RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 CCDC93Q567U6 631 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 SYCP3Q8IZU3 236 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 BCL2L12Q9HB09 334 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 ATRXP46100 2492 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 EFCAB8A8MWE9 144 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 PSMA7O14818 248 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 RWDD2BP57060 319 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 MRPL28Q13084 256 aaKnown RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 EXOC4Q96A65 974 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 GLE1Q53GS7 698 aaKnown RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 ISM2Q6H9L7 571 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 PDXDC1Q6P996 788 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 KIF6Q6ZMV9 814 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 ARHGAP18Q8N392 663 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 SLC12A7Q9Y666 1083 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 SSRP1Q08945 709 aaKnown RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 ZBTB41Q5SVQ8 909 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 HHATQ5VTY9 493 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 EFHD1Q9BUP0 239 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 ACTR5Q9H9F9 607 aaPredicted RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 ARHGAP44Q17R89 818 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 LGSNQ5TDP6 509 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 KIF14Q15058 1648 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 TLDC2A0PJX2 215 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 ARHGAP10A1A4S6 786 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 UAP1Q16222 522 aaPredicted RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 RAPGEF4Q8WZA2 1011 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 COQ7Q99807 217 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 SH3GL2Q99962 352 aa6.85□□□□□ -1.31
VCAN-203ENST00000343200 CNOT10Q9H9A5 744 aaKnown RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 NOP53Q9NZM5 478 aaKnown RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 DDX41Q9UJV9 622 aaKnown RBP6.85□□□□□ -1.31
VCAN-203ENST00000343200 TOP2AP11388 1531 aaKnown RBP6.84□□□□□ -1.31
VCAN-203ENST00000343200 SYCE1Q8N0S2 351 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 STK10O94804 968 aaKnown RBP6.84□□□□□ -1.31
VCAN-203ENST00000343200 TRAF1Q13077 416 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 IFT88Q13099 833 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 NUTM2DQ5VT03 806 aaPredicted RBP6.84□□□□□ -1.31
VCAN-203ENST00000343200 KRT80Q6KB66 452 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 NUTM2AQ8IVF1 878 aaPredicted RBP6.84□□□□□ -1.31
VCAN-203ENST00000343200 CCDC197Q8NCU1 140 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 ZNF653Q96CK0 615 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 CEP19Q96LK0 163 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 BAG2O95816 211 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 STX2P32856 288 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 FLOT2Q14254 428 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 RAB3GAP1Q15042 981 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 BMP2KLQ5H9B9 411 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 RASGRF2O14827 1237 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 MCF2LO15068 1137 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 TAF11Q15544 211 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 KRT71Q3SY84 523 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 BCAS4Q8TDM0 211 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 PPWD1Q96BP3 646 aaKnown RBP6.84□□□□□ -1.31
VCAN-203ENST00000343200 MAD1L1Q9Y6D9 718 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 ATP2B2Q01814 1243 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 TADA2BQ86TJ2 420 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 ANLNQ9NQW6 1124 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 RASSF10A6NK89 507 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 XPOTO43592 962 aaKnown RBP6.84□□□□□ -1.31
VCAN-203ENST00000343200 EEF2P13639 858 aaKnown RBP6.84□□□□□ -1.31
VCAN-203ENST00000343200 EEF1B2P24534 225 aaKnown RBP6.84□□□□□ -1.31
VCAN-203ENST00000343200 CTNNA1P35221 906 aaKnown RBP6.84□□□□□ -1.31
VCAN-203ENST00000343200 EHMT1Q9H9B1 1298 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 SLC24A3Q9HC58 644 aa6.84□□□□□ -1.31
VCAN-203ENST00000343200 OCA2Q04671 838 aa6.84□□□□□ -1.32
VCAN-203ENST00000343200 CUL4BQ13620 913 aa6.84□□□□□ -1.32
VCAN-203ENST00000343200 CCDC125Q86Z20 511 aa6.84□□□□□ -1.32
VCAN-203ENST00000343200 APLFQ8IW19 511 aaPredicted RBP6.84□□□□□ -1.32
VCAN-203ENST00000343200 SNX29Q8TEQ0 813 aa6.84□□□□□ -1.32
VCAN-203ENST00000343200 PHKBQ93100 1093 aa6.84□□□□□ -1.32
VCAN-203ENST00000343200 C10orf88Q9H8K7 445 aa6.84□□□□□ -1.32
VCAN-203ENST00000343200 CNPY2Q9Y2B0 182 aa6.84□□□□□ -1.32
VCAN-203ENST00000343200 FRMD4BQ9Y2L6 1034 aa6.84□□□□□ -1.32
VCAN-203ENST00000343200 EHBP1L1Q8N3D4 1523 aa6.84□□□□□ -1.32
VCAN-203ENST00000343200 CCDC194A0A1B0GVG4 234 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 WDR46O15213 610 aaKnown RBP6.83□□□□□ -1.32
VCAN-203ENST00000343200 ZNF500O60304 480 aaPredicted RBP6.83□□□□□ -1.32
VCAN-203ENST00000343200 DDIT3P35638 169 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 TTF1Q15361 905 aaPredicted RBP6.83□□□□□ -1.32
VCAN-203ENST00000343200 FAM133BQ5BKY9 247 aaKnown RBP6.83□□□□□ -1.32
VCAN-203ENST00000343200 SLC30A9Q6PML9 568 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 USP48Q86UV5 1035 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 ZNF513Q8N8E2 541 aaPredicted RBP6.83□□□□□ -1.32
VCAN-203ENST00000343200 KRT5P13647 590 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 UTP14AQ9BVJ6 771 aaKnown RBP6.83□□□□□ -1.32
VCAN-203ENST00000343200 RBSNQ9H1K0 784 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 BAG5Q9UL15 447 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 PIKFYVEQ9Y2I7 2098 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 IQCA1LA6NCM1 817 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 TEKT2Q9UIF3 430 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 GPRASP1Q5JY77 1395 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 PSMD2Q13200 908 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 NBPF20Q3BBV1 942 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 SCYL3Q8IZE3 742 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 ERMNQ8TAM6 284 aa6.83□□□□□ -1.32
VCAN-203ENST00000343200 LTV1Q96GA3 475 aaPredicted RBP6.83□□□□□ -1.32
VCAN-203ENST00000343200 CALR3Q96L12 384 aaKnown RBP6.83□□□□□ -1.32
VCAN-203ENST00000343200 POLR3CQ9BUI4 534 aaPredicted RBP6.83□□□□□ -1.32
VCAN-203ENST00000343200 UTP6Q9NYH9 597 aaKnown RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms