RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 TFAP4Q01664 338 aa12.92□□□□□ -0.34
SVIP-201ENST00000354193 KLHL40Q2TBA0 621 aa12.92□□□□□ -0.34
SVIP-201ENST00000354193 VEZTQ9HBM0 779 aa12.92□□□□□ -0.34
SVIP-201ENST00000354193 EVX2Q03828 476 aa12.92□□□□□ -0.34
SVIP-201ENST00000354193 TNKSO95271 1327 aa12.92□□□□□ -0.34
SVIP-201ENST00000354193 RAD17O75943 681 aa12.92□□□□□ -0.34
SVIP-201ENST00000354193 ISM2Q6H9L7 571 aa12.92□□□□□ -0.34
SVIP-201ENST00000354193 SH3RF3Q8TEJ3 882 aaPredicted RBP12.92□□□□□ -0.34
SVIP-201ENST00000354193 SCAF8Q9UPN6 1271 aaKnown RBP12.92□□□□□ -0.34
SVIP-201ENST00000354193 GRIK5Q16478 980 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 ZSCAN23Q3MJ62 389 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 SLC10A5Q5PT55 438 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 LARGE2Q8N3Y3 721 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 ERCC4Q92889 916 aaPredicted RBP12.91□□□□□ -0.34
SVIP-201ENST00000354193 KAT14Q9H8E8 782 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 GSTO1P78417 241 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 TBC1D16Q8TBP0 767 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 POLLQ9UGP5 575 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 FAM196BA6NMK8 535 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 FLAD1Q8NFF5 587 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 ANO8Q9HCE9 1232 aaPredicted RBP12.91□□□□□ -0.34
SVIP-201ENST00000354193 PKD1L3Q7Z443 1732 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 NSUN4Q96CB9 384 aaKnown RBP12.91□□□□□ -0.34
SVIP-201ENST00000354193 ZNF396Q96N95 335 aaPredicted RBP12.91□□□□□ -0.34
SVIP-201ENST00000354193 BCS1LQ9Y276 419 aa12.91□□□□□ -0.34
SVIP-201ENST00000354193 DOT1LQ8TEK3 1739 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 UBE2Q2LH0YL09 131 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 PDILTQ8N807 584 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 NSUN7Q8NE18 718 aaKnown RBP12.9□□□□□ -0.34
SVIP-201ENST00000354193 TNMDQ9H2S6 317 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 CFAP45Q9UL16 551 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 V9GY48 417 aaPredicted RBP12.9□□□□□ -0.34
SVIP-201ENST00000354193 POLRMTO00411 1230 aaKnown RBP12.9□□□□□ -0.34
SVIP-201ENST00000354193 GOLGA8HP0CJ92 632 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 APOA5Q6Q788 366 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 TMEM63CQ9P1W3 806 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 KINO60870 393 aaKnown RBP12.9□□□□□ -0.34
SVIP-201ENST00000354193 XBP1P17861 261 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 GPT2Q8TD30 523 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 BRIP1Q9BX63 1249 aa12.9□□□□□ -0.34
SVIP-201ENST00000354193 MARCH6O60337 910 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 PFKFB2O60825 505 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 FBXO33Q7Z6M2 555 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 USP40Q9NVE5 1235 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 DACT1Q9NYF0 836 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 SCAND2PQ9GZW5 306 aaPredicted RBP12.89□□□□□ -0.35
SVIP-201ENST00000354193 CPVLQ9H3G5 476 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 NPR1P16066 1061 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 MRE11P49959 708 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 SLC15A2Q16348 729 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 AOC3Q16853 763 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 CCDC96Q2M329 555 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 ZNF654Q8IZM8 581 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 EYA3Q99504 573 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 GAS2L3Q86XJ1 694 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 SLF2Q8IX21 1173 aa12.89□□□□□ -0.35
SVIP-201ENST00000354193 MYH14Q7Z406 1995 aaKnown RBP12.88□□□□□ -0.35
SVIP-201ENST00000354193 CCDC196A0A1B0GTZ2 297 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 USP17L3A6NCW0 530 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 USP17L4A6NCW7 530 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 BIN1O00499 593 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 ANTXR2P58335 489 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 SASS6Q6UVJ0 657 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 USP17L1Q7RTZ2 530 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 VIRMAQ69YN4 1812 aaKnown RBP12.88□□□□□ -0.35
SVIP-201ENST00000354193 SPECC1Q5M775 1068 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 TTC6Q86TZ1 520 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 FSIP1Q8NA03 581 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 MASTLQ96GX5 879 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 TMEM87BQ96K49 555 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 NUP62CLQ9H1M0 184 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 DCP1AQ9NPI6 582 aaPredicted RBP12.88□□□□□ -0.35
SVIP-201ENST00000354193 KCNQ5Q9NR82 932 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 CLRN2A0PK11 232 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 XRCC6P12956 609 aaKnown RBP eCLIP12.88□□□□□ -0.35
SVIP-201ENST00000354193 MB21D2Q8IYB1 491 aaPredicted RBP12.88□□□□□ -0.35
SVIP-201ENST00000354193 UIMC1Q96RL1 719 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 VPS54Q9P1Q0 977 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 GJA3Q9Y6H8 435 aa12.88□□□□□ -0.35
SVIP-201ENST00000354193 ARFGEF2Q9Y6D5 1785 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 NLRP5P59047 1200 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 ST3GAL1Q11201 340 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 R3HDM1Q15032 1099 aaKnown RBP12.87□□□□□ -0.35
SVIP-201ENST00000354193 TSPY26PQ9H489 355 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 BECN2A8MW95 431 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 UBE2HP62256 183 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 ONECUT3O60422 494 aaPredicted RBP12.87□□□□□ -0.35
SVIP-201ENST00000354193 SLURP2P0DP57 97 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 HMGB2P26583 209 aaKnown RBP12.87□□□□□ -0.35
SVIP-201ENST00000354193 TMOD2Q9NZR1 351 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 ITGB4P16144 1822 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 POLD1P28340 1107 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 TM4SF1P30408 202 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 OGFOD1Q8N543 542 aa12.87□□□□□ -0.35
SVIP-201ENST00000354193 ZNF274Q96GC6 653 aaPredicted RBP12.87□□□□□ -0.35
SVIP-201ENST00000354193 CDC27P30260 824 aa12.86□□□□□ -0.35
SVIP-201ENST00000354193 CLEC10AQ8IUN9 316 aa12.86□□□□□ -0.35
SVIP-201ENST00000354193 USP28Q96RU2 1077 aa12.86□□□□□ -0.35
SVIP-201ENST00000354193 ZNF277Q9NRM2 450 aaPredicted RBP12.86□□□□□ -0.35
SVIP-201ENST00000354193 TOGARAM1Q9Y4F4 1720 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms