RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CALRP27797 417 aaKnown RBP4.89□□□□□ -1.63
USP53-205ENST00000509769 SMARCA4P51532 1647 aa4.89□□□□□ -1.63
USP53-205ENST00000509769 ACIN1Q9UKV3 1341 aaKnown RBP4.88□□□□□ -1.63
USP53-205ENST00000509769 PEG3Q9GZU2 1588 aa4.88□□□□□ -1.63
USP53-205ENST00000509769 FOXD1Q16676 465 aa4.87□□□□□ -1.63
USP53-205ENST00000509769 FBLN2P98095 1184 aa4.86□□□□□ -1.63
USP53-205ENST00000509769 DDRGK1Q96HY6 314 aa4.85□□□□□ -1.63
USP53-205ENST00000509769 CHMP7Q8WUX9 453 aaPredicted RBP4.85□□□□□ -1.63
USP53-205ENST00000509769 KDM6BO15054 1643 aa4.84□□□□□ -1.63
USP53-205ENST00000509769 SUPT5HO00267 1087 aaKnown RBP4.84□□□□□ -1.63
USP53-205ENST00000509769 PPM1GO15355 546 aaPredicted RBP4.84□□□□□ -1.63
USP53-205ENST00000509769 DIEXFQ68CQ4 756 aaKnown RBP4.84□□□□□ -1.64
USP53-205ENST00000509769 USP35Q9P2H5 1018 aa4.84□□□□□ -1.64
USP53-205ENST00000509769 GTF3C3Q9Y5Q9 886 aa4.84□□□□□ -1.64
USP53-205ENST00000509769 GAPVD1Q14C86 1478 aa4.83□□□□□ -1.64
USP53-205ENST00000509769 A0A0U1RQG5 324 aaPredicted RBP4.83□□□□□ -1.64
USP53-205ENST00000509769 SPATA31D1Q6ZQQ2 1576 aa4.83□□□□□ -1.64
USP53-205ENST00000509769 NEUROD1Q13562 356 aa4.82□□□□□ -1.64
USP53-205ENST00000509769 UPF2Q9HAU5 1272 aaKnown RBP4.82□□□□□ -1.64
USP53-205ENST00000509769 HECW2Q9P2P5 1572 aa4.82□□□□□ -1.64
USP53-205ENST00000509769 SYNJ2O15056 1496 aa4.82□□□□□ -1.64
USP53-205ENST00000509769 MAGI1Q96QZ7 1491 aaPredicted RBP4.82□□□□□ -1.64
USP53-205ENST00000509769 DMRT2Q9Y5R5 561 aa4.81□□□□□ -1.64
USP53-205ENST00000509769 ZBTB47Q9UFB7 747 aaPredicted RBP4.81□□□□□ -1.64
USP53-205ENST00000509769 ATP1B4Q9UN42 357 aaPredicted RBP4.81□□□□□ -1.64
USP53-205ENST00000509769 CNGB1Q14028 1251 aaPredicted RBP4.81□□□□□ -1.64
USP53-205ENST00000509769 BCL11AQ9H165 835 aa4.8□□□□□ -1.64
USP53-205ENST00000509769 CHD1O14646 1710 aa4.79□□□□□ -1.64
USP53-205ENST00000509769 ADGRL1O94910 1474 aa4.79□□□□□ -1.64
USP53-205ENST00000509769 L1TD1Q5T7N2 865 aaKnown RBP4.79□□□□□ -1.64
USP53-205ENST00000509769 TEX14Q8IWB6 1497 aa4.79□□□□□ -1.64
USP53-205ENST00000509769 CLASP1Q7Z460 1538 aa4.79□□□□□ -1.64
USP53-205ENST00000509769 GOLGA6L22H0YM25 854 aa4.78□□□□□ -1.64
USP53-205ENST00000509769 FAM69CQ0P6D2 419 aa4.78□□□□□ -1.64
USP53-205ENST00000509769 CFTRP13569 1480 aa4.78□□□□□ -1.64
USP53-205ENST00000509769 RSPH6AQ9H0K4 717 aa4.78□□□□□ -1.64
USP53-205ENST00000509769 EIF4G3O43432 1585 aaKnown RBP4.78□□□□□ -1.64
USP53-205ENST00000509769 PNNQ9H307 717 aaKnown RBP4.78□□□□□ -1.64
USP53-205ENST00000509769 KDM4FA0A1W2PPD8 638 aa4.77□□□□□ -1.65
USP53-205ENST00000509769 ABCC10Q5T3U5 1492 aa4.76□□□□□ -1.65
USP53-205ENST00000509769 BECN1Q14457 450 aa4.76□□□□□ -1.65
USP53-205ENST00000509769 HSP90AA1P07900 732 aaKnown RBP4.76□□□□□ -1.65
USP53-205ENST00000509769 CERKQ8TCT0 537 aa4.76□□□□□ -1.65
USP53-205ENST00000509769 URB2Q14146 1524 aaKnown RBP4.76□□□□□ -1.65
USP53-205ENST00000509769 GOLGA6L6A8MZA4 724 aa4.76□□□□□ -1.65
USP53-205ENST00000509769 HOMEZQ8IX15 550 aa4.75□□□□□ -1.65
USP53-205ENST00000509769 GRIN2BQ13224 1484 aa4.75□□□□□ -1.65
USP53-205ENST00000509769 DNMBPQ6XZF7 1577 aa4.75□□□□□ -1.65
USP53-205ENST00000509769 ANP32CO43423 234 aa4.75□□□□□ -1.65
USP53-205ENST00000509769 GOLGA6L3A6NEY3 463 aa4.75□□□□□ -1.65
USP53-205ENST00000509769 ZNF608Q9ULD9 1512 aaPredicted RBP4.75□□□□□ -1.65
USP53-205ENST00000509769 PRDM2Q13029 1718 aa4.74□□□□□ -1.65
USP53-205ENST00000509769 NRDCO43847 1150 aa4.74□□□□□ -1.65
USP53-205ENST00000509769 MAPKBP1O60336 1514 aa4.74□□□□□ -1.65
USP53-205ENST00000509769 CHAF1AQ13111 956 aaPredicted RBP4.74□□□□□ -1.65
USP53-205ENST00000509769 IQSEC2Q5JU85 1478 aa4.74□□□□□ -1.65
USP53-205ENST00000509769 TNNT3P45378 269 aaPredicted RBP4.74□□□□□ -1.65
USP53-205ENST00000509769 SETQ01105 290 aaPredicted RBP4.74□□□□□ -1.65
USP53-205ENST00000509769 MTERF4Q7Z6M4 381 aaKnown RBP4.73□□□□□ -1.65
USP53-205ENST00000509769 PHF23Q9BUL5 403 aaPredicted RBP4.72□□□□□ -1.65
USP53-205ENST00000509769 MAP7D2Q96T17 732 aa4.72□□□□□ -1.65
USP53-205ENST00000509769 TOPBP1Q92547 1522 aa4.72□□□□□ -1.65
USP53-205ENST00000509769 KIAA0586Q9BVV6 1533 aa4.71□□□□□ -1.66
USP53-205ENST00000509769 SNAPC4Q5SXM2 1469 aa4.71□□□□□ -1.66
USP53-205ENST00000509769 NAP1L5Q96NT1 182 aaPredicted RBP4.71□□□□□ -1.66
USP53-205ENST00000509769 MROH2BQ7Z745 1585 aa4.71□□□□□ -1.66
USP53-205ENST00000509769 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.71□□□□□ -1.66
USP53-205ENST00000509769 PLB1Q6P1J6 1458 aa4.71□□□□□ -1.66
USP53-205ENST00000509769 TAF3Q5VWG9 929 aa4.7□□□□□ -1.66
USP53-205ENST00000509769 GOLGA6L1Q8N7Z2 621 aa4.7□□□□□ -1.66
USP53-205ENST00000509769 HMGB1P1B2RPK0 211 aaPredicted RBP4.7□□□□□ -1.66
USP53-205ENST00000509769 CFAP44Q96MT7 982 aa4.7□□□□□ -1.66
USP53-205ENST00000509769 ARXQ96QS3 562 aa4.69□□□□□ -1.66
USP53-205ENST00000509769 POGZQ7Z3K3 1410 aa4.68□□□□□ -1.66
USP53-205ENST00000509769 PHLDB1Q86UU1 1377 aa4.68□□□□□ -1.66
USP53-205ENST00000509769 PODXL2Q9NZ53 605 aa4.68□□□□□ -1.66
USP53-205ENST00000509769 SOGA1O94964 1423 aa4.68□□□□□ -1.66
USP53-205ENST00000509769 APPP05067 770 aa4.67□□□□□ -1.66
USP53-205ENST00000509769 GLI2P10070 1586 aa4.67□□□□□ -1.66
USP53-205ENST00000509769 AQRO60306 1485 aaKnown RBP eCLIP4.67□□□□□ -1.66
USP53-205ENST00000509769 PTMAP06454 111 aaKnown RBP4.67□□□□□ -1.66
USP53-205ENST00000509769 NEFHP12036 1026 aa4.67□□□□□ -1.66
USP53-205ENST00000509769 ILDR2Q71H61 639 aa4.67□□□□□ -1.66
USP53-205ENST00000509769 DIP2BQ9P265 1576 aa4.66□□□□□ -1.66
USP53-205ENST00000509769 MSNP26038 577 aaKnown RBP4.66□□□□□ -1.66
USP53-205ENST00000509769 NOM1Q5C9Z4 860 aaKnown RBP4.66□□□□□ -1.66
USP53-205ENST00000509769 AMER1Q5JTC6 1135 aaPredicted RBP4.66□□□□□ -1.66
USP53-205ENST00000509769 TSPYL1Q9H0U9 437 aa4.66□□□□□ -1.66
USP53-205ENST00000509769 KIF13AQ9H1H9 1805 aa4.66□□□□□ -1.66
USP53-205ENST00000509769 HSP90AA2PQ14568 343 aaPredicted RBP4.65□□□□□ -1.66
USP53-205ENST00000509769 STK11IPQ8N1F8 1099 aa4.65□□□□□ -1.66
USP53-205ENST00000509769 PKNOX2Q96KN3 472 aa4.65□□□□□ -1.67
USP53-205ENST00000509769 PCF11O94913 1555 aaKnown RBP4.64□□□□□ -1.67
USP53-205ENST00000509769 DNTTIP2Q5QJE6 756 aaKnown RBP4.64□□□□□ -1.67
USP53-205ENST00000509769 NOP58Q9Y2X3 529 aaKnown RBP4.63□□□□□ -1.67
USP53-205ENST00000509769 TARBP1Q13395 1621 aaKnown RBP4.63□□□□□ -1.67
USP53-205ENST00000509769 TOP2AP11388 1531 aaKnown RBP4.63□□□□□ -1.67
USP53-205ENST00000509769 CEP170Q5SW79 1584 aa4.63□□□□□ -1.67
USP53-205ENST00000509769 CCDC66A2RUB6 948 aa4.63□□□□□ -1.67
USP53-205ENST00000509769 CANXP27824 592 aaKnown RBP4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms