RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 COTL1Q14019 142 aa19.78■□□□□ 0.76
CTDNEP1-206ENST00000571409 C20orf203Q8NBC4 194 aa19.78■□□□□ 0.76
CTDNEP1-206ENST00000571409 AMTP48728 403 aa19.77■□□□□ 0.76
CTDNEP1-206ENST00000571409 FOXA3P55318 350 aaPredicted RBP19.77■□□□□ 0.76
CTDNEP1-206ENST00000571409 KRTAP26-1Q6PEX3 210 aa19.77■□□□□ 0.76
CTDNEP1-206ENST00000571409 IGLV4-60A0A075B6I1 120 aa19.76■□□□□ 0.75
CTDNEP1-206ENST00000571409 A0A1B0GUV1 79 aa19.76■□□□□ 0.75
CTDNEP1-206ENST00000571409 NDUFS6O75380 124 aaKnown RBP19.76■□□□□ 0.75
CTDNEP1-206ENST00000571409 CT83Q5H943 113 aa19.76■□□□□ 0.75
CTDNEP1-206ENST00000571409 UBE2L6O14933 153 aa19.75■□□□□ 0.75
CTDNEP1-206ENST00000571409 LINC01551Q86U37 167 aa19.75■□□□□ 0.75
CTDNEP1-206ENST00000571409 RPL39LQ96EH5 51 aaKnown RBP19.75■□□□□ 0.75
CTDNEP1-206ENST00000571409 IGLV10-54A0A075B6I4 117 aa19.74■□□□□ 0.75
CTDNEP1-206ENST00000571409 SCXQ7RTU7 201 aa19.74■□□□□ 0.75
CTDNEP1-206ENST00000571409 ZNF727A8MUV8 499 aa19.73■□□□□ 0.75
CTDNEP1-206ENST00000571409 SRP19P09132 144 aaKnown RBP19.73■□□□□ 0.75
CTDNEP1-206ENST00000571409 GFRA4Q9GZZ7 299 aa19.73■□□□□ 0.75
CTDNEP1-206ENST00000571409 PRSS1P07477 247 aa19.72■□□□□ 0.75
CTDNEP1-206ENST00000571409 TEX261Q6UWH6 196 aa19.71■□□□□ 0.75
CTDNEP1-206ENST00000571409 LINC00528Q8N1L1 170 aa19.71■□□□□ 0.75
CTDNEP1-206ENST00000571409 BORCS7Q96B45 105 aa19.71■□□□□ 0.75
CTDNEP1-206ENST00000571409 SRRM2Q9UQ35 2752 aaKnown RBP19.7■□□□□ 0.74
CTDNEP1-206ENST00000571409 TRAV8-4A0A0B4J246 113 aa19.7■□□□□ 0.74
CTDNEP1-206ENST00000571409 CHAC1Q9BUX1 264 aa19.7■□□□□ 0.74
CTDNEP1-206ENST00000571409 TSKUQ8WUA8 353 aa19.69■□□□□ 0.74
CTDNEP1-206ENST00000571409 OSTCQ9NRP0 149 aa19.68■□□□□ 0.74
CTDNEP1-206ENST00000571409 HIGD1CA8MV81 97 aa19.67■□□□□ 0.74
CTDNEP1-206ENST00000571409 PLA2G1BP04054 148 aaKnown RBP19.67■□□□□ 0.74
CTDNEP1-206ENST00000571409 A0A1B0GUT8 65 aa19.66■□□□□ 0.74
CTDNEP1-206ENST00000571409 SDHAF1A6NFY7 115 aa19.66■□□□□ 0.74
CTDNEP1-206ENST00000571409 DGAT2L7PQ6IED9 249 aa19.66■□□□□ 0.74
CTDNEP1-206ENST00000571409 NCR2O95944 276 aa19.65■□□□□ 0.74
CTDNEP1-206ENST00000571409 CIRBP-AS1Q8TBR5 109 aa19.64■□□□□ 0.73
CTDNEP1-206ENST00000571409 FAM231BA6NCW3 169 aa19.63■□□□□ 0.73
CTDNEP1-206ENST00000571409 APCSP02743 223 aa19.63■□□□□ 0.73
CTDNEP1-206ENST00000571409 CLRN3Q8NCR9 226 aa19.63■□□□□ 0.73
CTDNEP1-206ENST00000571409 TMEM191AQ9H0A3 160 aa19.62■□□□□ 0.73
CTDNEP1-206ENST00000571409 V9GYV3 84 aa19.62■□□□□ 0.73
CTDNEP1-206ENST00000571409 IGKV2D-29A0A075B6S2 120 aaPredicted RBP19.61■□□□□ 0.73
CTDNEP1-206ENST00000571409 TRBV6-5A0A0K0K1A5 114 aa19.61■□□□□ 0.73
CTDNEP1-206ENST00000571409 IGKV2-29A2NJV5 120 aaPredicted RBP19.61■□□□□ 0.73
CTDNEP1-206ENST00000571409 GAS8-AS1O95177 125 aa19.61■□□□□ 0.73
CTDNEP1-206ENST00000571409 AMMECR1LQ6DCA0 310 aa19.61■□□□□ 0.73
CTDNEP1-206ENST00000571409 C9orf163Q8N9P6 203 aa19.61■□□□□ 0.73
CTDNEP1-206ENST00000571409 PMCHP20382 165 aa19.6■□□□□ 0.73
CTDNEP1-206ENST00000571409 TMEM241Q24JQ0 296 aa19.6■□□□□ 0.73
CTDNEP1-206ENST00000571409 ISOC2Q96AB3 205 aa19.6■□□□□ 0.73
CTDNEP1-206ENST00000571409 IGKV3OR2-268A0A0C4DH90 116 aa19.59■□□□□ 0.73
CTDNEP1-206ENST00000571409 H7C423 109 aa19.59■□□□□ 0.73
CTDNEP1-206ENST00000571409 I3L3M4 83 aa19.59■□□□□ 0.73
CTDNEP1-206ENST00000571409 FAM74A3Q4VXF1 159 aa19.59■□□□□ 0.73
CTDNEP1-206ENST00000571409 RNASEKQ6P5S7 137 aaKnown RBP19.59■□□□□ 0.73
CTDNEP1-206ENST00000571409 hDV102S1A0JD36 115 aa19.58■□□□□ 0.72
CTDNEP1-206ENST00000571409 RPL23P62829 140 aaKnown RBP19.58■□□□□ 0.72
CTDNEP1-206ENST00000571409 RNF185Q96GF1 192 aa19.58■□□□□ 0.72
CTDNEP1-206ENST00000571409 MYCBP2O75592 4640 aa19.57■□□□□ 0.72
CTDNEP1-206ENST00000571409 ST20Q9HBF5 79 aa19.57■□□□□ 0.72
CTDNEP1-206ENST00000571409 FLG2Q5D862 2391 aaPredicted RBP19.56■□□□□ 0.72
CTDNEP1-206ENST00000571409 C9JQL5 133 aa19.56■□□□□ 0.72
CTDNEP1-206ENST00000571409 FGF6P10767 208 aa19.56■□□□□ 0.72
CTDNEP1-206ENST00000571409 RAB4AP20338 218 aa19.56■□□□□ 0.72
CTDNEP1-206ENST00000571409 AMN1Q8IY45 258 aa19.56■□□□□ 0.72
CTDNEP1-206ENST00000571409 NUP35Q8NFH5 326 aa19.56■□□□□ 0.72
CTDNEP1-206ENST00000571409 RIGQ13278 110 aa19.55■□□□□ 0.72
CTDNEP1-206ENST00000571409 ADIRFQ15847 76 aa19.55■□□□□ 0.72
CTDNEP1-206ENST00000571409 GAGE12HA6NDE8 117 aa19.54■□□□□ 0.72
CTDNEP1-206ENST00000571409 CNBPP62633 177 aaKnown RBP19.54■□□□□ 0.72
CTDNEP1-206ENST00000571409 SRSF3P84103 164 aaKnown RBP19.54■□□□□ 0.72
CTDNEP1-206ENST00000571409 MRAP2Q96G30 205 aa19.54■□□□□ 0.72
CTDNEP1-206ENST00000571409 NAT8Q9UHE5 227 aa19.54■□□□□ 0.72
CTDNEP1-206ENST00000571409 TSHBP01222 138 aa19.53■□□□□ 0.72
CTDNEP1-206ENST00000571409 RPS10P46783 165 aaKnown RBP19.53■□□□□ 0.72
CTDNEP1-206ENST00000571409 AP5S1Q9NUS5 200 aa19.53■□□□□ 0.72
CTDNEP1-206ENST00000571409 TMEM242Q9NWH2 141 aa19.53■□□□□ 0.72
CTDNEP1-206ENST00000571409 PEA15Q15121 130 aa19.52■□□□□ 0.72
CTDNEP1-206ENST00000571409 NAT8BQ9UHF3 227 aa19.52■□□□□ 0.72
CTDNEP1-206ENST00000571409 ZNF25P17030 456 aaPredicted RBP19.51■□□□□ 0.71
CTDNEP1-206ENST00000571409 SDIM1Q6ZPB5 146 aa19.51■□□□□ 0.71
CTDNEP1-206ENST00000571409 ESDP10768 282 aa19.5■□□□□ 0.71
CTDNEP1-206ENST00000571409 POLR2KP53803 58 aaKnown RBP19.5■□□□□ 0.71
CTDNEP1-206ENST00000571409 BTF3L4Q96K17 158 aa19.5■□□□□ 0.71
CTDNEP1-206ENST00000571409 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP19.5■□□□□ 0.71
CTDNEP1-206ENST00000571409 SMKR1H3BMG3 65 aa19.49■□□□□ 0.71
CTDNEP1-206ENST00000571409 CHCHD10Q8WYQ3 142 aaPredicted RBP19.49■□□□□ 0.71
CTDNEP1-206ENST00000571409 HERC1Q15751 4861 aa19.49■□□□□ 0.71
CTDNEP1-206ENST00000571409 DMBT1Q9UGM3 2413 aaPredicted RBP19.49■□□□□ 0.71
CTDNEP1-206ENST00000571409 TRBV27A0A0K0K1C4 114 aa19.48■□□□□ 0.71
CTDNEP1-206ENST00000571409 SLPIP03973 132 aa19.48■□□□□ 0.71
CTDNEP1-206ENST00000571409 C15orf56Q8N910 161 aa19.48■□□□□ 0.71
CTDNEP1-206ENST00000571409 TMEM101Q96IK0 257 aa19.48■□□□□ 0.71
CTDNEP1-206ENST00000571409 TRAV16A0A0A6YYK6 109 aaPredicted RBP19.47■□□□□ 0.71
CTDNEP1-206ENST00000571409 PANO1I0J062 215 aa19.47■□□□□ 0.71
CTDNEP1-206ENST00000571409 KRTAP10-4P60372 401 aaPredicted RBP19.47■□□□□ 0.71
CTDNEP1-206ENST00000571409 CFAP161Q6P656 301 aa19.47■□□□□ 0.71
CTDNEP1-206ENST00000571409 SMDT1Q9H4I9 107 aa19.47■□□□□ 0.71
CTDNEP1-206ENST00000571409 OR5A1Q8NGJ0 315 aa19.46■□□□□ 0.71
CTDNEP1-206ENST00000571409 IGHV3-64A0A075B6Q5 118 aa19.45■□□□□ 0.7
CTDNEP1-206ENST00000571409 SMIM27A0A1W2PRY6 76 aa19.45■□□□□ 0.7
CTDNEP1-206ENST00000571409 NRACQ8N912 160 aa19.43■□□□□ 0.7
CTDNEP1-206ENST00000571409 C7orf77A4D0Y5 90 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms