RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 METTL16Q86W50 562 aaKnown RBP11.72□□□□□ -0.53
COPB1-201ENST00000249923 OSBPL5Q9H0X9 879 aaPredicted RBP11.72□□□□□ -0.53
COPB1-201ENST00000249923 PRDM4Q9UKN5 801 aa11.72□□□□□ -0.53
COPB1-201ENST00000249923 A0A1B0GUL6 1792 aa11.72□□□□□ -0.53
COPB1-201ENST00000249923 CASZ1Q86V15 1759 aa11.72□□□□□ -0.53
COPB1-201ENST00000249923 SMTNL1A8MU46 457 aa11.72□□□□□ -0.53
COPB1-201ENST00000249923 GSG1L2A8MUP6 293 aa11.72□□□□□ -0.53
COPB1-201ENST00000249923 TOB1P50616 345 aaPredicted RBP11.72□□□□□ -0.53
COPB1-201ENST00000249923 SUSD4Q5VX71 490 aa11.72□□□□□ -0.53
COPB1-201ENST00000249923 ARMT1Q9H993 441 aa11.72□□□□□ -0.53
COPB1-201ENST00000249923 IFNKQ9P0W0 207 aa11.72□□□□□ -0.53
COPB1-201ENST00000249923 CICQ96RK0 1608 aaPredicted RBP11.71□□□□□ -0.53
COPB1-201ENST00000249923 PNOCQ13519 176 aa11.71□□□□□ -0.53
COPB1-201ENST00000249923 SGMS1Q86VZ5 419 aa11.71□□□□□ -0.53
COPB1-201ENST00000249923 CMTR1Q8N1G2 835 aaKnown RBP11.71□□□□□ -0.53
COPB1-201ENST00000249923 TUBE1Q9UJT0 475 aa11.71□□□□□ -0.53
COPB1-201ENST00000249923 COL1A1P02452 1464 aaPredicted RBP11.71□□□□□ -0.53
COPB1-201ENST00000249923 DHX16O60231 1041 aaKnown RBP11.71□□□□□ -0.54
COPB1-201ENST00000249923 PDE8AO60658 829 aa11.71□□□□□ -0.54
COPB1-201ENST00000249923 MBD4O95243 580 aa11.71□□□□□ -0.54
COPB1-201ENST00000249923 APPP05067 770 aa11.71□□□□□ -0.54
COPB1-201ENST00000249923 SMAP1Q8IYB5 467 aaPredicted RBP11.71□□□□□ -0.54
COPB1-201ENST00000249923 IFNL3Q8IZI9 196 aa11.71□□□□□ -0.54
COPB1-201ENST00000249923 LCORLQ8N3X6 602 aa11.71□□□□□ -0.54
COPB1-201ENST00000249923 MAGEB6Q8N7X4 407 aa11.71□□□□□ -0.54
COPB1-201ENST00000249923 SPATA5Q8NB90 893 aa11.71□□□□□ -0.54
COPB1-201ENST00000249923 LRRN4CLQ8ND94 238 aa11.71□□□□□ -0.54
COPB1-201ENST00000249923 TEX13AQ9BXU3 409 aaPredicted RBP11.71□□□□□ -0.54
COPB1-201ENST00000249923 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.71□□□□□ -0.545e-7■■■□□ 17.7
COPB1-201ENST00000249923 FAM237AA0A1B0GTK4 181 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 NLRP12P59046 1061 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 GNL2Q13823 731 aaKnown RBP11.7□□□□□ -0.54
COPB1-201ENST00000249923 LRRFIP1Q32MZ4 808 aaKnown RBP11.7□□□□□ -0.54
COPB1-201ENST00000249923 SPECC1Q5M775 1068 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 DZIP3Q86Y13 1208 aaKnown RBP11.7□□□□□ -0.54
COPB1-201ENST00000249923 HOMER1Q86YM7 354 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 ZKSCAN3Q9BRR0 538 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 SLC3A2P08195 630 aaKnown RBP11.7□□□□□ -0.54
COPB1-201ENST00000249923 ZSCAN20P17040 1043 aaPredicted RBP11.7□□□□□ -0.54
COPB1-201ENST00000249923 PDE4BQ07343 736 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 PUM3Q15397 648 aaKnown RBP11.7□□□□□ -0.54
COPB1-201ENST00000249923 LONRF3Q496Y0 759 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 CEP135Q66GS9 1140 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 INTS5Q6P9B9 1019 aaKnown RBP11.7□□□□□ -0.54
COPB1-201ENST00000249923 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.7□□□□□ -0.54
COPB1-201ENST00000249923 INTS13Q9NVM9 706 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 RESP18Q5W5W9 173 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 KCND1Q9NSA2 647 aa11.7□□□□□ -0.54
COPB1-201ENST00000249923 RREB1Q92766 1687 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 LMOD1P29536 600 aaPredicted RBP11.69□□□□□ -0.54
COPB1-201ENST00000249923 BCAMP50895 628 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 LPIN2Q92539 896 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 NID2Q14112 1375 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 TNNT3P45378 269 aaPredicted RBP11.69□□□□□ -0.54
COPB1-201ENST00000249923 MDM2Q00987 491 aaPredicted RBP11.69□□□□□ -0.54
COPB1-201ENST00000249923 EVX2Q03828 476 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 GOLGA8FQ08AF8 430 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 GOLGA8DPQ0D2H9 430 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 TTF1Q15361 905 aaPredicted RBP11.69□□□□□ -0.54
COPB1-201ENST00000249923 ALX1Q15699 326 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 MED15Q96RN5 788 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 CACNA1SQ13698 1873 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 POLR3GO15318 223 aaPredicted RBP11.69□□□□□ -0.54
COPB1-201ENST00000249923 ZBTB43O43298 467 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 AIDAQ96BJ3 306 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 KCNJ14Q9UNX9 436 aa11.69□□□□□ -0.54
COPB1-201ENST00000249923 LAMB2P55268 1798 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 BTBD18B2RXH4 712 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 PATL2C9JE40 543 aaKnown RBP11.68□□□□□ -0.54
COPB1-201ENST00000249923 EIF5P55010 431 aaKnown RBP11.68□□□□□ -0.54
COPB1-201ENST00000249923 TMEM67Q5HYA8 995 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 SYNE3Q6ZMZ3 975 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 TMC6Q7Z403 805 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 ZNF215Q9UL58 517 aaPredicted RBP11.68□□□□□ -0.54
COPB1-201ENST00000249923 ERVV-1B6SEH8 477 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 TMEM232C9JQI7 657 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 PPP6R2O75170 966 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 SYKP43405 635 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 EP400Q96L91 3159 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 COL14A1Q05707 1796 aaKnown RBP11.68□□□□□ -0.54
COPB1-201ENST00000249923 GOLGA8AA7E2F4 631 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 WNT7AO00755 349 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 IL6STP40189 918 aaPredicted RBP11.68□□□□□ -0.54
COPB1-201ENST00000249923 LIFRP42702 1097 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 TRDNQ13061 729 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 NR5A1Q13285 461 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 C3orf67Q6ZVT6 689 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 CREBRFQ8IUR6 639 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 OXER1Q8TDS5 423 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 ZNF384Q8TF68 577 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 TMEM87BQ96K49 555 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 SLC26A6Q9BXS9 759 aa11.68□□□□□ -0.54
COPB1-201ENST00000249923 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.68□□□□□ -0.54
COPB1-201ENST00000249923 BAZ2AQ9UIF9 1905 aaKnown RBP11.67□□□□□ -0.54
COPB1-201ENST00000249923 MROH5Q6ZUA9 1318 aa11.67□□□□□ -0.54
COPB1-201ENST00000249923 SMC2O95347 1197 aa11.67□□□□□ -0.54
COPB1-201ENST00000249923 USP49Q70CQ1 688 aa11.67□□□□□ -0.54
COPB1-201ENST00000249923 MIGA1Q8NAN2 632 aa11.67□□□□□ -0.54
COPB1-201ENST00000249923 PPP1R13BQ96KQ4 1090 aa11.67□□□□□ -0.54
COPB1-201ENST00000249923 NAT10Q9H0A0 1025 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms