RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 BATF3Q9NR55 127 aa10.29□□□□□ -0.76
CLN3-255ENST00000637100 GVQW2A0A096LPI5 108 aaPredicted RBP10.28□□□□□ -0.76
CLN3-255ENST00000637100 HMSDA8MTL9 139 aa10.28□□□□□ -0.76
CLN3-255ENST00000637100 MGPP08493 103 aa10.28□□□□□ -0.76
CLN3-255ENST00000637100 PRR3P79522 188 aaKnown RBP10.28□□□□□ -0.76
CLN3-255ENST00000637100 C9orf62Q8N4C0 152 aa10.28□□□□□ -0.76
CLN3-255ENST00000637100 OR2D3Q8NGH3 330 aa10.28□□□□□ -0.76
CLN3-255ENST00000637100 DPH3P1Q9H4G8 78 aa10.28□□□□□ -0.76
CLN3-255ENST00000637100 A0A0J9YXV3 536 aa10.27□□□□□ -0.77
CLN3-255ENST00000637100 TRGC1P0CF51 173 aa10.27□□□□□ -0.77
CLN3-255ENST00000637100 RAB5CP51148 216 aa10.27□□□□□ -0.77
CLN3-255ENST00000637100 CCL20P78556 96 aa10.27□□□□□ -0.77
CLN3-255ENST00000637100 GAGE12HA6NDE8 117 aa10.26□□□□□ -0.77
CLN3-255ENST00000637100 NTF3P20783 257 aa10.26□□□□□ -0.77
CLN3-255ENST00000637100 SRSF9Q13242 221 aaKnown RBP eCLIP10.26□□□□□ -0.77
CLN3-255ENST00000637100 COTL1Q14019 142 aa10.26□□□□□ -0.77
CLN3-255ENST00000637100 CENPWQ5EE01 88 aa10.26□□□□□ -0.77
CLN3-255ENST00000637100 LYZL1Q6UWQ5 148 aa10.26□□□□□ -0.77
CLN3-255ENST00000637100 MANBALQ9NQG1 85 aa10.26□□□□□ -0.77
CLN3-255ENST00000637100 A0A1B0GV50 99 aa10.25□□□□□ -0.77
CLN3-255ENST00000637100 CTRLP40313 264 aa10.25□□□□□ -0.77
CLN3-255ENST00000637100 AMTP48728 403 aa10.25□□□□□ -0.77
CLN3-255ENST00000637100 TRBV20OR9-2A0A075B6H5 130 aa10.24□□□□□ -0.77
CLN3-255ENST00000637100 XKRY2A2RUG3 117 aa10.24□□□□□ -0.77
CLN3-255ENST00000637100 SMLR1H3BR10 107 aa10.24□□□□□ -0.77
CLN3-255ENST00000637100 H7C423 109 aa10.24□□□□□ -0.77
CLN3-255ENST00000637100 SULT1A2P50226 295 aa10.24□□□□□ -0.77
CLN3-255ENST00000637100 TPPP3Q9BW30 176 aa10.24□□□□□ -0.77
CLN3-255ENST00000637100 UBE2L6O14933 153 aa10.23□□□□□ -0.77
CLN3-255ENST00000637100 BCL2L11O43521 198 aa10.23□□□□□ -0.77
CLN3-255ENST00000637100 NCR2O95944 276 aa10.23□□□□□ -0.77
CLN3-255ENST00000637100 MAJINQ3KP22 176 aa10.23□□□□□ -0.77
CLN3-255ENST00000637100 SPINK6Q6UWN8 80 aa10.23□□□□□ -0.77
CLN3-255ENST00000637100 STPG4Q8N801 248 aa10.23□□□□□ -0.77
CLN3-255ENST00000637100 GATD1Q8NB37 220 aa10.23□□□□□ -0.77
CLN3-255ENST00000637100 CHCHD10Q8WYQ3 142 aaPredicted RBP10.23□□□□□ -0.77
CLN3-255ENST00000637100 A0A096LNI7 61 aa10.22□□□□□ -0.77
CLN3-255ENST00000637100 RAB19A4D1S5 217 aa10.22□□□□□ -0.77
CLN3-255ENST00000637100 IFNA1P01562 189 aa10.22□□□□□ -0.77
CLN3-255ENST00000637100 FOXI1Q12951 378 aa10.22□□□□□ -0.77
CLN3-255ENST00000637100 EIF5AP63241 154 aaKnown RBP10.21□□□□□ -0.77
CLN3-255ENST00000637100 ODF1Q14990 250 aa10.21□□□□□ -0.77
CLN3-255ENST00000637100 HIGD2BQ4VC39 106 aa10.21□□□□□ -0.77
CLN3-255ENST00000637100 GTSF1Q8WW33 167 aa10.21□□□□□ -0.77
CLN3-255ENST00000637100 GNG13Q9P2W3 67 aa10.21□□□□□ -0.77
CLN3-255ENST00000637100 LINC00474Q9P2X8 69 aa10.21□□□□□ -0.77
CLN3-255ENST00000637100 GNG4P50150 75 aa10.2□□□□□ -0.78
CLN3-255ENST00000637100 Q6ZNX1 250 aa10.2□□□□□ -0.78
CLN3-255ENST00000637100 NUDT10Q8NFP7 164 aa10.2□□□□□ -0.78
CLN3-255ENST00000637100 NUDT11Q96G61 164 aa10.2□□□□□ -0.78
CLN3-255ENST00000637100 BIN3Q9NQY0 253 aa10.2□□□□□ -0.78
CLN3-255ENST00000637100 IGKV2-24A0A0C4DH68 120 aa10.19□□□□□ -0.78
CLN3-255ENST00000637100 PDE6DO43924 150 aa10.19□□□□□ -0.78
CLN3-255ENST00000637100 MEF2BQ02080 365 aaPredicted RBP10.19□□□□□ -0.78
CLN3-255ENST00000637100 KANTRA0A1W2PQU2 76 aa10.18□□□□□ -0.78
CLN3-255ENST00000637100 FAM231BA6NCW3 169 aa10.18□□□□□ -0.78
CLN3-255ENST00000637100 FGF6P10767 208 aa10.18□□□□□ -0.78
CLN3-255ENST00000637100 ZNF25P17030 456 aaPredicted RBP10.18□□□□□ -0.78
CLN3-255ENST00000637100 REG3GQ6UW15 175 aa10.18□□□□□ -0.78
CLN3-255ENST00000637100 OR5A1Q8NGJ0 315 aa10.18□□□□□ -0.78
CLN3-255ENST00000637100 FAM210AQ96ND0 272 aa10.18□□□□□ -0.78
CLN3-255ENST00000637100 PKIGQ9Y2B9 76 aa10.18□□□□□ -0.78
CLN3-255ENST00000637100 TRBV6-5A0A0K0K1A5 114 aa10.17□□□□□ -0.78
CLN3-255ENST00000637100 RGS21Q2M5E4 152 aa10.17□□□□□ -0.78
CLN3-255ENST00000637100 TRAV26-2A0A0B4J265 109 aa10.16□□□□□ -0.78
CLN3-255ENST00000637100 ESDP10768 282 aa10.16□□□□□ -0.78
CLN3-255ENST00000637100 TWIST1Q15672 202 aa10.16□□□□□ -0.78
CLN3-255ENST00000637100 TEX261Q6UWH6 196 aa10.16□□□□□ -0.78
CLN3-255ENST00000637100 Q6ZRP5 223 aa10.16□□□□□ -0.78
CLN3-255ENST00000637100 LYPD6BQ8NI32 183 aa10.16□□□□□ -0.78
CLN3-255ENST00000637100 RPL39LQ96EH5 51 aaKnown RBP10.16□□□□□ -0.78
CLN3-255ENST00000637100 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.15□□□□□ -0.78
CLN3-255ENST00000637100 IGHV1-58A0A0C4DH39 117 aa10.15□□□□□ -0.78
CLN3-255ENST00000637100 IGKV3OR2-268A0A0C4DH90 116 aa10.15□□□□□ -0.78
CLN3-255ENST00000637100 LINC00959A0A1B0GUT2 108 aa10.15□□□□□ -0.78
CLN3-255ENST00000637100 IGKV2-29A2NJV5 120 aaPredicted RBP10.15□□□□□ -0.78
CLN3-255ENST00000637100 SDHAF1A6NFY7 115 aa10.15□□□□□ -0.78
CLN3-255ENST00000637100 AMMECR1LQ6DCA0 310 aa10.15□□□□□ -0.78
CLN3-255ENST00000637100 MED9Q9NWA0 146 aa10.15□□□□□ -0.78
CLN3-255ENST00000637100 APCSP02743 223 aa10.14□□□□□ -0.79
CLN3-255ENST00000637100 TEX46H3BTG2 121 aa10.13□□□□□ -0.79
CLN3-255ENST00000637100 K7EN84 100 aa10.13□□□□□ -0.79
CLN3-255ENST00000637100 RNASEKQ6P5S7 137 aaKnown RBP10.13□□□□□ -0.79
CLN3-255ENST00000637100 MRPL52Q86TS9 123 aaKnown RBP10.13□□□□□ -0.79
CLN3-255ENST00000637100 CARD19Q96LW7 228 aa10.13□□□□□ -0.79
CLN3-255ENST00000637100 RPP21Q9H633 154 aaKnown RBP10.13□□□□□ -0.79
CLN3-255ENST00000637100 I3L3M4 83 aa10.12□□□□□ -0.79
CLN3-255ENST00000637100 CCL25O15444 150 aa10.12□□□□□ -0.79
CLN3-255ENST00000637100 BCL2P10415 239 aa10.12□□□□□ -0.79
CLN3-255ENST00000637100 FOXA3P55318 350 aaPredicted RBP10.12□□□□□ -0.79
CLN3-255ENST00000637100 OCC1Q8TAD7 63 aa10.12□□□□□ -0.79
CLN3-255ENST00000637100 XCL1P47992 114 aa10.11□□□□□ -0.79
CLN3-255ENST00000637100 PTTG1IPP53801 180 aa10.11□□□□□ -0.79
CLN3-255ENST00000637100 EIF5AL1Q6IS14 154 aaKnown RBP10.11□□□□□ -0.79
CLN3-255ENST00000637100 CD164L2Q6UWJ8 174 aa10.11□□□□□ -0.79
CLN3-255ENST00000637100 RNASE7Q9H1E1 156 aaKnown RBP10.11□□□□□ -0.79
CLN3-255ENST00000637100 CDC42SE2Q9NRR3 84 aa10.11□□□□□ -0.79
CLN3-255ENST00000637100 TSHBP01222 138 aa10.1□□□□□ -0.79
CLN3-255ENST00000637100 TAGLN2P37802 199 aaKnown RBP10.1□□□□□ -0.79
CLN3-255ENST00000637100 POLR2KP53803 58 aaKnown RBP10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms