RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 NPC2P61916 151 aa9.46□□□□□ -0.9
CCDC88A-214ENST00000621814 RHOHQ15669 191 aa9.46□□□□□ -0.9
CCDC88A-214ENST00000621814 RHODO00212 210 aa9.45□□□□□ -0.9
CCDC88A-214ENST00000621814 PRSS2P07478 247 aa9.45□□□□□ -0.9
CCDC88A-214ENST00000621814 ZNF22P17026 224 aaPredicted RBP9.45□□□□□ -0.9
CCDC88A-214ENST00000621814 SLC25A29Q8N8R3 303 aa9.45□□□□□ -0.9
CCDC88A-214ENST00000621814 C2CD3Q4AC94 2353 aa9.45□□□□□ -0.9
CCDC88A-214ENST00000621814 UBE2D1P51668 147 aa9.45□□□□□ -0.9
CCDC88A-214ENST00000621814 SMAGPQ0VAQ4 97 aa9.45□□□□□ -0.9
CCDC88A-214ENST00000621814 TMEM223A0PJW6 202 aa9.45□□□□□ -0.9
CCDC88A-214ENST00000621814 A4D1N5 150 aa9.44□□□□□ -0.9
CCDC88A-214ENST00000621814 PEMTQ9UBM1 199 aa9.44□□□□□ -0.9
CCDC88A-214ENST00000621814 DEFB113Q30KQ7 82 aa9.44□□□□□ -0.9
CCDC88A-214ENST00000621814 MAP6D1Q9H9H5 199 aa9.44□□□□□ -0.9
CCDC88A-214ENST00000621814 NBPF19A0A087WUL8 3843 aa9.43□□□□□ -0.9
CCDC88A-214ENST00000621814 J3QR89 54 aa9.43□□□□□ -0.9
CCDC88A-214ENST00000621814 M0R2P5 195 aa9.43□□□□□ -0.9
CCDC88A-214ENST00000621814 Q1RN00 199 aa9.43□□□□□ -0.9
CCDC88A-214ENST00000621814 AMELXQ99217 191 aa9.43□□□□□ -0.9
CCDC88A-214ENST00000621814 PRO0461Q9UI25 63 aa9.43□□□□□ -0.9
CCDC88A-214ENST00000621814 HIST2H2BCQ6DN03 193 aa9.43□□□□□ -0.9
CCDC88A-214ENST00000621814 MUSTN1Q8IVN3 82 aa9.43□□□□□ -0.9
CCDC88A-214ENST00000621814 LEPROTO15243 131 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 IGHV3-53P01767 116 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 NFE4Q86UQ8 179 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 APCP25054 2843 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 GAGE12HA6NDE8 117 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 TCL1BO95988 128 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 AZU1P20160 251 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 ZNF415Q09FC8 603 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 JMJD1CQ15652 2540 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 CFAP126Q5VTH2 177 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 TIMM21Q9BVV7 248 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 PRO1854Q9UHT4 67 aa9.42□□□□□ -0.9
CCDC88A-214ENST00000621814 AKAP9Q99996 3911 aa9.41□□□□□ -0.9
CCDC88A-214ENST00000621814 SPINK8P0C7L1 97 aa9.41□□□□□ -0.9
CCDC88A-214ENST00000621814 IGHV3-30-3P0DP02 117 aa9.41□□□□□ -0.9
CCDC88A-214ENST00000621814 SMCPP49901 116 aaPredicted RBP9.41□□□□□ -0.9
CCDC88A-214ENST00000621814 C10orf126Q8N4M7 172 aa9.41□□□□□ -0.9
CCDC88A-214ENST00000621814 A8MWV9 139 aa9.41□□□□□ -0.9
CCDC88A-214ENST00000621814 FSHBP01225 129 aa9.41□□□□□ -0.9
CCDC88A-214ENST00000621814 ACANP16112 2415 aa9.4□□□□□ -0.9
CCDC88A-214ENST00000621814 DEFB114Q30KQ6 69 aa9.4□□□□□ -0.9
CCDC88A-214ENST00000621814 ZNF843Q8N446 348 aa9.4□□□□□ -0.9
CCDC88A-214ENST00000621814 UBR5O95071 2799 aaPredicted RBP9.4□□□□□ -0.9
CCDC88A-214ENST00000621814 SIGMAR1Q99720 223 aa9.4□□□□□ -0.9
CCDC88A-214ENST00000621814 LINC00467Q9BRT7 94 aa9.4□□□□□ -0.9
CCDC88A-214ENST00000621814 TRGV1A0A0A0MS02 117 aa9.4□□□□□ -0.91
CCDC88A-214ENST00000621814 C4orf3Q8WVX3 66 aa9.4□□□□□ -0.91
CCDC88A-214ENST00000621814 ITPR3Q14573 2671 aa9.39□□□□□ -0.91
CCDC88A-214ENST00000621814 CR1P17927 2039 aa9.39□□□□□ -0.91
CCDC88A-214ENST00000621814 DGAT2L7PQ6IED9 249 aa9.39□□□□□ -0.91
CCDC88A-214ENST00000621814 STHQ8IWL8 128 aa9.39□□□□□ -0.91
CCDC88A-214ENST00000621814 WFDC11Q8NEX6 87 aa9.39□□□□□ -0.91
CCDC88A-214ENST00000621814 MTORP42345 2549 aa9.39□□□□□ -0.91
CCDC88A-214ENST00000621814 INSP01308 110 aa9.39□□□□□ -0.91
CCDC88A-214ENST00000621814 Q6ZUT4 128 aa9.39□□□□□ -0.91
CCDC88A-214ENST00000621814 RNF152Q8N8N0 203 aa9.39□□□□□ -0.91
CCDC88A-214ENST00000621814 FAM104AQ969W3 186 aa9.39□□□□□ -0.91
CCDC88A-214ENST00000621814 A0A0J9YXY3 114 aa9.38□□□□□ -0.91
CCDC88A-214ENST00000621814 A0A0U1RRA0 63 aa9.38□□□□□ -0.91
CCDC88A-214ENST00000621814 TMEM238C9JI98 176 aa9.38□□□□□ -0.91
CCDC88A-214ENST00000621814 DAND5Q8N907 189 aa9.38□□□□□ -0.91
CCDC88A-214ENST00000621814 FLNAP21333 2647 aaKnown RBP9.38□□□□□ -0.91
CCDC88A-214ENST00000621814 UBE2D3P61077 147 aa9.38□□□□□ -0.91
CCDC88A-214ENST00000621814 UBE2D2P62837 147 aa9.38□□□□□ -0.91
CCDC88A-214ENST00000621814 Q6ZSV7 163 aa9.38□□□□□ -0.91
CCDC88A-214ENST00000621814 GEMIN7Q9H840 131 aaKnown RBP9.38□□□□□ -0.91
CCDC88A-214ENST00000621814 CHCHD7Q9BUK0 85 aa9.37□□□□□ -0.91
CCDC88A-214ENST00000621814 ERG28Q9UKR5 140 aa9.37□□□□□ -0.91
CCDC88A-214ENST00000621814 EIF4EBP3O60516 100 aaPredicted RBP9.37□□□□□ -0.91
CCDC88A-214ENST00000621814 FOXI1Q12951 378 aa9.37□□□□□ -0.91
CCDC88A-214ENST00000621814 C11orf72Q8NBR9 251 aa9.37□□□□□ -0.91
CCDC88A-214ENST00000621814 ZNF625Q96I27 306 aaPredicted RBP9.37□□□□□ -0.91
CCDC88A-214ENST00000621814 NDUFA12Q9UI09 145 aa9.37□□□□□ -0.91
CCDC88A-214ENST00000621814 UBE2D4Q9Y2X8 147 aa9.37□□□□□ -0.91
CCDC88A-214ENST00000621814 NDUFA7O95182 113 aa9.36□□□□□ -0.91
CCDC88A-214ENST00000621814 ADAMTSL4-AS1Q5T5F5 129 aa9.36□□□□□ -0.91
CCDC88A-214ENST00000621814 ODF3L2Q3SX64 289 aa9.36□□□□□ -0.91
CCDC88A-214ENST00000621814 LYRM7Q5U5X0 104 aa9.36□□□□□ -0.91
CCDC88A-214ENST00000621814 C1QTNF4Q9BXJ3 329 aa9.36□□□□□ -0.91
CCDC88A-214ENST00000621814 C9JAW5 83 aa9.35□□□□□ -0.91
CCDC88A-214ENST00000621814 MRPS36P82909 103 aaKnown RBP9.35□□□□□ -0.91
CCDC88A-214ENST00000621814 DNAJC9-AS1A6NH13 148 aa9.35□□□□□ -0.91
CCDC88A-214ENST00000621814 WFDC10AQ9H1F0 79 aa9.35□□□□□ -0.91
CCDC88A-214ENST00000621814 PYGO1Q9Y3Y4 419 aa9.35□□□□□ -0.91
CCDC88A-214ENST00000621814 TMEM263Q8WUH6 116 aaKnown RBP9.34□□□□□ -0.91
CCDC88A-214ENST00000621814 CDKN2A-AS1Q9UH64 79 aa9.34□□□□□ -0.91
CCDC88A-214ENST00000621814 TRAV13-1A0A0B4J241 112 aa9.34□□□□□ -0.91
CCDC88A-214ENST00000621814 IGHV1-58A0A0C4DH39 117 aa9.34□□□□□ -0.91
CCDC88A-214ENST00000621814 CCL24O00175 119 aa9.34□□□□□ -0.91
CCDC88A-214ENST00000621814 IGHV3-33P01772 117 aa9.34□□□□□ -0.91
CCDC88A-214ENST00000621814 Q8N2B8 174 aa9.34□□□□□ -0.91
CCDC88A-214ENST00000621814 Q6ZTI0 123 aa9.33□□□□□ -0.92
CCDC88A-214ENST00000621814 CITED2Q99967 270 aaPredicted RBP9.33□□□□□ -0.92
CCDC88A-214ENST00000621814 C1orf158Q8N1D5 194 aa9.33□□□□□ -0.92
CCDC88A-214ENST00000621814 GAGE12JA6NER3 117 aa9.33□□□□□ -0.92
CCDC88A-214ENST00000621814 RPL35AP18077 110 aaKnown RBP9.33□□□□□ -0.92
CCDC88A-214ENST00000621814 GAGE4Q13068 117 aa9.33□□□□□ -0.92
CCDC88A-214ENST00000621814 GAGE5Q13069 117 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms