RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, human

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-222	ENST00000600320		Q8N3U1	123 aa		13.63	□□□□□ -0.23
SHKBP1-222	ENST00000600320	LYST	Q99698	3801 aa		13.62	□□□□□ -0.23
SHKBP1-222	ENST00000600320	IGHV1-24	A0A0C4DH33	117 aa		13.62	□□□□□ -0.23
SHKBP1-222	ENST00000600320	LOC389332	A0A1B0GUA5	103 aa		13.62	□□□□□ -0.23
SHKBP1-222	ENST00000600320	TRBV25-1	A0A075B6N4	114 aa		13.61	□□□□□ -0.23
SHKBP1-222	ENST00000600320	PRSS47	A8MTI9	375 aa		13.61	□□□□□ -0.23
SHKBP1-222	ENST00000600320	AMT	P48728	403 aa		13.61	□□□□□ -0.23
SHKBP1-222	ENST00000600320	NIT1	Q86X76	327 aa		13.61	□□□□□ -0.23
SHKBP1-222	ENST00000600320	MAP1LC3A	Q9H492	121 aa		13.61	□□□□□ -0.23
SHKBP1-222	ENST00000600320	DNAH10OS	P0CZ25	163 aa		13.6	□□□□□ -0.23
SHKBP1-222	ENST00000600320	RAB5A	P20339	215 aa		13.6	□□□□□ -0.23
SHKBP1-222	ENST00000600320	CHCHD5	Q9BSY4	110 aa		13.6	□□□□□ -0.23
SHKBP1-222	ENST00000600320	TMEM243	Q9BU79	118 aa		13.6	□□□□□ -0.23
SHKBP1-222	ENST00000600320	CHCHD7	Q9BUK0	85 aa		13.6	□□□□□ -0.23
SHKBP1-222	ENST00000600320		M0R2N4	97 aa		13.59	□□□□□ -0.23
SHKBP1-222	ENST00000600320	IGHV3-30	P01768	117 aa		13.59	□□□□□ -0.23
SHKBP1-222	ENST00000600320	IGHV3-33	P01772	117 aa		13.59	□□□□□ -0.23
SHKBP1-222	ENST00000600320	IGHV3-30-3	P0DP02	117 aa		13.59	□□□□□ -0.23
SHKBP1-222	ENST00000600320	IGHV3-30-5	P0DP03	117 aa		13.59	□□□□□ -0.23
SHKBP1-222	ENST00000600320	GAGE6	Q13070	117 aa		13.59	□□□□□ -0.23
SHKBP1-222	ENST00000600320	KRTAP1-5	Q9BYS1	174 aa		13.59	□□□□□ -0.23
SHKBP1-222	ENST00000600320	TCAP	O15273	167 aa		13.58	□□□□□ -0.24
SHKBP1-222	ENST00000600320	ESD	P10768	282 aa		13.58	□□□□□ -0.24
SHKBP1-222	ENST00000600320	LINC01556	Q5JQF7	62 aa		13.58	□□□□□ -0.24
SHKBP1-222	ENST00000600320	NBDY	A0A0U1RRE5	68 aa		13.57	□□□□□ -0.24
SHKBP1-222	ENST00000600320	TRGC2	P03986	189 aa		13.57	□□□□□ -0.24
SHKBP1-222	ENST00000600320	FCER1G	P30273	86 aa		13.57	□□□□□ -0.24
SHKBP1-222	ENST00000600320		Q8N8P6	123 aa		13.57	□□□□□ -0.24
SHKBP1-222	ENST00000600320	KIR2DL4	Q99706	377 aa		13.57	□□□□□ -0.24
SHKBP1-222	ENST00000600320	DNAH6	Q9C0G6	4158 aa		13.57	□□□□□ -0.24
SHKBP1-222	ENST00000600320	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	13.56	□□□□□ -0.24
SHKBP1-222	ENST00000600320	IGKV2-29	A2NJV5	120 aa	Predicted RBP	13.56	□□□□□ -0.24
SHKBP1-222	ENST00000600320	TMEM262	E9PQX1	116 aa		13.56	□□□□□ -0.24
SHKBP1-222	ENST00000600320	IFI27	P40305	119 aa	Predicted RBP	13.56	□□□□□ -0.24
SHKBP1-222	ENST00000600320		Q6ZR54	194 aa		13.56	□□□□□ -0.24
SHKBP1-222	ENST00000600320	MPV17L2	Q567V2	206 aa		13.55	□□□□□ -0.24
SHKBP1-222	ENST00000600320		Q8N976	141 aa		13.54	□□□□□ -0.24
SHKBP1-222	ENST00000600320	C18orf32	Q8TCD1	76 aa		13.54	□□□□□ -0.24
SHKBP1-222	ENST00000600320	RYR2	Q92736	4967 aa		13.53	□□□□□ -0.24
SHKBP1-222	ENST00000600320	RBX1	P62877	108 aa		13.53	□□□□□ -0.24
SHKBP1-222	ENST00000600320	NXT2	Q9NPJ8	142 aa	Known RBP	13.53	□□□□□ -0.24
SHKBP1-222	ENST00000600320	HYDIN	Q4G0P3	5121 aa		13.53	□□□□□ -0.24
SHKBP1-222	ENST00000600320		A0A087WX48	190 aa		13.52	□□□□□ -0.25
SHKBP1-222	ENST00000600320	UBE2L6	O14933	153 aa		13.52	□□□□□ -0.25
SHKBP1-222	ENST00000600320	KMT2A	Q03164	3969 aa		13.52	□□□□□ -0.25
SHKBP1-222	ENST00000600320	TTC32	Q5I0X7	151 aa		13.51	□□□□□ -0.25
SHKBP1-222	ENST00000600320	C20orf203	Q8NBC4	194 aa		13.51	□□□□□ -0.25
SHKBP1-222	ENST00000600320	PRSS3P2	Q8NHM4	247 aa		13.51	□□□□□ -0.25
SHKBP1-222	ENST00000600320	URB1-AS1	Q96HZ7	61 aa		13.51	□□□□□ -0.25
SHKBP1-222	ENST00000600320	IGLV4-60	A0A075B6I1	120 aa		13.5	□□□□□ -0.25
SHKBP1-222	ENST00000600320		H7C423	109 aa		13.5	□□□□□ -0.25
SHKBP1-222	ENST00000600320	FGF6	P10767	208 aa		13.5	□□□□□ -0.25
SHKBP1-222	ENST00000600320	PKIA	P61925	76 aa		13.5	□□□□□ -0.25
SHKBP1-222	ENST00000600320	KLK12	Q9UKR0	248 aa		13.49	□□□□□ -0.25
SHKBP1-222	ENST00000600320	TRAV9-2	A0A087WT02	112 aa		13.48	□□□□□ -0.25
SHKBP1-222	ENST00000600320	LINC01546	A6NGU7	62 aa		13.48	□□□□□ -0.25
SHKBP1-222	ENST00000600320	RPL39	P62891	51 aa	Known RBP	13.48	□□□□□ -0.25
SHKBP1-222	ENST00000600320	RNASEK	Q6P5S7	137 aa	Known RBP	13.48	□□□□□ -0.25
SHKBP1-222	ENST00000600320	C10orf126	Q8N4M7	172 aa		13.48	□□□□□ -0.25
SHKBP1-222	ENST00000600320		A0A1B0GUV1	79 aa		13.47	□□□□□ -0.25
SHKBP1-222	ENST00000600320	IBA57-AS1	B1ANH7	110 aa		13.47	□□□□□ -0.25
SHKBP1-222	ENST00000600320	LAGE3	Q14657	143 aa		13.47	□□□□□ -0.25
SHKBP1-222	ENST00000600320	AMMECR1L	Q6DCA0	310 aa		13.47	□□□□□ -0.25
SHKBP1-222	ENST00000600320	FA2H	Q7L5A8	372 aa		13.47	□□□□□ -0.25
SHKBP1-222	ENST00000600320		K7EMI3	77 aa		13.46	□□□□□ -0.25
SHKBP1-222	ENST00000600320		K7EP13	123 aa		13.46	□□□□□ -0.25
SHKBP1-222	ENST00000600320	ANG	P03950	147 aa	Known RBP	13.46	□□□□□ -0.25
SHKBP1-222	ENST00000600320	ORMDL2	Q53FV1	153 aa		13.46	□□□□□ -0.25
SHKBP1-222	ENST00000600320	UBE2D4	Q9Y2X8	147 aa		13.46	□□□□□ -0.25
SHKBP1-222	ENST00000600320	MRPL52	Q86TS9	123 aa	Known RBP	13.45	□□□□□ -0.26
SHKBP1-222	ENST00000600320	CLPSL2	Q6UWE3	100 aa		13.44	□□□□□ -0.26
SHKBP1-222	ENST00000600320	ENHO	Q6UWT2	76 aa		13.44	□□□□□ -0.26
SHKBP1-222	ENST00000600320	UBE2W	Q96B02	151 aa		13.44	□□□□□ -0.26
SHKBP1-222	ENST00000600320	TMEM18	Q96B42	140 aa		13.44	□□□□□ -0.26
SHKBP1-222	ENST00000600320	LINC00614	P0C842	121 aa		13.43	□□□□□ -0.26
SHKBP1-222	ENST00000600320	ZNF25	P17030	456 aa	Predicted RBP	13.43	□□□□□ -0.26
SHKBP1-222	ENST00000600320	C2orf66	Q6UXQ4	117 aa		13.43	□□□□□ -0.26
SHKBP1-222	ENST00000600320	LINC00269	Q8N2A0	174 aa		13.43	□□□□□ -0.26
SHKBP1-222	ENST00000600320	C6orf223	Q8N319	242 aa		13.43	□□□□□ -0.26
SHKBP1-222	ENST00000600320		Q9HAA7	133 aa		13.43	□□□□□ -0.26
SHKBP1-222	ENST00000600320	BTF3	P20290	206 aa	Known RBP	13.42	□□□□□ -0.26
SHKBP1-222	ENST00000600320		Q0VG73	95 aa		13.42	□□□□□ -0.26
SHKBP1-222	ENST00000600320	OR5A1	Q8NGJ0	315 aa		13.42	□□□□□ -0.26
SHKBP1-222	ENST00000600320	FAM104A	Q969W3	186 aa		13.42	□□□□□ -0.26
SHKBP1-222	ENST00000600320	TIMM21	Q9BVV7	248 aa		13.42	□□□□□ -0.26
SHKBP1-222	ENST00000600320	PRR34	Q9NV39	138 aa		13.42	□□□□□ -0.26
SHKBP1-222	ENST00000600320	C1orf134	Q5TEV5	83 aa		13.41	□□□□□ -0.26
SHKBP1-222	ENST00000600320		Q6ZUT4	128 aa		13.41	□□□□□ -0.26
SHKBP1-222	ENST00000600320	TMEM101	Q96IK0	257 aa		13.41	□□□□□ -0.26
SHKBP1-222	ENST00000600320	CDC42SE2	Q9NRR3	84 aa		13.41	□□□□□ -0.26
SHKBP1-222	ENST00000600320	AP5S1	Q9NUS5	200 aa		13.41	□□□□□ -0.26
SHKBP1-222	ENST00000600320	CYSLTR1	Q9Y271	337 aa		13.41	□□□□□ -0.26
SHKBP1-222	ENST00000600320	CSDC2	Q9Y534	153 aa	Known RBP	13.41	□□□□□ -0.26
SHKBP1-222	ENST00000600320		A0A096LNJ9	63 aa		13.4	□□□□□ -0.26
SHKBP1-222	ENST00000600320	HIST1H2BK	O60814	126 aa		13.4	□□□□□ -0.26
SHKBP1-222	ENST00000600320	HIST1H2BJ	P06899	126 aa		13.4	□□□□□ -0.26
SHKBP1-222	ENST00000600320	HIST1H2BO	P23527	126 aa		13.4	□□□□□ -0.26
SHKBP1-222	ENST00000600320	HIST1H2BB	P33778	126 aa		13.4	□□□□□ -0.26
SHKBP1-222	ENST00000600320	HIST1H2BD	P58876	126 aa		13.4	□□□□□ -0.26
SHKBP1-222	ENST00000600320	LINC00310	P59036	64 aa		13.4	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms