-203ENST00000378679 PPP2R5BQ15173 497 aa16.19■□□□□ 0.18
SHROOM1-203ENST00000378679 MYO5BQ9ULV0 1848 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 AOPEPQ8N6M6 819 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 CERKQ8TCT0 537 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 TEKT1Q969V4 418 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 SEMA3EO15041 775 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 NOM1Q5C9Z4 860 aaKnown RBP16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 ATG9AQ7Z3C6 839 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 TMC6Q7Z403 805 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 LCORLQ8N3X6 602 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 RBSNQ9H1K0 784 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 FANCBQ8NB91 859 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 GJA3Q9Y6H8 435 aa16.18■□□□□ 0.18
SHROOM1-203ENST00000378679 VWA3AA6NCI4 1184 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 CYP2E1P05181 493 aaPredicted RBP16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 LMOD1P29536 600 aaPredicted RBP16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 VPS54Q9P1Q0 977 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 TMEM63CQ9P1W3 806 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 MEGF6O75095 1541 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 LARGE1O95461 756 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 HSPA1LP34931 641 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 TRAF1Q13077 416 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 CT47A1Q5JQC4 288 aaPredicted RBP16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 CCDC112Q8NEF3 446 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 EHMT1Q9H9B1 1298 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 MINPP1Q9UNW1 487 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 BTDP43251 543 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 LETM2Q2VYF4 491 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 PIK3AP1Q6ZUJ8 805 aa16.17■□□□□ 0.18
SHROOM1-203ENST00000378679 MMP10P09238 476 aa16.16■□□□□ 0.18
SHROOM1-203ENST00000378679 DTHD1Q6ZMT9 781 aa16.16■□□□□ 0.18
SHROOM1-203ENST00000378679 SCARF1Q14162 830 aa16.16■□□□□ 0.18
SHROOM1-203ENST00000378679 SMARCC2Q8TAQ2 1214 aa16.16■□□□□ 0.18
SHROOM1-203ENST00000378679 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.16■□□□□ 0.18
SHROOM1-203ENST00000378679 CNKSR1Q969H4 720 aa16.16■□□□□ 0.18
SHROOM1-203ENST00000378679 ZSCAN10Q96SZ4 725 aaPredicted RBP16.16■□□□□ 0.18
SHROOM1-203ENST00000378679 ATP8A2Q9NTI2 1148 aa16.16■□□□□ 0.18
SHROOM1-203ENST00000378679 GRAPQ13588 217 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms