RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 HELBQ8NG08 1087 aaPredicted RBP25.34■■□□□ 1.65
SHMT1-201ENST00000316694 TRMT112Q9UI30 125 aaKnown RBP25.34■■□□□ 1.65
SHMT1-201ENST00000316694 DHX8Q14562 1220 aaKnown RBP25.33■■□□□ 1.65
SHMT1-201ENST00000316694 PTPN21Q16825 1174 aa25.33■■□□□ 1.65
SHMT1-201ENST00000316694 LONRF3Q496Y0 759 aa25.33■■□□□ 1.65
SHMT1-201ENST00000316694 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.33■■□□□ 1.65
SHMT1-201ENST00000316694 ABCA3Q99758 1704 aa25.33■■□□□ 1.65
SHMT1-201ENST00000316694 CTDSPL2Q05D32 466 aa25.32■■□□□ 1.64
SHMT1-201ENST00000316694 OLFM4Q6UX06 510 aa25.32■■□□□ 1.64
SHMT1-201ENST00000316694 METTL16Q86W50 562 aaKnown RBP25.32■■□□□ 1.64
SHMT1-201ENST00000316694 CNNM3Q8NE01 707 aa25.32■■□□□ 1.64
SHMT1-201ENST00000316694 RGS22Q8NE09 1264 aa25.32■■□□□ 1.64
SHMT1-201ENST00000316694 STRBPQ96SI9 672 aaKnown RBP25.32■■□□□ 1.64
SHMT1-201ENST00000316694 FAM217BQ9NTX9 383 aaPredicted RBP25.32■■□□□ 1.64
SHMT1-201ENST00000316694 SLC12A7Q9Y666 1083 aa25.32■■□□□ 1.64
SHMT1-201ENST00000316694 SPECC1Q5M775 1068 aa25.32■■□□□ 1.64
SHMT1-201ENST00000316694 KCNH3Q9ULD8 1083 aa25.32■■□□□ 1.64
SHMT1-201ENST00000316694 IFIT3O14879 490 aaKnown RBP25.31■■□□□ 1.64
SHMT1-201ENST00000316694 SLC4A9Q96Q91 983 aa25.31■■□□□ 1.64
SHMT1-201ENST00000316694 ECM29Q5VYK3 1845 aa25.31■■□□□ 1.64
SHMT1-201ENST00000316694 TCRBV5S4A2TA0A5A2 114 aa25.31■■□□□ 1.64
SHMT1-201ENST00000316694 CBFA2T2O43439 604 aa25.31■■□□□ 1.64
SHMT1-201ENST00000316694 KCNJ6P48051 423 aa25.31■■□□□ 1.64
SHMT1-201ENST00000316694 SSRP1Q08945 709 aaKnown RBP25.31■■□□□ 1.64
SHMT1-201ENST00000316694 NAPBQ9H115 298 aa25.31■■□□□ 1.64
SHMT1-201ENST00000316694 MORC2Q9Y6X9 1032 aaPredicted RBP25.31■■□□□ 1.64
SHMT1-201ENST00000316694 CUTAO60888 179 aa25.3■■□□□ 1.64
SHMT1-201ENST00000316694 BTG4Q9NY30 223 aa25.3■■□□□ 1.64
SHMT1-201ENST00000316694 ZSWIM5Q9P217 1185 aa25.3■■□□□ 1.64
SHMT1-201ENST00000316694 GOLGA8FQ08AF8 430 aa25.3■■□□□ 1.64
SHMT1-201ENST00000316694 GOLGA8DPQ0D2H9 430 aa25.3■■□□□ 1.64
SHMT1-201ENST00000316694 KRBA2Q6ZNG9 492 aa25.3■■□□□ 1.64
SHMT1-201ENST00000316694 SGMS1Q86VZ5 419 aa25.3■■□□□ 1.64
SHMT1-201ENST00000316694 L2HGDHQ9H9P8 463 aa25.3■■□□□ 1.64
SHMT1-201ENST00000316694 FANCLQ9NW38 375 aa25.3■■□□□ 1.64
SHMT1-201ENST00000316694 PCDHA5Q9Y5H7 936 aa25.3■■□□□ 1.64
SHMT1-201ENST00000316694 ARID4AP29374 1257 aaPredicted RBP25.29■■□□□ 1.64
SHMT1-201ENST00000316694 HSP90AA4PQ58FG1 418 aa25.29■■□□□ 1.64
SHMT1-201ENST00000316694 FOXP4Q8IVH2 680 aaPredicted RBP25.29■■□□□ 1.64
SHMT1-201ENST00000316694 LRRN4CLQ8ND94 238 aa25.29■■□□□ 1.64
SHMT1-201ENST00000316694 EPB41L4AQ9HCS5 686 aaPredicted RBP25.29■■□□□ 1.64
SHMT1-201ENST00000316694 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.29■■□□□ 1.64
SHMT1-201ENST00000316694 FAM237AA0A1B0GTK4 181 aa25.29■■□□□ 1.64
SHMT1-201ENST00000316694 FOXN1O15353 648 aa25.29■■□□□ 1.64
SHMT1-201ENST00000316694 MBD4O95243 580 aa25.29■■□□□ 1.64
SHMT1-201ENST00000316694 UQCRFS1P1P0C7P4 283 aa25.29■■□□□ 1.64
SHMT1-201ENST00000316694 ERCC6LQ2NKX8 1250 aa25.29■■□□□ 1.64
SHMT1-201ENST00000316694 IFNL3Q8IZI9 196 aa25.29■■□□□ 1.64
SHMT1-201ENST00000316694 MAGEB6Q8N7X4 407 aa25.29■■□□□ 1.64
SHMT1-201ENST00000316694 TMEM232C9JQI7 657 aa25.28■■□□□ 1.64
SHMT1-201ENST00000316694 RRP12Q5JTH9 1297 aaKnown RBP25.28■■□□□ 1.64
SHMT1-201ENST00000316694 KRI1Q8N9T8 703 aaKnown RBP25.28■■□□□ 1.64
SHMT1-201ENST00000316694 TOMM22Q9NS69 142 aa25.28■■□□□ 1.64
SHMT1-201ENST00000316694 NOSTRINQ8IVI9 506 aa25.28■■□□□ 1.64
SHMT1-201ENST00000316694 ARMT1Q9H993 441 aa25.28■■□□□ 1.64
SHMT1-201ENST00000316694 DNAI1Q9UI46 699 aa25.28■■□□□ 1.64
SHMT1-201ENST00000316694 ZBTB1Q9Y2K1 713 aa25.28■■□□□ 1.64
SHMT1-201ENST00000316694 BTBD18B2RXH4 712 aa25.27■■□□□ 1.64
SHMT1-201ENST00000316694 PATL2C9JE40 543 aaKnown RBP25.27■■□□□ 1.64
SHMT1-201ENST00000316694 TOP1P11387 765 aaKnown RBP25.27■■□□□ 1.64
SHMT1-201ENST00000316694 GUCY1A2P33402 732 aa25.27■■□□□ 1.64
SHMT1-201ENST00000316694 PUM3Q15397 648 aaKnown RBP25.27■■□□□ 1.64
SHMT1-201ENST00000316694 STK11IPQ8N1F8 1099 aa25.27■■□□□ 1.64
SHMT1-201ENST00000316694 CCDC82Q8N4S0 544 aa25.27■■□□□ 1.64
SHMT1-201ENST00000316694 MYH3P11055 1940 aa25.27■■□□□ 1.64
SHMT1-201ENST00000316694 ITGB4P16144 1822 aa25.27■■□□□ 1.64
SHMT1-201ENST00000316694 LIFRP42702 1097 aa25.27■■□□□ 1.64
SHMT1-201ENST00000316694 SPATA5Q8NB90 893 aa25.27■■□□□ 1.64
SHMT1-201ENST00000316694 ZKSCAN3Q9BRR0 538 aa25.27■■□□□ 1.64
SHMT1-201ENST00000316694 UTP14AQ9BVJ6 771 aaKnown RBP25.27■■□□□ 1.64
SHMT1-201ENST00000316694 KCNJ14Q9UNX9 436 aa25.27■■□□□ 1.64
SHMT1-201ENST00000316694 SNAP23O00161 211 aa25.26■■□□□ 1.63
SHMT1-201ENST00000316694 PDE8AO60658 829 aa25.26■■□□□ 1.63
SHMT1-201ENST00000316694 CYP19A1P11511 503 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-201ENST00000316694 PDE4BQ07343 736 aa25.26■■□□□ 1.63
SHMT1-201ENST00000316694 VSTM4Q8IW00 320 aa25.26■■□□□ 1.63
SHMT1-201ENST00000316694 LPIN2Q92539 896 aa25.26■■□□□ 1.63
SHMT1-201ENST00000316694 TACC3Q9Y6A5 838 aa25.26■■□□□ 1.63
SHMT1-201ENST00000316694 FMNL1O95466 1100 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-201ENST00000316694 ETF1P62495 437 aaKnown RBP25.26■■□□□ 1.63
SHMT1-201ENST00000316694 CCDC93Q567U6 631 aa25.26■■□□□ 1.63
SHMT1-201ENST00000316694 KRT222Q8N1A0 295 aa25.26■■□□□ 1.63
SHMT1-201ENST00000316694 CCP110O43303 1012 aa25.25■■□□□ 1.63
SHMT1-201ENST00000316694 BMP6P22004 513 aa25.25■■□□□ 1.63
SHMT1-201ENST00000316694 SAFBQ15424 915 aaKnown RBP eCLIP25.25■■□□□ 1.63
SHMT1-201ENST00000316694 ALX1Q15699 326 aa25.25■■□□□ 1.63
SHMT1-201ENST00000316694 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP25.25■■□□□ 1.63
SHMT1-201ENST00000316694 MAP3K12Q12852 859 aa25.25■■□□□ 1.63
SHMT1-201ENST00000316694 DIS3L2Q8IYB7 885 aaKnown RBP25.25■■□□□ 1.63
SHMT1-201ENST00000316694 STK36Q9NRP7 1315 aa25.25■■□□□ 1.63
SHMT1-201ENST00000316694 GRIN1Q05586 938 aa25.24■■□□□ 1.63
SHMT1-201ENST00000316694 RASGRF1Q13972 1273 aa25.24■■□□□ 1.63
SHMT1-201ENST00000316694 AKNAD1Q5T1N1 836 aa25.24■■□□□ 1.63
SHMT1-201ENST00000316694 MFSD6Q6ZSS7 791 aa25.24■■□□□ 1.63
SHMT1-201ENST00000316694 CMTR1Q8N1G2 835 aaKnown RBP25.24■■□□□ 1.63
SHMT1-201ENST00000316694 WASF1Q92558 559 aa25.24■■□□□ 1.63
SHMT1-201ENST00000316694 PRKAB2O43741 272 aa25.24■■□□□ 1.63
SHMT1-201ENST00000316694 MMP1P03956 469 aa25.24■■□□□ 1.63
SHMT1-201ENST00000316694 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.24■■□□□ 1.63
SHMT1-201ENST00000316694 KIF20AO95235 890 aa25.23■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms