RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 NAT8Q9UHE5 227 aa9.77□□□□□ -0.85
SS18-212ENST00000579061 V9GYV3 84 aa9.77□□□□□ -0.85
SS18-212ENST00000579061 TRAV26-2A0A0B4J265 109 aa9.76□□□□□ -0.85
SS18-212ENST00000579061 C9JQL5 133 aa9.76□□□□□ -0.85
SS18-212ENST00000579061 C14orf177Q52M58 125 aa9.76□□□□□ -0.85
SS18-212ENST00000579061 TMEM191AQ9H0A3 160 aa9.76□□□□□ -0.85
SS18-212ENST00000579061 NCR2O95944 276 aa9.75□□□□□ -0.85
SS18-212ENST00000579061 AMTP48728 403 aa9.75□□□□□ -0.85
SS18-212ENST00000579061 LINC00269Q8N2A0 174 aa9.75□□□□□ -0.85
SS18-212ENST00000579061 C20orf203Q8NBC4 194 aa9.75□□□□□ -0.85
SS18-212ENST00000579061 RPL39LQ96EH5 51 aaKnown RBP9.75□□□□□ -0.85
SS18-212ENST00000579061 DNAH8Q96JB1 4490 aa9.75□□□□□ -0.85
SS18-212ENST00000579061 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.74□□□□□ -0.85
SS18-212ENST00000579061 TRBV6-5A0A0K0K1A5 114 aa9.74□□□□□ -0.85
SS18-212ENST00000579061 UBE2L6O14933 153 aa9.74□□□□□ -0.85
SS18-212ENST00000579061 SRSF3P84103 164 aaKnown RBP9.74□□□□□ -0.85
SS18-212ENST00000579061 RIGQ13278 110 aa9.74□□□□□ -0.85
SS18-212ENST00000579061 ADIRFQ15847 76 aa9.74□□□□□ -0.85
SS18-212ENST00000579061 NUP35Q8NFH5 326 aa9.74□□□□□ -0.85
SS18-212ENST00000579061 ABCA13Q86UQ4 5058 aa9.73□□□□□ -0.85
SS18-212ENST00000579061 TRAV8-4A0A0B4J246 113 aa9.73□□□□□ -0.85
SS18-212ENST00000579061 SDHAF1A6NFY7 115 aa9.73□□□□□ -0.85
SS18-212ENST00000579061 REG3AQ06141 175 aa9.73□□□□□ -0.85
SS18-212ENST00000579061 NAT8BQ9UHF3 227 aa9.73□□□□□ -0.85
SS18-212ENST00000579061 IGLV4-60A0A075B6I1 120 aa9.72□□□□□ -0.85
SS18-212ENST00000579061 EPM2AB3EWF7 344 aa9.72□□□□□ -0.85
SS18-212ENST00000579061 H7C423 109 aa9.72□□□□□ -0.85
SS18-212ENST00000579061 RAB4AP20338 218 aa9.72□□□□□ -0.85
SS18-212ENST00000579061 KRTAP26-1Q6PEX3 210 aa9.72□□□□□ -0.85
SS18-212ENST00000579061 CLPSL2Q6UWE3 100 aa9.72□□□□□ -0.85
SS18-212ENST00000579061 MRAP2Q96G30 205 aa9.72□□□□□ -0.85
SS18-212ENST00000579061 RNF185Q96GF1 192 aa9.72□□□□□ -0.85
SS18-212ENST00000579061 SMIM27A0A1W2PRY6 76 aa9.71□□□□□ -0.86
SS18-212ENST00000579061 HLA-DQA1P01909 254 aa9.71□□□□□ -0.86
SS18-212ENST00000579061 APCSP02743 223 aa9.71□□□□□ -0.86
SS18-212ENST00000579061 Q6ZSA8 131 aa9.71□□□□□ -0.86
SS18-212ENST00000579061 DEFB104AQ8WTQ1 72 aa9.71□□□□□ -0.86
SS18-212ENST00000579061 FAM30AQ9NZY2 134 aa9.71□□□□□ -0.86
SS18-212ENST00000579061 USP17L23D6RBM5 183 aa9.7□□□□□ -0.86
SS18-212ENST00000579061 I3L3M4 83 aa9.7□□□□□ -0.86
SS18-212ENST00000579061 PMCHP20382 165 aa9.7□□□□□ -0.86
SS18-212ENST00000579061 ST20Q9HBF5 79 aa9.7□□□□□ -0.86
SS18-212ENST00000579061 VPS13BQ7Z7G8 4022 aa9.7□□□□□ -0.86
SS18-212ENST00000579061 A0A1B0GW15 77 aa9.69□□□□□ -0.86
SS18-212ENST00000579061 PPP1R17O96001 155 aa9.69□□□□□ -0.86
SS18-212ENST00000579061 POLR2KP53803 58 aaKnown RBP9.69□□□□□ -0.86
SS18-212ENST00000579061 AMN1Q8IY45 258 aa9.69□□□□□ -0.86
SS18-212ENST00000579061 GAS8-AS1O95177 125 aa9.68□□□□□ -0.86
SS18-212ENST00000579061 AMMECR1LQ6DCA0 310 aa9.68□□□□□ -0.86
SS18-212ENST00000579061 CLRN3Q8NCR9 226 aa9.68□□□□□ -0.86
SS18-212ENST00000579061 FAT1Q14517 4588 aa9.68□□□□□ -0.86
SS18-212ENST00000579061 IGLV10-54A0A075B6I4 117 aa9.67□□□□□ -0.86
SS18-212ENST00000579061 TRBV27A0A0K0K1C4 114 aa9.67□□□□□ -0.86
SS18-212ENST00000579061 ESDP10768 282 aa9.67□□□□□ -0.86
SS18-212ENST00000579061 ZNF25P17030 456 aaPredicted RBP9.67□□□□□ -0.86
SS18-212ENST00000579061 RPS10P46783 165 aaKnown RBP9.67□□□□□ -0.86
SS18-212ENST00000579061 RAB14P61106 215 aa9.67□□□□□ -0.86
SS18-212ENST00000579061 Q5VSD8 79 aa9.67□□□□□ -0.86
SS18-212ENST00000579061 FAM104BQ5XKR9 115 aa9.67□□□□□ -0.86
SS18-212ENST00000579061 DGAT2L7PQ6IED9 249 aa9.67□□□□□ -0.86
SS18-212ENST00000579061 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.66□□□□□ -0.86
SS18-212ENST00000579061 IGKV2-29A2NJV5 120 aaPredicted RBP9.66□□□□□ -0.86
SS18-212ENST00000579061 PRSS1P07477 247 aa9.66□□□□□ -0.86
SS18-212ENST00000579061 FGF6P10767 208 aa9.66□□□□□ -0.86
SS18-212ENST00000579061 LINC00862A6NCI5 91 aa9.65□□□□□ -0.86
SS18-212ENST00000579061 FAM229AH3BQW9 127 aa9.65□□□□□ -0.86
SS18-212ENST00000579061 TSHBP01222 138 aa9.65□□□□□ -0.86
SS18-212ENST00000579061 SMR3BP02814 79 aaPredicted RBP9.65□□□□□ -0.86
SS18-212ENST00000579061 S100A8P05109 93 aa9.65□□□□□ -0.86
SS18-212ENST00000579061 LINC01620Q4KN68 170 aa9.65□□□□□ -0.86
SS18-212ENST00000579061 RNASEKQ6P5S7 137 aaKnown RBP9.65□□□□□ -0.86
SS18-212ENST00000579061 TMEM242Q9NWH2 141 aa9.65□□□□□ -0.86
SS18-212ENST00000579061 VCYO14598 125 aa9.64□□□□□ -0.87
SS18-212ENST00000579061 PPP1R2P9O14990 202 aa9.64□□□□□ -0.87
SS18-212ENST00000579061 HAMPP81172 84 aa9.64□□□□□ -0.87
SS18-212ENST00000579061 MRPL51Q4U2R6 128 aaKnown RBP9.64□□□□□ -0.87
SS18-212ENST00000579061 NRACQ8N912 160 aa9.64□□□□□ -0.87
SS18-212ENST00000579061 SMKR1H3BMG3 65 aa9.63□□□□□ -0.87
SS18-212ENST00000579061 CAMPP49913 170 aa9.63□□□□□ -0.87
SS18-212ENST00000579061 SUMO2P61956 95 aaKnown RBP9.63□□□□□ -0.87
SS18-212ENST00000579061 PNRC1Q12796 327 aaPredicted RBP9.63□□□□□ -0.87
SS18-212ENST00000579061 C9orf163Q8N9P6 203 aa9.63□□□□□ -0.87
SS18-212ENST00000579061 TMEM101Q96IK0 257 aa9.63□□□□□ -0.87
SS18-212ENST00000579061 BTF3L4Q96K17 158 aa9.63□□□□□ -0.87
SS18-212ENST00000579061 TRBV24-1A0A075B6N3 115 aa9.62□□□□□ -0.87
SS18-212ENST00000579061 A0A1B0GXF2 115 aa9.62□□□□□ -0.87
SS18-212ENST00000579061 C7orf77A4D0Y5 90 aa9.62□□□□□ -0.87
SS18-212ENST00000579061 F8W036 122 aa9.62□□□□□ -0.87
SS18-212ENST00000579061 HBBP68871 147 aa9.62□□□□□ -0.87
SS18-212ENST00000579061 CLLU1Q5K131 121 aa9.62□□□□□ -0.87
SS18-212ENST00000579061 MRPL52Q86TS9 123 aaKnown RBP9.62□□□□□ -0.87
SS18-212ENST00000579061 OR5A1Q8NGJ0 315 aa9.62□□□□□ -0.87
SS18-212ENST00000579061 CNBPP62633 177 aaKnown RBP9.61□□□□□ -0.87
SS18-212ENST00000579061 RPL32P62910 135 aaKnown RBP9.61□□□□□ -0.87
SS18-212ENST00000579061 SMAGPQ0VAQ4 97 aa9.61□□□□□ -0.87
SS18-212ENST00000579061 MRPL54Q6P161 138 aaKnown RBP9.61□□□□□ -0.87
SS18-212ENST00000579061 CFAP161Q6P656 301 aa9.61□□□□□ -0.87
SS18-212ENST00000579061 ATP5L2Q7Z4Y8 100 aa9.61□□□□□ -0.87
SS18-212ENST00000579061 KIR2DL4Q99706 377 aa9.61□□□□□ -0.87
SS18-212ENST00000579061 C20orf78Q9BR46 151 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms