RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 A0A1B0GVL5 298 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 ITGA6P23229 1130 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 RPS6KB1P23443 525 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 PCK1P35558 622 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 PPFIA1Q13136 1202 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 AATKQ6ZMQ8 1374 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 SWAP70Q9UH65 585 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 ZNF215Q9UL58 517 aaPredicted RBP12.94□□□□□ -0.34
VPS39-201ENST00000318006 SYNMO15061 1565 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 TRIM75PA6NK02 468 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 TRIM7Q9C029 511 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 IQCGQ9H095 443 aaKnown RBP12.94□□□□□ -0.34
VPS39-201ENST00000318006 SNX14Q9Y5W7 946 aa12.94□□□□□ -0.34
VPS39-201ENST00000318006 RTL9Q8NET4 1388 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 SLC27A2O14975 620 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 PARP10Q53GL7 1025 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 BANK1Q8NDB2 785 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 ANKRD2Q9GZV1 360 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 MTRF1LQ9UGC7 380 aaKnown RBP12.93□□□□□ -0.34
VPS39-201ENST00000318006 METP08581 1390 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 BRD1O95696 1058 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 KRT13P13646 458 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 HPDP32754 393 aaPredicted RBP12.93□□□□□ -0.34
VPS39-201ENST00000318006 IGSF22Q8N9C0 903 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 NEK11Q8NG66 645 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 GOLGA5Q8TBA6 731 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 SEPT6Q14141 434 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 CABS1Q96KC9 395 aa12.93□□□□□ -0.34
VPS39-201ENST00000318006 NEBLO76041 1014 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 TRIM14Q14142 442 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 ERCC6LQ2NKX8 1250 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 FAM227BQ96M60 508 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 MCM9Q9NXL9 1143 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 GRIPAP1Q4V328 841 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 C8orf74Q6P047 294 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 HEATR3Q7Z4Q2 680 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 UBLCP1Q8WVY7 318 aaPredicted RBP12.92□□□□□ -0.34
VPS39-201ENST00000318006 USP44Q9H0E7 712 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 FEZ2Q9UHY8 353 aaPredicted RBP12.92□□□□□ -0.34
VPS39-201ENST00000318006 SERPINA10Q9UK55 444 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 NSFL1CQ9UNZ2 370 aaKnown RBP12.92□□□□□ -0.34
VPS39-201ENST00000318006 GIGYF1O75420 1035 aaPredicted RBP12.92□□□□□ -0.34
VPS39-201ENST00000318006 PAXIP1Q6ZW49 1069 aaPredicted RBP12.92□□□□□ -0.34
VPS39-201ENST00000318006 STXBP4Q6ZWJ1 553 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 INTS8Q75QN2 995 aaKnown RBP12.92□□□□□ -0.34
VPS39-201ENST00000318006 TBC1D5Q92609 795 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 CROCC2H7BZ55 1655 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 BICDL2A1A5D9 508 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 MBD4O95243 580 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 VIMP08670 466 aaKnown RBP12.92□□□□□ -0.34
VPS39-201ENST00000318006 KBTBD3Q8NAB2 608 aa12.92□□□□□ -0.34
VPS39-201ENST00000318006 DCAF8L1A6NGE4 600 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 SMIM23A6NLE4 172 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 PDE8AO60658 829 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 CALML3P27482 149 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 XAGE2Q96GT9 111 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 F8W031 263 aaPredicted RBP12.91□□□□□ -0.34
VPS39-201ENST00000318006 PLCG2P16885 1265 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 PUM3Q15397 648 aaKnown RBP12.91□□□□□ -0.34
VPS39-201ENST00000318006 APPBP2Q92624 585 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 ZNF594Q96JF6 807 aaPredicted RBP12.91□□□□□ -0.34
VPS39-201ENST00000318006 EFCAB6Q5THR3 1501 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 ZNF521Q96K83 1311 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 CYP26C1Q6V0L0 522 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 CACNA2D3Q8IZS8 1091 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 SSH3Q8TE77 659 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 LEO1Q8WVC0 666 aaPredicted RBP12.91□□□□□ -0.34
VPS39-201ENST00000318006 PRDM15P57071 1507 aaPredicted RBP12.91□□□□□ -0.34
VPS39-201ENST00000318006 ALDH3A1P30838 453 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 ASIC1P78348 528 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 RABEP2Q9H5N1 569 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 KCNK9Q9NPC2 374 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 HECW2Q9P2P5 1572 aa12.91□□□□□ -0.34
VPS39-201ENST00000318006 ATP2A1O14983 1001 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 ACTN2P35609 894 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 KRI1Q8N9T8 703 aaKnown RBP12.9□□□□□ -0.34
VPS39-201ENST00000318006 STMN2Q93045 179 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 ZC3H12CQ9C0D7 883 aaKnown RBP12.9□□□□□ -0.34
VPS39-201ENST00000318006 NAPAP54920 295 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 RUFY4Q6ZNE9 571 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 DNAJC10Q8IXB1 793 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 IFT20Q8IY31 132 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 DDX17Q92841 729 aaKnown RBP12.9□□□□□ -0.34
VPS39-201ENST00000318006 ATP7BP35670 1465 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 RXRAP19793 462 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 TSNAXIP1Q2TAA8 658 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 PNMA8AQ86V59 439 aaPredicted RBP12.9□□□□□ -0.34
VPS39-201ENST00000318006 DENND2AQ9ULE3 1009 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 CLASP1Q7Z460 1538 aa12.9□□□□□ -0.34
VPS39-201ENST00000318006 PLEKHG1Q9ULL1 1385 aa12.9□□□□□ -0.35
VPS39-201ENST00000318006 NEURL1BA8MQ27 555 aa12.9□□□□□ -0.35
VPS39-201ENST00000318006 EFCAB8A8MWE9 144 aa12.9□□□□□ -0.35
VPS39-201ENST00000318006 KCNQ3O43525 872 aa12.9□□□□□ -0.35
VPS39-201ENST00000318006 LDHBP07195 334 aaKnown RBP12.9□□□□□ -0.35
VPS39-201ENST00000318006 TRAF1Q13077 416 aa12.9□□□□□ -0.35
VPS39-201ENST00000318006 PICALMQ13492 652 aa12.9□□□□□ -0.35
VPS39-201ENST00000318006 PPP4R3AQ6IN85 833 aa12.9□□□□□ -0.35
VPS39-201ENST00000318006 CCDC26Q8TAB7 109 aa12.9□□□□□ -0.35
VPS39-201ENST00000318006 IQGAP3Q86VI3 1631 aa12.89□□□□□ -0.35
VPS39-201ENST00000318006 GBP1P32455 592 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms