RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 PRR34Q9NV39 138 aa11.04□□□□□ -0.64
CLK3-210ENST00000563112 COTL1Q14019 142 aa11.03□□□□□ -0.64
CLK3-210ENST00000563112 LINC01620Q4KN68 170 aa11.03□□□□□ -0.64
CLK3-210ENST00000563112 CLPSL2Q6UWE3 100 aa11.03□□□□□ -0.64
CLK3-210ENST00000563112 Q6ZSA8 131 aa11.03□□□□□ -0.64
CLK3-210ENST00000563112 FAM231DQ6ZW35 169 aa11.03□□□□□ -0.64
CLK3-210ENST00000563112 UBE2L6O14933 153 aa11.02□□□□□ -0.65
CLK3-210ENST00000563112 GTSF1Q8WW33 167 aa11.02□□□□□ -0.65
CLK3-210ENST00000563112 A0A1B0GUV1 79 aa11.01□□□□□ -0.65
CLK3-210ENST00000563112 USP17L23D6RBM5 183 aa11.01□□□□□ -0.65
CLK3-210ENST00000563112 NDUFS6O75380 124 aaKnown RBP11.01□□□□□ -0.65
CLK3-210ENST00000563112 AMTP48728 403 aa11.01□□□□□ -0.65
CLK3-210ENST00000563112 REG3AQ06141 175 aa11.01□□□□□ -0.65
CLK3-210ENST00000563112 BORCS7Q96B45 105 aa11.01□□□□□ -0.65
CLK3-210ENST00000563112 SMIM7Q9BQ49 75 aa11.01□□□□□ -0.65
CLK3-210ENST00000563112 CT83Q5H943 113 aa11□□□□□ -0.65
CLK3-210ENST00000563112 GATD1Q8NB37 220 aa11□□□□□ -0.65
CLK3-210ENST00000563112 DMBT1Q9UGM3 2413 aaPredicted RBP11□□□□□ -0.65
CLK3-210ENST00000563112 TRAV8-4A0A0B4J246 113 aa10.99□□□□□ -0.65
CLK3-210ENST00000563112 PLA2G1BP04054 148 aaKnown RBP10.99□□□□□ -0.65
CLK3-210ENST00000563112 C20orf203Q8NBC4 194 aa10.99□□□□□ -0.65
CLK3-210ENST00000563112 DEFB104AQ8WTQ1 72 aa10.99□□□□□ -0.65
CLK3-210ENST00000563112 TRAV26-2A0A0B4J265 109 aa10.98□□□□□ -0.65
CLK3-210ENST00000563112 ZNF727A8MUV8 499 aa10.98□□□□□ -0.65
CLK3-210ENST00000563112 IGLV10-54A0A075B6I4 117 aa10.97□□□□□ -0.65
CLK3-210ENST00000563112 FOXA3P55318 350 aaPredicted RBP10.97□□□□□ -0.65
CLK3-210ENST00000563112 DGAT2L7PQ6IED9 249 aa10.97□□□□□ -0.65
CLK3-210ENST00000563112 CHAC1Q9BUX1 264 aa10.97□□□□□ -0.65
CLK3-210ENST00000563112 FLG2Q5D862 2391 aaPredicted RBP10.97□□□□□ -0.65
CLK3-210ENST00000563112 IGLV4-60A0A075B6I1 120 aa10.96□□□□□ -0.65
CLK3-210ENST00000563112 NCR2O95944 276 aa10.96□□□□□ -0.65
CLK3-210ENST00000563112 PRSS1P07477 247 aa10.96□□□□□ -0.65
CLK3-210ENST00000563112 SRP19P09132 144 aaKnown RBP10.96□□□□□ -0.65
CLK3-210ENST00000563112 KRTAP26-1Q6PEX3 210 aa10.96□□□□□ -0.65
CLK3-210ENST00000563112 SCXQ7RTU7 201 aa10.96□□□□□ -0.65
CLK3-210ENST00000563112 LINC01551Q86U37 167 aa10.96□□□□□ -0.65
CLK3-210ENST00000563112 LINC00528Q8N1L1 170 aa10.96□□□□□ -0.65
CLK3-210ENST00000563112 CLRN3Q8NCR9 226 aa10.96□□□□□ -0.65
CLK3-210ENST00000563112 RPL39LQ96EH5 51 aaKnown RBP10.96□□□□□ -0.65
CLK3-210ENST00000563112 AMMECR1LQ6DCA0 310 aa10.95□□□□□ -0.66
CLK3-210ENST00000563112 TSKUQ8WUA8 353 aa10.95□□□□□ -0.66
CLK3-210ENST00000563112 GFRA4Q9GZZ7 299 aa10.95□□□□□ -0.66
CLK3-210ENST00000563112 OSTCQ9NRP0 149 aa10.95□□□□□ -0.66
CLK3-210ENST00000563112 A0A1B0GUT8 65 aa10.94□□□□□ -0.66
CLK3-210ENST00000563112 FAM231BA6NCW3 169 aa10.94□□□□□ -0.66
CLK3-210ENST00000563112 SDHAF1A6NFY7 115 aa10.94□□□□□ -0.66
CLK3-210ENST00000563112 HIGD1CA8MV81 97 aa10.94□□□□□ -0.66
CLK3-210ENST00000563112 APCSP02743 223 aa10.94□□□□□ -0.66
CLK3-210ENST00000563112 PMCHP20382 165 aa10.93□□□□□ -0.66
CLK3-210ENST00000563112 FAM74A3Q4VXF1 159 aa10.93□□□□□ -0.66
CLK3-210ENST00000563112 H7C423 109 aa10.92□□□□□ -0.66
CLK3-210ENST00000563112 TMEM241Q24JQ0 296 aa10.92□□□□□ -0.66
CLK3-210ENST00000563112 RNASEKQ6P5S7 137 aaKnown RBP10.92□□□□□ -0.66
CLK3-210ENST00000563112 C9orf163Q8N9P6 203 aa10.92□□□□□ -0.66
CLK3-210ENST00000563112 CIRBP-AS1Q8TBR5 109 aa10.92□□□□□ -0.66
CLK3-210ENST00000563112 TMEM191AQ9H0A3 160 aa10.92□□□□□ -0.66
CLK3-210ENST00000563112 TRBV6-5A0A0K0K1A5 114 aa10.91□□□□□ -0.66
CLK3-210ENST00000563112 hDV102S1A0JD36 115 aa10.91□□□□□ -0.66
CLK3-210ENST00000563112 I3L3M4 83 aa10.91□□□□□ -0.66
CLK3-210ENST00000563112 SMDT1Q9H4I9 107 aa10.91□□□□□ -0.66
CLK3-210ENST00000563112 ST20Q9HBF5 79 aa10.91□□□□□ -0.66
CLK3-210ENST00000563112 AP5S1Q9NUS5 200 aa10.91□□□□□ -0.66
CLK3-210ENST00000563112 MYCBP2O75592 4640 aa10.91□□□□□ -0.66
CLK3-210ENST00000563112 IGKV3OR2-268A0A0C4DH90 116 aa10.9□□□□□ -0.66
CLK3-210ENST00000563112 RIGQ13278 110 aa10.9□□□□□ -0.66
CLK3-210ENST00000563112 SVBPQ8N300 66 aa10.9□□□□□ -0.66
CLK3-210ENST00000563112 HERC1Q15751 4861 aa10.9□□□□□ -0.66
CLK3-210ENST00000563112 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.89□□□□□ -0.67
CLK3-210ENST00000563112 IGKV2-29A2NJV5 120 aaPredicted RBP10.89□□□□□ -0.67
CLK3-210ENST00000563112 PEA15Q15121 130 aa10.89□□□□□ -0.67
CLK3-210ENST00000563112 CFAP161Q6P656 301 aa10.89□□□□□ -0.67
CLK3-210ENST00000563112 MRAP2Q96G30 205 aa10.89□□□□□ -0.67
CLK3-210ENST00000563112 BTF3L4Q96K17 158 aa10.89□□□□□ -0.67
CLK3-210ENST00000563112 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.88□□□□□ -0.67
CLK3-210ENST00000563112 GAGE12HA6NDE8 117 aa10.88□□□□□ -0.67
CLK3-210ENST00000563112 FGF6P10767 208 aa10.88□□□□□ -0.67
CLK3-210ENST00000563112 RAB4AP20338 218 aa10.88□□□□□ -0.67
CLK3-210ENST00000563112 ISOC2Q96AB3 205 aa10.88□□□□□ -0.67
CLK3-210ENST00000563112 TMEM101Q96IK0 257 aa10.88□□□□□ -0.67
CLK3-210ENST00000563112 V9GYV3 84 aa10.88□□□□□ -0.67
CLK3-210ENST00000563112 ZNF25P17030 456 aaPredicted RBP10.87□□□□□ -0.67
CLK3-210ENST00000563112 CNBPP62633 177 aaKnown RBP10.87□□□□□ -0.67
CLK3-210ENST00000563112 RPL23P62829 140 aaKnown RBP10.87□□□□□ -0.67
CLK3-210ENST00000563112 ADIRFQ15847 76 aa10.87□□□□□ -0.67
CLK3-210ENST00000563112 NUP35Q8NFH5 326 aa10.87□□□□□ -0.67
CLK3-210ENST00000563112 NAT8Q9UHE5 227 aa10.87□□□□□ -0.67
CLK3-210ENST00000563112 NAT8BQ9UHF3 227 aa10.87□□□□□ -0.67
CLK3-210ENST00000563112 TMEM218A2RU14 115 aa10.86□□□□□ -0.67
CLK3-210ENST00000563112 SNAPINO95295 136 aa10.86□□□□□ -0.67
CLK3-210ENST00000563112 PPP1R17O96001 155 aa10.86□□□□□ -0.67
CLK3-210ENST00000563112 APOC3P02656 99 aa10.86□□□□□ -0.67
CLK3-210ENST00000563112 AMN1Q8IY45 258 aa10.86□□□□□ -0.67
CLK3-210ENST00000563112 RNF185Q96GF1 192 aa10.86□□□□□ -0.67
CLK3-210ENST00000563112 SEC11CQ9BY50 192 aa10.86□□□□□ -0.67
CLK3-210ENST00000563112 F8W036 122 aa10.85□□□□□ -0.67
CLK3-210ENST00000563112 GAS8-AS1O95177 125 aa10.85□□□□□ -0.67
CLK3-210ENST00000563112 SDIM1Q6ZPB5 146 aa10.85□□□□□ -0.67
CLK3-210ENST00000563112 CHCHD10Q8WYQ3 142 aaPredicted RBP10.85□□□□□ -0.67
CLK3-210ENST00000563112 TMEM242Q9NWH2 141 aa10.85□□□□□ -0.67
CLK3-210ENST00000563112 IGHV3-64A0A075B6Q5 118 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms