RNA–Protein interactions for RNA: ENST00000640482.1

VEGFA-230, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,065 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-230ENST00000640482 SMIM7Q9BQ49 75 aa16.45■□□□□ 0.22
VEGFA-230ENST00000640482 TRAV26-2A0A0B4J265 109 aa16.44■□□□□ 0.22
VEGFA-230ENST00000640482 AMTP48728 403 aa16.44■□□□□ 0.22
VEGFA-230ENST00000640482 C20orf203Q8NBC4 194 aa16.44■□□□□ 0.22
VEGFA-230ENST00000640482 TEX261Q6UWH6 196 aa16.43■□□□□ 0.22
VEGFA-230ENST00000640482 TRAV8-4A0A0B4J246 113 aa16.42■□□□□ 0.22
VEGFA-230ENST00000640482 DEFB104AQ8WTQ1 72 aa16.42■□□□□ 0.22
VEGFA-230ENST00000640482 BORCS7Q96B45 105 aa16.42■□□□□ 0.22
VEGFA-230ENST00000640482 IGLV4-60A0A075B6I1 120 aa16.41■□□□□ 0.22
VEGFA-230ENST00000640482 FOXA3P55318 350 aaPredicted RBP16.41■□□□□ 0.22
VEGFA-230ENST00000640482 KRTAP26-1Q6PEX3 210 aa16.41■□□□□ 0.22
VEGFA-230ENST00000640482 SCXQ7RTU7 201 aa16.41■□□□□ 0.22
VEGFA-230ENST00000640482 LINC01551Q86U37 167 aa16.41■□□□□ 0.22
VEGFA-230ENST00000640482 IGLV10-54A0A075B6I4 117 aa16.4■□□□□ 0.22
VEGFA-230ENST00000640482 A0A1B0GVG6 124 aa16.4■□□□□ 0.22
VEGFA-230ENST00000640482 ZNF727A8MUV8 499 aa16.4■□□□□ 0.22
VEGFA-230ENST00000640482 PLA2G1BP04054 148 aaKnown RBP16.4■□□□□ 0.22
VEGFA-230ENST00000640482 LINC00528Q8N1L1 170 aa16.4■□□□□ 0.22
VEGFA-230ENST00000640482 RPL39LQ96EH5 51 aaKnown RBP16.4■□□□□ 0.22
VEGFA-230ENST00000640482 CHAC1Q9BUX1 264 aa16.4■□□□□ 0.22
VEGFA-230ENST00000640482 PRSS1P07477 247 aa16.39■□□□□ 0.21
VEGFA-230ENST00000640482 DGAT2L7PQ6IED9 249 aa16.39■□□□□ 0.21
VEGFA-230ENST00000640482 SRP19P09132 144 aaKnown RBP16.38■□□□□ 0.21
VEGFA-230ENST00000640482 TSKUQ8WUA8 353 aa16.38■□□□□ 0.21
VEGFA-230ENST00000640482 NCR2O95944 276 aa16.37■□□□□ 0.21
VEGFA-230ENST00000640482 GFRA4Q9GZZ7 299 aa16.37■□□□□ 0.21
VEGFA-230ENST00000640482 OSTCQ9NRP0 149 aa16.37■□□□□ 0.21
VEGFA-230ENST00000640482 CLRN3Q8NCR9 226 aa16.36■□□□□ 0.21
VEGFA-230ENST00000640482 A0A1B0GUT8 65 aa16.35■□□□□ 0.21
VEGFA-230ENST00000640482 FAM231BA6NCW3 169 aa16.35■□□□□ 0.21
VEGFA-230ENST00000640482 SDHAF1A6NFY7 115 aa16.35■□□□□ 0.21
VEGFA-230ENST00000640482 HIGD1CA8MV81 97 aa16.35■□□□□ 0.21
VEGFA-230ENST00000640482 APCSP02743 223 aa16.34■□□□□ 0.21
VEGFA-230ENST00000640482 AMMECR1LQ6DCA0 310 aa16.33■□□□□ 0.2
VEGFA-230ENST00000640482 CIRBP-AS1Q8TBR5 109 aa16.33■□□□□ 0.2
VEGFA-230ENST00000640482 H7C423 109 aa16.32■□□□□ 0.2
VEGFA-230ENST00000640482 FAM74A3Q4VXF1 159 aa16.32■□□□□ 0.2
VEGFA-230ENST00000640482 C9orf163Q8N9P6 203 aa16.32■□□□□ 0.2
VEGFA-230ENST00000640482 TMEM191AQ9H0A3 160 aa16.32■□□□□ 0.2
VEGFA-230ENST00000640482 SRRM2Q9UQ35 2752 aaKnown RBP16.31■□□□□ 0.2
VEGFA-230ENST00000640482 TRBV6-5A0A0K0K1A5 114 aa16.31■□□□□ 0.2
VEGFA-230ENST00000640482 I3L3M4 83 aa16.31■□□□□ 0.2
VEGFA-230ENST00000640482 PMCHP20382 165 aa16.3■□□□□ 0.2
VEGFA-230ENST00000640482 TMEM241Q24JQ0 296 aa16.3■□□□□ 0.2
VEGFA-230ENST00000640482 IGKV2D-29A0A075B6S2 120 aaPredicted RBP16.29■□□□□ 0.2
VEGFA-230ENST00000640482 hDV102S1A0JD36 115 aa16.29■□□□□ 0.2
VEGFA-230ENST00000640482 IGKV2-29A2NJV5 120 aaPredicted RBP16.29■□□□□ 0.2
VEGFA-230ENST00000640482 RNASEKQ6P5S7 137 aaKnown RBP16.29■□□□□ 0.2
VEGFA-230ENST00000640482 ST20Q9HBF5 79 aa16.29■□□□□ 0.2
VEGFA-230ENST00000640482 V9GYV3 84 aa16.29■□□□□ 0.2
VEGFA-230ENST00000640482 ISOC2Q96AB3 205 aa16.28■□□□□ 0.2
VEGFA-230ENST00000640482 AP5S1Q9NUS5 200 aa16.28■□□□□ 0.2
VEGFA-230ENST00000640482 IGKV3OR2-268A0A0C4DH90 116 aa16.27■□□□□ 0.2
VEGFA-230ENST00000640482 FGF6P10767 208 aa16.27■□□□□ 0.2
VEGFA-230ENST00000640482 CNBPP62633 177 aaKnown RBP16.27■□□□□ 0.2
VEGFA-230ENST00000640482 RIGQ13278 110 aa16.27■□□□□ 0.2
VEGFA-230ENST00000640482 MRAP2Q96G30 205 aa16.27■□□□□ 0.2
VEGFA-230ENST00000640482 ZNF25P17030 456 aaPredicted RBP16.26■□□□□ 0.19
VEGFA-230ENST00000640482 RAB4AP20338 218 aa16.26■□□□□ 0.19
VEGFA-230ENST00000640482 RPL23P62829 140 aaKnown RBP16.26■□□□□ 0.19
VEGFA-230ENST00000640482 RNF185Q96GF1 192 aa16.26■□□□□ 0.19
VEGFA-230ENST00000640482 MYCBP2O75592 4640 aa16.25■□□□□ 0.19
VEGFA-230ENST00000640482 GAGE12HA6NDE8 117 aa16.25■□□□□ 0.19
VEGFA-230ENST00000640482 GAS8-AS1O95177 125 aa16.25■□□□□ 0.19
VEGFA-230ENST00000640482 PEA15Q15121 130 aa16.25■□□□□ 0.19
VEGFA-230ENST00000640482 ADIRFQ15847 76 aa16.25■□□□□ 0.19
VEGFA-230ENST00000640482 NUP35Q8NFH5 326 aa16.25■□□□□ 0.19
VEGFA-230ENST00000640482 NAT8Q9UHE5 227 aa16.25■□□□□ 0.19
VEGFA-230ENST00000640482 TRAV16A0A0A6YYK6 109 aaPredicted RBP16.24■□□□□ 0.19
VEGFA-230ENST00000640482 CFAP161Q6P656 301 aa16.24■□□□□ 0.19
VEGFA-230ENST00000640482 AMN1Q8IY45 258 aa16.24■□□□□ 0.19
VEGFA-230ENST00000640482 TMEM101Q96IK0 257 aa16.24■□□□□ 0.19
VEGFA-230ENST00000640482 BTF3L4Q96K17 158 aa16.24■□□□□ 0.19
VEGFA-230ENST00000640482 NAT8BQ9UHF3 227 aa16.24■□□□□ 0.19
VEGFA-230ENST00000640482 SMDT1Q9H4I9 107 aa16.23■□□□□ 0.19
VEGFA-230ENST00000640482 TMEM242Q9NWH2 141 aa16.23■□□□□ 0.19
VEGFA-230ENST00000640482 C9JQL5 133 aa16.22■□□□□ 0.19
VEGFA-230ENST00000640482 TSHBP01222 138 aa16.22■□□□□ 0.19
VEGFA-230ENST00000640482 SDIM1Q6ZPB5 146 aa16.22■□□□□ 0.19
VEGFA-230ENST00000640482 CHCHD10Q8WYQ3 142 aaPredicted RBP16.22■□□□□ 0.19
VEGFA-230ENST00000640482 ESDP10768 282 aa16.21■□□□□ 0.19
VEGFA-230ENST00000640482 RPS10P46783 165 aaKnown RBP16.21■□□□□ 0.19
VEGFA-230ENST00000640482 POLR2KP53803 58 aaKnown RBP16.21■□□□□ 0.19
VEGFA-230ENST00000640482 TRBV27A0A0K0K1C4 114 aa16.2■□□□□ 0.18
VEGFA-230ENST00000640482 PPP1R17O96001 155 aa16.2■□□□□ 0.18
VEGFA-230ENST00000640482 OR5A1Q8NGJ0 315 aa16.2■□□□□ 0.18
VEGFA-230ENST00000640482 FLG2Q5D862 2391 aaPredicted RBP16.19■□□□□ 0.18
VEGFA-230ENST00000640482 IGHV3-64A0A075B6Q5 118 aa16.19■□□□□ 0.18
VEGFA-230ENST00000640482 SRSF3P84103 164 aaKnown RBP16.19■□□□□ 0.18
VEGFA-230ENST00000640482 C15orf56Q8N910 161 aa16.19■□□□□ 0.18
VEGFA-230ENST00000640482 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP16.19■□□□□ 0.18
VEGFA-230ENST00000640482 J3QL48 77 aa16.18■□□□□ 0.18
VEGFA-230ENST00000640482 SMKR1H3BMG3 65 aa16.17■□□□□ 0.18
VEGFA-230ENST00000640482 VCYO14598 125 aa16.17■□□□□ 0.18
VEGFA-230ENST00000640482 SLPIP03973 132 aa16.17■□□□□ 0.18
VEGFA-230ENST00000640482 HERC1Q15751 4861 aa16.17■□□□□ 0.18
VEGFA-230ENST00000640482 SMIM27A0A1W2PRY6 76 aa16.16■□□□□ 0.18
VEGFA-230ENST00000640482 C7orf77A4D0Y5 90 aa16.16■□□□□ 0.18
VEGFA-230ENST00000640482 KRTAP10-4P60372 401 aaPredicted RBP16.16■□□□□ 0.18
VEGFA-230ENST00000640482 DMBT1Q9UGM3 2413 aaPredicted RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 166 ms