RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ADH5P11766 374 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 ERVK-24P63145 666 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 ID3Q02535 119 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 SOX4Q06945 474 aaPredicted RBP5.38□□□□□ -1.55
HMGB1-201ENST00000326004 APOBRQ0VD83 1088 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 KCNMA1Q12791 1236 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 COL9A2Q14055 689 aaPredicted RBP5.38□□□□□ -1.55
HMGB1-201ENST00000326004 MBTPS1Q14703 1052 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 CWF19L2Q2TBE0 894 aaKnown RBP5.38□□□□□ -1.55
HMGB1-201ENST00000326004 UVSSAQ2YD98 709 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 ZC3H12AQ5D1E8 599 aaKnown RBP5.38□□□□□ -1.55
HMGB1-201ENST00000326004 AKAP4Q5JQC9 854 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 VPS37DQ86XT2 251 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 AGGF1Q8N302 714 aaeCLIP5.38□□□□□ -1.555e-7■■■■□ 24.9
HMGB1-201ENST00000326004 WFDC12Q8WWY7 111 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 NKD1Q969G9 470 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 ELMO3Q96BJ8 720 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 EAF1Q96JC9 268 aaPredicted RBP5.38□□□□□ -1.55
HMGB1-201ENST00000326004 DCAF5Q96JK2 942 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 KRBA1A5PL33 1030 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 GLB1P16278 677 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 NOS3P29474 1203 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 TNNI2P48788 182 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 WIPI1Q5MNZ9 446 aaPredicted RBP5.37□□□□□ -1.55
HMGB1-201ENST00000326004 LRFN4Q6PJG9 635 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.37□□□□□ -1.55
HMGB1-201ENST00000326004 REC114Q7Z4M0 266 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 TXNRD3Q86VQ6 643 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 SLITRK4Q8IW52 837 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 C12orf50Q8NA57 414 aaPredicted RBP5.37□□□□□ -1.55
HMGB1-201ENST00000326004 PLPPR2Q96GM1 343 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 SEC16BQ96JE7 1060 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 ATXN3LQ9H3M9 355 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 GSX1Q9H4S2 264 aaPredicted RBP5.37□□□□□ -1.55
HMGB1-201ENST00000326004 UBP1Q9NZI7 540 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 CRIM1Q9NZV1 1036 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 AP4E1Q9UPM8 1137 aa5.37□□□□□ -1.55
HMGB1-201ENST00000326004 GFRA2O00451 464 aa5.36□□□□□ -1.55
HMGB1-201ENST00000326004 SART1O43290 800 aaKnown RBP5.36□□□□□ -1.55
HMGB1-201ENST00000326004 ALX3O95076 343 aa5.36□□□□□ -1.55
HMGB1-201ENST00000326004 CRKP46108 304 aa5.36□□□□□ -1.55
HMGB1-201ENST00000326004 IREB2P48200 963 aaKnown RBP5.36□□□□□ -1.55
HMGB1-201ENST00000326004 RASSF7Q02833 373 aa5.36□□□□□ -1.55
HMGB1-201ENST00000326004 INPP5AQ14642 412 aa5.36□□□□□ -1.55
HMGB1-201ENST00000326004 CYFIP1Q7L576 1253 aa5.36□□□□□ -1.55
HMGB1-201ENST00000326004 REXO1Q8N1G1 1221 aaKnown RBP5.36□□□□□ -1.55
HMGB1-201ENST00000326004 FANCD2OSQ96PS1 177 aa5.36□□□□□ -1.55
HMGB1-201ENST00000326004 PPP1R9AQ9ULJ8 1098 aa5.36□□□□□ -1.55
HMGB1-201ENST00000326004 HIF3AQ9Y2N7 669 aa5.36□□□□□ -1.55
HMGB1-201ENST00000326004 DCDC2CA8MYV0 355 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 FANCGO15287 622 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 TLR3O15455 904 aaKnown RBP5.35□□□□□ -1.55
HMGB1-201ENST00000326004 CHRNA4P43681 627 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 PREPP48147 710 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 ZNF165P49910 485 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 ARID5AQ03989 594 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 RING1Q06587 406 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 PDE4BQ07343 736 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 SEZ6Q53EL9 994 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 DYMQ7RTS9 669 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 CD163Q86VB7 1156 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 DZIP1LQ8IYY4 767 aaKnown RBP5.35□□□□□ -1.55
HMGB1-201ENST00000326004 C2CD4AQ8NCU7 369 aaPredicted RBP5.35□□□□□ -1.55
HMGB1-201ENST00000326004 RNF214Q8ND24 703 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 FBXO27Q8NI29 283 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 FAM46AQ96IP4 442 aaKnown RBP5.35□□□□□ -1.55
HMGB1-201ENST00000326004 GMLQ99445 158 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 PICK1Q9NRD5 415 aa5.35□□□□□ -1.55
HMGB1-201ENST00000326004 PRR36Q9H6K5 1346 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.34□□□□□ -1.55
HMGB1-201ENST00000326004 C1QTNF9BB2RNN3 333 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 GAS2O43903 313 aaKnown RBP5.34□□□□□ -1.55
HMGB1-201ENST00000326004 DRD2P14416 443 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 ATF4P18848 351 aaPredicted RBP5.34□□□□□ -1.55
HMGB1-201ENST00000326004 ASPAP45381 313 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 SOX9P48436 509 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 CDK8P49336 464 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 SF3A1Q15459 793 aaKnown RBP5.34□□□□□ -1.55
HMGB1-201ENST00000326004 ZBTB37Q5TC79 503 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.34□□□□□ -1.55
HMGB1-201ENST00000326004 C12orf40Q86WS4 652 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 KCT2Q8NC54 265 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 MEGF10Q96KG7 1140 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 UBL7Q96S82 380 aaPredicted RBP5.34□□□□□ -1.55
HMGB1-201ENST00000326004 YIPF2Q9BWQ6 316 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 WNT10AQ9GZT5 417 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 PIDD1Q9HB75 910 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 BRMS1Q9HCU9 246 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 DISC1Q9NRI5 854 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 STRIP2Q9ULQ0 834 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 ACTL7BQ9Y614 415 aa5.34□□□□□ -1.55
HMGB1-201ENST00000326004 PRAMEF27A3QJZ7 478 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 ATE1O95260 518 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 GDF11O95390 407 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 IMPDH2P12268 514 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 MCM4P33991 863 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 GATA4P43694 442 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 GSK3AP49840 483 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 USP11P51784 963 aa5.33□□□□□ -1.56
HMGB1-201ENST00000326004 MLECQ14165 292 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 171.6 ms