RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SMIM15Q7Z3B0 74 aa7.69□□□□□ -1.18
UPF3B-204ENST00000619445 RNF185Q96GF1 192 aa7.69□□□□□ -1.18
UPF3B-204ENST00000619445 CNFNQ9BYD5 112 aa7.69□□□□□ -1.18
UPF3B-204ENST00000619445 hDV102S1A0JD36 115 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 NTF3P20783 257 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 CTRLP40313 264 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 AMTP48728 403 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 SMCPP49901 116 aaPredicted RBP7.68□□□□□ -1.18
UPF3B-204ENST00000619445 LYZL1Q6UWQ5 148 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 SDIM1Q6ZPB5 146 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 SLC51BQ86UW2 128 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 C20orf203Q8NBC4 194 aa7.68□□□□□ -1.18
UPF3B-204ENST00000619445 IGLV10-54A0A075B6I4 117 aa7.67□□□□□ -1.18
UPF3B-204ENST00000619445 IGHV3-64A0A075B6Q5 118 aa7.67□□□□□ -1.18
UPF3B-204ENST00000619445 RAB19A4D1S5 217 aa7.67□□□□□ -1.18
UPF3B-204ENST00000619445 NCR2O95944 276 aa7.67□□□□□ -1.18
UPF3B-204ENST00000619445 FAM210AQ96ND0 272 aa7.67□□□□□ -1.18
UPF3B-204ENST00000619445 TRBV20OR9-2A0A075B6H5 130 aa7.66□□□□□ -1.18
UPF3B-204ENST00000619445 H7C423 109 aa7.66□□□□□ -1.18
UPF3B-204ENST00000619445 CIRBPQ14011 172 aaKnown RBP7.66□□□□□ -1.18
UPF3B-204ENST00000619445 TWIST1Q15672 202 aa7.66□□□□□ -1.18
UPF3B-204ENST00000619445 NUDT10Q8NFP7 164 aa7.66□□□□□ -1.18
UPF3B-204ENST00000619445 NUDT11Q96G61 164 aa7.66□□□□□ -1.18
UPF3B-204ENST00000619445 RPP21Q9H633 154 aaKnown RBP7.66□□□□□ -1.18
UPF3B-204ENST00000619445 TCTE3Q8IZS6 198 aa7.65□□□□□ -1.18
UPF3B-204ENST00000619445 PKIGQ9Y2B9 76 aa7.65□□□□□ -1.18
UPF3B-204ENST00000619445 IGLV4-60A0A075B6I1 120 aa7.64□□□□□ -1.19
UPF3B-204ENST00000619445 AMMECR1LQ6DCA0 310 aa7.64□□□□□ -1.19
UPF3B-204ENST00000619445 DPH3Q96FX2 82 aa7.64□□□□□ -1.19
UPF3B-204ENST00000619445 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.64□□□□□ -1.19
UPF3B-204ENST00000619445 TMEM250H0YL14 139 aa7.63□□□□□ -1.19
UPF3B-204ENST00000619445 Q6ZRU5 148 aa7.63□□□□□ -1.19
UPF3B-204ENST00000619445 LRP1Q07954 4544 aaKnown RBP7.63□□□□□ -1.19
UPF3B-204ENST00000619445 A8MWL6 223 aa7.62□□□□□ -1.19
UPF3B-204ENST00000619445 ZNF25P17030 456 aaPredicted RBP7.62□□□□□ -1.19
UPF3B-204ENST00000619445 GATD1Q8NB37 220 aa7.62□□□□□ -1.19
UPF3B-204ENST00000619445 APCSP02743 223 aa7.61□□□□□ -1.19
UPF3B-204ENST00000619445 BLOC1S1P78537 153 aa7.61□□□□□ -1.19
UPF3B-204ENST00000619445 CT83Q5H943 113 aa7.61□□□□□ -1.19
UPF3B-204ENST00000619445 C7orf33Q8WU49 177 aa7.61□□□□□ -1.19
UPF3B-204ENST00000619445 BORCS7Q96B45 105 aa7.61□□□□□ -1.19
UPF3B-204ENST00000619445 RNASE7Q9H1E1 156 aaKnown RBP7.61□□□□□ -1.19
UPF3B-204ENST00000619445 RPS10P46783 165 aaKnown RBP7.6□□□□□ -1.19
UPF3B-204ENST00000619445 FAM231DQ6ZW35 169 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 OCC1Q8TAD7 63 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 SPACA4Q8TDM5 124 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 TMEM101Q96IK0 257 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 BTF3L4Q96K17 158 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 GFRA4Q9GZZ7 299 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 PLA2G2DQ9UNK4 145 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 FAT3Q8TDW7 4589 aa7.6□□□□□ -1.19
UPF3B-204ENST00000619445 GAGE12HA6NDE8 117 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 SDHAF1A6NFY7 115 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 I3L3M4 83 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 K7EN84 100 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 GATCO43716 136 aaKnown RBP7.59□□□□□ -1.19
UPF3B-204ENST00000619445 NDUFS6O75380 124 aaKnown RBP7.59□□□□□ -1.19
UPF3B-204ENST00000619445 RNASEKQ6P5S7 137 aaKnown RBP7.59□□□□□ -1.19
UPF3B-204ENST00000619445 PLAC8Q9NZF1 115 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 LINC00474Q9P2X8 69 aa7.59□□□□□ -1.19
UPF3B-204ENST00000619445 A0A087WYN8 130 aa7.59□□□□□ -1.2
UPF3B-204ENST00000619445 GVQW2A0A096LPI5 108 aaPredicted RBP7.59□□□□□ -1.2
UPF3B-204ENST00000619445 TRBV6-5A0A0K0K1A5 114 aa7.59□□□□□ -1.2
UPF3B-204ENST00000619445 PANO1I0J062 215 aa7.59□□□□□ -1.2
UPF3B-204ENST00000619445 FGF6P10767 208 aa7.59□□□□□ -1.2
UPF3B-204ENST00000619445 FOXA3P55318 350 aaPredicted RBP7.59□□□□□ -1.2
UPF3B-204ENST00000619445 C15orf56Q8N910 161 aa7.59□□□□□ -1.2
UPF3B-204ENST00000619445 CHCHD10Q8WYQ3 142 aaPredicted RBP7.59□□□□□ -1.2
UPF3B-204ENST00000619445 PKHD1L1Q86WI1 4243 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 TRAV26-2A0A0B4J265 109 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 IGKV3OR2-268A0A0C4DH90 116 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 FAM231BA6NCW3 169 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 SLPIP03973 132 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 PMCHP20382 165 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 SMAGPQ0VAQ4 97 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 Q6ZNX1 250 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 OR5A1Q8NGJ0 315 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 GTSF1Q8WW33 167 aa7.58□□□□□ -1.2
UPF3B-204ENST00000619445 PPP1R17O96001 155 aa7.57□□□□□ -1.2
UPF3B-204ENST00000619445 RPL39LQ96EH5 51 aaKnown RBP7.57□□□□□ -1.2
UPF3B-204ENST00000619445 MRAP2Q96G30 205 aa7.57□□□□□ -1.2
UPF3B-204ENST00000619445 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.56□□□□□ -1.2
UPF3B-204ENST00000619445 A0A1B0GUT8 65 aa7.56□□□□□ -1.2
UPF3B-204ENST00000619445 IGKV2-29A2NJV5 120 aaPredicted RBP7.56□□□□□ -1.2
UPF3B-204ENST00000619445 HNRNPA3P51991 378 aaKnown RBP7.56□□□□□ -1.2
UPF3B-204ENST00000619445 COX6A2Q02221 97 aa7.56□□□□□ -1.2
UPF3B-204ENST00000619445 LYPD6BQ8NI32 183 aa7.56□□□□□ -1.2
UPF3B-204ENST00000619445 ST20Q9HBF5 79 aa7.56□□□□□ -1.2
UPF3B-204ENST00000619445 IGHV1-58A0A0C4DH39 117 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 CCL25O15444 150 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 CHTF8P0CG12 524 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 SS18Q15532 418 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 AKAP14Q86UN6 197 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 TSKUQ8WUA8 353 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 TMEM191AQ9H0A3 160 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 HMCN2Q8NDA2 5059 aa7.55□□□□□ -1.2
UPF3B-204ENST00000619445 TMEM238LA0A1B0GVL6 79 aa7.54□□□□□ -1.2
UPF3B-204ENST00000619445 ESDP10768 282 aa7.54□□□□□ -1.2
UPF3B-204ENST00000619445 FOXI1Q12951 378 aa7.54□□□□□ -1.2
UPF3B-204ENST00000619445 MAJINQ3KP22 176 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms