RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 GIPP09681 153 aaPredicted RBP5.41□□□□□ -1.54
SHKBP1-220ENST00000599716 SMIM17P0DL12 118 aa5.41□□□□□ -1.54
SHKBP1-220ENST00000599716 PRR3P79522 188 aaKnown RBP5.41□□□□□ -1.54
SHKBP1-220ENST00000599716 FAM213BQ8TBF2 198 aa5.41□□□□□ -1.54
SHKBP1-220ENST00000599716 LINC00526Q96FQ7 95 aa5.41□□□□□ -1.54
SHKBP1-220ENST00000599716 LINC01600Q96MT4 127 aa5.41□□□□□ -1.54
SHKBP1-220ENST00000599716 AP1S3Q96PC3 154 aa5.41□□□□□ -1.54
SHKBP1-220ENST00000599716 TMEM243Q9BU79 118 aa5.41□□□□□ -1.54
SHKBP1-220ENST00000599716 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.4□□□□□ -1.54
SHKBP1-220ENST00000599716 OR5AL1P0C617 328 aa5.4□□□□□ -1.54
SHKBP1-220ENST00000599716 SULT1A2P50226 295 aa5.4□□□□□ -1.54
SHKBP1-220ENST00000599716 PKIAP61925 76 aa5.4□□□□□ -1.54
SHKBP1-220ENST00000599716 TMEM97Q5BJF2 176 aa5.4□□□□□ -1.54
SHKBP1-220ENST00000599716 STPG4Q8N801 248 aa5.4□□□□□ -1.54
SHKBP1-220ENST00000599716 C7orf33Q8WU49 177 aa5.4□□□□□ -1.54
SHKBP1-220ENST00000599716 SFT2D1Q8WV19 159 aa5.4□□□□□ -1.54
SHKBP1-220ENST00000599716 A0A096LNI7 61 aa5.39□□□□□ -1.55
SHKBP1-220ENST00000599716 CXCL1P09341 107 aa5.39□□□□□ -1.55
SHKBP1-220ENST00000599716 RPL35P42766 123 aaKnown RBP5.39□□□□□ -1.55
SHKBP1-220ENST00000599716 TMUB2Q71RG4 321 aa5.39□□□□□ -1.55
SHKBP1-220ENST00000599716 RNF185Q96GF1 192 aa5.39□□□□□ -1.55
SHKBP1-220ENST00000599716 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 TRAV8-4A0A0B4J246 113 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 TRAV26-2A0A0B4J265 109 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 IGKV2-29A2NJV5 120 aaPredicted RBP5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 P01737 135 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 IGLC6P0CF74 106 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 RPS10P46783 165 aaKnown RBP5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 AMTP48728 403 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 CCL20P78556 96 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 WDR73Q6P4I2 378 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 RASL11AQ6T310 242 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 KCNRGQ8N5I3 272 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 FER1L6-AS1Q8NA97 138 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 OR2D3Q8NGH3 330 aa5.38□□□□□ -1.55
SHKBP1-220ENST00000599716 A0A0J9YXV3 536 aa5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 A0A1B0GUV1 79 aa5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 RAB19A4D1S5 217 aa5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 UBE2L6O14933 153 aa5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 PFDN1O60925 122 aa5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 NDUFS6O75380 124 aaKnown RBP5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 KRTAP10-8P60410 259 aa5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 CENPWQ5EE01 88 aa5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 LYZL1Q6UWQ5 148 aa5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 Q6ZNX1 250 aa5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 CHCHD10Q8WYQ3 142 aaPredicted RBP5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 TCEAL7Q9BRU2 100 aa5.37□□□□□ -1.55
SHKBP1-220ENST00000599716 S100A9P06702 114 aaKnown RBP5.36□□□□□ -1.55
SHKBP1-220ENST00000599716 FOXA3P55318 350 aaPredicted RBP5.36□□□□□ -1.55
SHKBP1-220ENST00000599716 COTL1Q14019 142 aa5.36□□□□□ -1.55
SHKBP1-220ENST00000599716 MBD3L1Q8WWY6 194 aa5.36□□□□□ -1.55
SHKBP1-220ENST00000599716 RPL39LQ96EH5 51 aaKnown RBP5.36□□□□□ -1.55
SHKBP1-220ENST00000599716 NIT2Q9NQR4 276 aa5.36□□□□□ -1.55
SHKBP1-220ENST00000599716 GNG13Q9P2W3 67 aa5.36□□□□□ -1.55
SHKBP1-220ENST00000599716 C19orf71A6NCJ1 209 aa5.35□□□□□ -1.55
SHKBP1-220ENST00000599716 H7C1H1 209 aa5.35□□□□□ -1.55
SHKBP1-220ENST00000599716 NTF3P20783 257 aa5.35□□□□□ -1.55
SHKBP1-220ENST00000599716 XCL1P47992 114 aa5.35□□□□□ -1.55
SHKBP1-220ENST00000599716 RNASEKQ6P5S7 137 aaKnown RBP5.35□□□□□ -1.55
SHKBP1-220ENST00000599716 GATD1Q8NB37 220 aa5.35□□□□□ -1.55
SHKBP1-220ENST00000599716 GVQW2A0A096LPI5 108 aaPredicted RBP5.34□□□□□ -1.55
SHKBP1-220ENST00000599716 H2AFB1P0C5Y9 115 aa5.34□□□□□ -1.55
SHKBP1-220ENST00000599716 FOXI1Q12951 378 aa5.34□□□□□ -1.55
SHKBP1-220ENST00000599716 SRSF9Q13242 221 aaKnown RBP eCLIP5.34□□□□□ -1.55
SHKBP1-220ENST00000599716 AMMECR1LQ6DCA0 310 aa5.34□□□□□ -1.55
SHKBP1-220ENST00000599716 PGLYRP4Q96LB8 373 aa5.34□□□□□ -1.55
SHKBP1-220ENST00000599716 KRTAP4-7Q9BYR0 210 aa5.34□□□□□ -1.55
SHKBP1-220ENST00000599716 TRBV20OR9-2A0A075B6H5 130 aa5.33□□□□□ -1.56
SHKBP1-220ENST00000599716 IFNA1P01562 189 aa5.33□□□□□ -1.56
SHKBP1-220ENST00000599716 CACNG7P62955 275 aa5.33□□□□□ -1.56
SHKBP1-220ENST00000599716 TWIST1Q15672 202 aa5.33□□□□□ -1.56
SHKBP1-220ENST00000599716 CFAP161Q6P656 301 aa5.33□□□□□ -1.56
SHKBP1-220ENST00000599716 C11orf52Q96A22 123 aa5.33□□□□□ -1.56
SHKBP1-220ENST00000599716 A0A1W2PNN7 141 aa5.32□□□□□ -1.56
SHKBP1-220ENST00000599716 KRTAP9-7A8MTY7 169 aa5.32□□□□□ -1.56
SHKBP1-220ENST00000599716 CCL25O15444 150 aa5.32□□□□□ -1.56
SHKBP1-220ENST00000599716 TRGC1P0CF51 173 aa5.32□□□□□ -1.56
SHKBP1-220ENST00000599716 FGF6P10767 208 aa5.32□□□□□ -1.56
SHKBP1-220ENST00000599716 GNG4P50150 75 aa5.32□□□□□ -1.56
SHKBP1-220ENST00000599716 RPS20P60866 119 aaKnown RBP5.32□□□□□ -1.56
SHKBP1-220ENST00000599716 GAGE2BQ13066 116 aa5.32□□□□□ -1.56
SHKBP1-220ENST00000599716 REG3GQ6UW15 175 aa5.32□□□□□ -1.56
SHKBP1-220ENST00000599716 SPINK6Q6UWN8 80 aa5.32□□□□□ -1.56
SHKBP1-220ENST00000599716 APCSP02743 223 aa5.31□□□□□ -1.56
SHKBP1-220ENST00000599716 BCL2P10415 239 aa5.31□□□□□ -1.56
SHKBP1-220ENST00000599716 NUDT10Q8NFP7 164 aa5.31□□□□□ -1.56
SHKBP1-220ENST00000599716 NUDT11Q96G61 164 aa5.31□□□□□ -1.56
SHKBP1-220ENST00000599716 CARD19Q96LW7 228 aa5.31□□□□□ -1.56
SHKBP1-220ENST00000599716 RNASE7Q9H1E1 156 aaKnown RBP5.31□□□□□ -1.56
SHKBP1-220ENST00000599716 LINC00959A0A1B0GUT2 108 aa5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 FAM231BA6NCW3 169 aa5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 SDHAF1A6NFY7 115 aa5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 UMAD1C9J7I0 102 aa5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 F2Z2F3 143 aa5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 K7EN84 100 aa5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 BCL2L11O43521 198 aa5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 CTRLP40313 264 aa5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 RNASE13Q5GAN3 156 aaKnown RBP5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 LCE1DQ5T752 114 aa5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 Q6ZRP5 223 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms