RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PXDNQ92626 1479 aa17.43■□□□□ 0.38
SHH-201ENST00000297261 NAA30Q147X3 362 aaPredicted RBP17.43■□□□□ 0.38
SHH-201ENST00000297261 DHX58Q96C10 678 aa17.43■□□□□ 0.38
SHH-201ENST00000297261 PRC1O43663 620 aa17.43■□□□□ 0.38
SHH-201ENST00000297261 MYO1BO43795 1136 aa17.43■□□□□ 0.38
SHH-201ENST00000297261 CCDC24Q8N4L8 307 aa17.43■□□□□ 0.38
SHH-201ENST00000297261 ZBTB43O43298 467 aa17.43■□□□□ 0.38
SHH-201ENST00000297261 RANBP6O60518 1105 aaKnown RBP17.43■□□□□ 0.38
SHH-201ENST00000297261 KCNQ4P56696 695 aa17.43■□□□□ 0.38
SHH-201ENST00000297261 MAP2K1Q02750 393 aaPredicted RBP17.43■□□□□ 0.38
SHH-201ENST00000297261 NYXQ9GZU5 481 aa17.43■□□□□ 0.38
SHH-201ENST00000297261 IL6STP40189 918 aaPredicted RBP17.43■□□□□ 0.38
SHH-201ENST00000297261 ETF1P62495 437 aaKnown RBP17.43■□□□□ 0.38
SHH-201ENST00000297261 FAM182BQ5T319 152 aa17.43■□□□□ 0.38
SHH-201ENST00000297261 CCDC43Q96MW1 224 aaKnown RBP17.43■□□□□ 0.38
SHH-201ENST00000297261 GREM2Q9H772 168 aa17.43■□□□□ 0.38
SHH-201ENST00000297261 A0A087WWV3 80 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 CKAP4Q07065 602 aaKnown RBP17.42■□□□□ 0.38
SHH-201ENST00000297261 ALS2CR12Q96Q35 445 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 HELLSQ9NRZ9 838 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 MRVI1Q9Y6F6 885 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 CUL4AQ13619 759 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 PUM3Q15397 648 aaKnown RBP17.42■□□□□ 0.38
SHH-201ENST00000297261 SOGA3Q5TF21 947 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 GOPCQ9HD26 462 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 MEGF6O75095 1541 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 NF2P35240 595 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 CCDC96Q2M329 555 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 CERS3Q8IU89 383 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 TRIM47Q96LD4 638 aa17.42■□□□□ 0.38
SHH-201ENST00000297261 CYP7A1P22680 504 aa17.41■□□□□ 0.38
SHH-201ENST00000297261 ZAP70P43403 619 aa17.41■□□□□ 0.38
SHH-201ENST00000297261 SEC62Q99442 399 aaKnown RBP17.41■□□□□ 0.38
SHH-201ENST00000297261 BMP2KQ9NSY1 1161 aaPredicted RBP17.41■□□□□ 0.38
SHH-201ENST00000297261 IMPACTQ9P2X3 320 aa17.41■□□□□ 0.38
SHH-201ENST00000297261 H7C1W4 665 aa17.41■□□□□ 0.38
SHH-201ENST00000297261 SYCP1Q15431 976 aa17.41■□□□□ 0.38
SHH-201ENST00000297261 CTAGE1Q96RT6 745 aa17.41■□□□□ 0.38
SHH-201ENST00000297261 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.41■□□□□ 0.38
SHH-201ENST00000297261 GBP2P32456 591 aaPredicted RBP17.41■□□□□ 0.38
SHH-201ENST00000297261 KLHL34Q8N239 644 aa17.41■□□□□ 0.38
SHH-201ENST00000297261 NAA15Q9BXJ9 866 aaKnown RBP17.41■□□□□ 0.38
SHH-201ENST00000297261 MAGEB6Q8N7X4 407 aa17.41■□□□□ 0.38
SHH-201ENST00000297261 TCEAL9Q9UHQ7 104 aa17.41■□□□□ 0.38
SHH-201ENST00000297261 NLRP5P59047 1200 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 EHBP1Q8NDI1 1231 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 TPCN1Q9ULQ1 816 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 CPDO75976 1380 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 TMCO5BA8MYB1 307 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 ARHGAP6O43182 974 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 ZNF202O95125 648 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 GDAP1L1Q96MZ0 367 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 AKR1B15C9JRZ8 316 aaPredicted RBP17.4■□□□□ 0.38
SHH-201ENST00000297261 C6orf229H3BNL8 230 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 IDEP14735 1019 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 PDIA6Q15084 440 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 NLRP10Q86W26 655 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 CTCFLQ8NI51 663 aaPredicted RBP17.4■□□□□ 0.38
SHH-201ENST00000297261 FAM76AQ8TAV0 307 aa17.4■□□□□ 0.38
SHH-201ENST00000297261 CYLC1P35663 651 aaPredicted RBP17.39■□□□□ 0.38
SHH-201ENST00000297261 UBA7P41226 1012 aa17.39■□□□□ 0.38
SHH-201ENST00000297261 USP5P45974 858 aa17.39■□□□□ 0.38
SHH-201ENST00000297261 HLFQ16534 295 aa17.39■□□□□ 0.38
SHH-201ENST00000297261 TRAPPC3LQ5T215 181 aa17.39■□□□□ 0.38
SHH-201ENST00000297261 HAUS7Q99871 368 aa17.39■□□□□ 0.38
SHH-201ENST00000297261 MIGA1Q8NAN2 632 aa17.39■□□□□ 0.37
SHH-201ENST00000297261 LSG1Q9H089 658 aaKnown RBP17.39■□□□□ 0.37
SHH-201ENST00000297261 NCBP1Q09161 790 aaKnown RBP17.39■□□□□ 0.37
SHH-201ENST00000297261 SLC4A4Q9Y6R1 1079 aa17.39■□□□□ 0.37
SHH-201ENST00000297261 IKQ13123 557 aaPredicted RBP17.39■□□□□ 0.37
SHH-201ENST00000297261 CCT6AP40227 531 aaKnown RBP17.38■□□□□ 0.37
SHH-201ENST00000297261 ATP2B2Q01814 1243 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 IGSF22Q8N9C0 903 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 LPIN2Q92539 896 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 MRFAP1L1Q96HT8 127 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 OPA1O60313 960 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 NOP2P46087 812 aaKnown RBP17.38■□□□□ 0.37
SHH-201ENST00000297261 ADCK5Q3MIX3 580 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 ATL3Q6DD88 541 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 MFSD6Q6ZSS7 791 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 BRAPQ7Z569 592 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 AFAP1L1Q8TED9 768 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 USP28Q96RU2 1077 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 GOLGA6L10A0A0M3HER8 536 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 ADORA1P30542 326 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 PPARDQ03181 441 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 SPAG1Q07617 926 aa17.38■□□□□ 0.37
SHH-201ENST00000297261 RNF41Q9H4P4 317 aaPredicted RBP17.38■□□□□ 0.37
SHH-201ENST00000297261 THRAP3Q9Y2W1 955 aaKnown RBP17.38■□□□□ 0.37
SHH-201ENST00000297261 ST5P78524 1137 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 SF3B2Q13435 895 aaKnown RBP17.37■□□□□ 0.37
SHH-201ENST00000297261 SEPT7Q16181 437 aaKnown RBP17.37■□□□□ 0.37
SHH-201ENST00000297261 APPBP2Q92624 585 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 NFE2L3Q9Y4A8 694 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 RGS12O14924 1447 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 AKAP12Q02952 1782 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 KRT86O43790 486 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 SEC31AO94979 1220 aaKnown RBP17.37■□□□□ 0.37
SHH-201ENST00000297261 TUBBP07437 444 aa17.37■□□□□ 0.37
SHH-201ENST00000297261 TM6SF1Q9BZW5 370 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms