RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CHST3Q7LGC8 479 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 CTU1Q7Z7A3 348 aaKnown RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 CEP112Q8N8E3 955 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 SHCBP1Q8NEM2 672 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 POP1Q99575 1024 aaKnown RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 POLR3EQ9NVU0 708 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 TTF2Q9UNY4 1162 aaKnown RBP4.64□□□□□ -1.67
USH2A-202ENST00000366942 ITM2BQ9Y287 266 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 LEMD3Q9Y2U8 911 aa4.64□□□□□ -1.67
USH2A-202ENST00000366942 ZNF233A6NK53 670 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 DAPK3O43293 454 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 GNA11P29992 359 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 EPHX2P34913 555 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 ARL1P40616 181 aaPredicted RBP4.63□□□□□ -1.67
USH2A-202ENST00000366942 ST8SIA6P61647 398 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 MKRN3Q13064 507 aaKnown RBP4.63□□□□□ -1.67
USH2A-202ENST00000366942 GPS2Q13227 327 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 TRPC3Q13507 836 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 TTLL5Q6EMB2 1281 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 CPXCR1Q8N123 301 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 MKNK1Q9BUB5 465 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 GPCPD1Q9NPB8 672 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 CCPG1Q9ULG6 757 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 GNRH1P01148 92 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 PDE6AP16499 860 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 ABCD1P33897 745 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 FOSBP53539 338 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 DCTN1Q14203 1278 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 KIZQ2M2Z5 673 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 CEP135Q66GS9 1140 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 SAMD7Q7Z3H4 446 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 ANKRD13AQ8IZ07 590 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 C7orf31Q8N865 590 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 IL17RAQ96F46 866 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 ADARB2Q9NS39 739 aaKnown RBP4.63□□□□□ -1.67
USH2A-202ENST00000366942 CFTRP13569 1480 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 CUX1P39880 1505 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 FLOT1O75955 427 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 BMP15O95972 392 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 FKBP1BP68106 108 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 RABEP1Q15276 862 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 SGO2Q562F6 1265 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 CCDC91Q7Z6B0 441 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 CMTR1Q8N1G2 835 aaKnown RBP4.63□□□□□ -1.67
USH2A-202ENST00000366942 CENPSQ8N2Z9 138 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 RRP36Q96EU6 259 aaKnown RBP4.63□□□□□ -1.67
USH2A-202ENST00000366942 SHDQ96IW2 340 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 PRRX2Q99811 253 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 ATP11BQ9Y2G3 1177 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 NESP48681 1621 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 USP17L3A6NCW0 530 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 USP17L4A6NCW7 530 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 CYP4A11Q02928 519 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 SND1Q7KZF4 910 aaKnown RBP eCLIP4.63□□□□□ -1.67
USH2A-202ENST00000366942 USP17L1Q7RTZ2 530 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 EFCAB3Q8N7B9 438 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 RRAGCQ9HB90 399 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 RABGAP1Q9Y3P9 1069 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 PIK3R4Q99570 1358 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 NKTRP30414 1462 aaKnown RBP4.63□□□□□ -1.67
USH2A-202ENST00000366942 LOC102724428A0A0B4J2F2 783 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 KDM6BO15054 1643 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 FARP2O94887 1054 aaPredicted RBP4.63□□□□□ -1.67
USH2A-202ENST00000366942 CYBBP04839 570 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 MYL3P08590 195 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 CIITAP33076 1130 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 SIK1P57059 783 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 TWISTNBQ3B726 338 aaPredicted RBP4.63□□□□□ -1.67
USH2A-202ENST00000366942 TADA2BQ86TJ2 420 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 ZSCAN1Q8NBB4 408 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 IWS1Q96ST2 819 aa4.63□□□□□ -1.67
USH2A-202ENST00000366942 THG1LQ9NWX6 298 aaKnown RBP4.63□□□□□ -1.67
USH2A-202ENST00000366942 OPLAHO14841 1288 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 PRPF40AO75400 957 aaKnown RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 GABPAQ06546 454 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 WAPLQ7Z5K2 1190 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 GIMAP8Q8ND71 665 aaPredicted RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 ZNF830Q96NB3 372 aaPredicted RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 CLIP2Q9UDT6 1046 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 SMC3Q9UQE7 1217 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 RWDD3Q9Y3V2 267 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 PAXBP1Q9Y5B6 917 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 PCDHB12Q9Y5F1 795 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 A2MP01023 1474 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 MAGI2Q86UL8 1455 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 CCL15-CCL14A0A0B4J2E2 113 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 STX10O60499 249 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 KPNA6O60684 536 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 TRPA1O75762 1119 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 ABL1P00519 1130 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 CCL15Q16663 113 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 PGBD4Q96DM1 585 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 KIF1BPQ96EK5 621 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 DDX50Q9BQ39 737 aaKnown RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 ODF2LQ9ULJ1 636 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 PPP1R12AO14974 1030 aaPredicted RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 ASNSP08243 561 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 IL15P40933 162 aaPredicted RBP4.62□□□□□ -1.67
USH2A-202ENST00000366942 SLC1A4P43007 532 aa4.62□□□□□ -1.67
USH2A-202ENST00000366942 ZNF713Q8N859 430 aaPredicted RBP4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms