RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ORMDL2Q53FV1 153 aa8.26□□□□□ -1.09
LDLR-212ENST00000560467 TMEM97Q5BJF2 176 aa8.26□□□□□ -1.09
LDLR-212ENST00000560467 DAZ4Q86SG3 579 aaKnown RBP8.26□□□□□ -1.09
LDLR-212ENST00000560467 NIT1Q86X76 327 aa8.26□□□□□ -1.09
LDLR-212ENST00000560467 NRACQ8N912 160 aa8.26□□□□□ -1.09
LDLR-212ENST00000560467 ZNRF2Q8NHG8 242 aa8.26□□□□□ -1.09
LDLR-212ENST00000560467 RPL39LQ96EH5 51 aaKnown RBP8.26□□□□□ -1.09
LDLR-212ENST00000560467 SMIM2Q9BVW6 85 aa8.26□□□□□ -1.09
LDLR-212ENST00000560467 DAZ3Q9NR90 486 aaKnown RBP8.26□□□□□ -1.09
LDLR-212ENST00000560467 DEFB131BA0A096LNP1 70 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 GAGE12JA6NER3 117 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 PRSS29PA6NIE9 313 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 LINC01549A6NIU2 74 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 PRSS47A8MTI9 375 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 M0R2N4 97 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 CRYBA4P53673 196 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 SMAGPQ0VAQ4 97 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 GAGE1Q13065 139 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 GAGE4Q13068 117 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 GAGE5Q13069 117 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 MRPL23Q16540 153 aaKnown RBP8.25□□□□□ -1.09
LDLR-212ENST00000560467 GAGE13Q4V321 117 aa8.25□□□□□ -1.09
LDLR-212ENST00000560467 MUC4Q99102 2169 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 NUDT3O95989 172 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 GYPEP15421 78 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 S100A12P80511 92 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 COTL1Q14019 142 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 LAGE3Q14657 143 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 IQCJQ1A5X6 159 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 Q6ZSN1 163 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 TMEM18Q96B42 140 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 TMEM70Q9BUB7 260 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 KRTAP4-5Q9BYR2 181 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 ICOSQ9Y6W8 199 aa8.24□□□□□ -1.09
LDLR-212ENST00000560467 TRAV26-1A0A087WT03 109 aa8.23□□□□□ -1.09
LDLR-212ENST00000560467 TRBV27A0A0K0K1C4 114 aa8.23□□□□□ -1.09
LDLR-212ENST00000560467 H3BNG1 76 aa8.23□□□□□ -1.09
LDLR-212ENST00000560467 SERF1AO75920 110 aa8.23□□□□□ -1.09
LDLR-212ENST00000560467 GAS8-AS1O95177 125 aa8.23□□□□□ -1.09
LDLR-212ENST00000560467 HOXA5P20719 270 aa8.23□□□□□ -1.09
LDLR-212ENST00000560467 SNRPEP62304 92 aaKnown RBP8.23□□□□□ -1.09
LDLR-212ENST00000560467 COA6Q5JTJ3 125 aaKnown RBP8.23□□□□□ -1.09
LDLR-212ENST00000560467 NEXN-AS1Q8NBZ9 246 aa8.23□□□□□ -1.09
LDLR-212ENST00000560467 PKD1P98161 4303 aa8.22□□□□□ -1.09
LDLR-212ENST00000560467 A0A0J9YY99 117 aa8.22□□□□□ -1.09
LDLR-212ENST00000560467 P0DMU3 169 aa8.22□□□□□ -1.09
LDLR-212ENST00000560467 FAM231AP0DMU4 169 aa8.22□□□□□ -1.09
LDLR-212ENST00000560467 FAM231CP0DMU5 169 aa8.22□□□□□ -1.09
LDLR-212ENST00000560467 POLR2KP53803 58 aaKnown RBP8.22□□□□□ -1.09
LDLR-212ENST00000560467 LINC00518Q8N0U6 118 aa8.22□□□□□ -1.09
LDLR-212ENST00000560467 ATP6V0E2Q8NHE4 81 aa8.22□□□□□ -1.09
LDLR-212ENST00000560467 AMTP48728 403 aa8.21□□□□□ -1.1
LDLR-212ENST00000560467 UBE2D3P61077 147 aa8.21□□□□□ -1.1
LDLR-212ENST00000560467 UBE2D2P62837 147 aa8.21□□□□□ -1.1
LDLR-212ENST00000560467 HSPG2P98160 4391 aa8.21□□□□□ -1.1
LDLR-212ENST00000560467 IGLV2-18A0A075B6J9 118 aa8.2□□□□□ -1.1
LDLR-212ENST00000560467 SMIM6P0DI80 62 aa8.2□□□□□ -1.1
LDLR-212ENST00000560467 BTF3P20290 206 aaKnown RBP8.2□□□□□ -1.1
LDLR-212ENST00000560467 NEGR1Q7Z3B1 354 aa8.2□□□□□ -1.1
LDLR-212ENST00000560467 HSPB8Q9UJY1 196 aa8.2□□□□□ -1.1
LDLR-212ENST00000560467 TRBV25-1A0A075B6N4 114 aa8.19□□□□□ -1.1
LDLR-212ENST00000560467 C5orf52A6NGY3 159 aa8.19□□□□□ -1.1
LDLR-212ENST00000560467 UBE2L6O14933 153 aa8.19□□□□□ -1.1
LDLR-212ENST00000560467 HBDP02042 147 aa8.19□□□□□ -1.1
LDLR-212ENST00000560467 ESDP10768 282 aa8.19□□□□□ -1.1
LDLR-212ENST00000560467 PDZD11Q5EBL8 140 aa8.19□□□□□ -1.1
LDLR-212ENST00000560467 C15orf53Q8NAA6 179 aa8.19□□□□□ -1.1
LDLR-212ENST00000560467 GTSF1LQ9H1H1 148 aa8.19□□□□□ -1.1
LDLR-212ENST00000560467 CYSLTR1Q9Y271 337 aa8.19□□□□□ -1.1
LDLR-212ENST00000560467 IGHV1-24A0A0C4DH33 117 aa8.18□□□□□ -1.1
LDLR-212ENST00000560467 IGHV3-38A0A0C4DH36 116 aa8.18□□□□□ -1.1
LDLR-212ENST00000560467 LINC01546A6NGU7 62 aa8.18□□□□□ -1.1
LDLR-212ENST00000560467 PKIAP61925 76 aa8.18□□□□□ -1.1
LDLR-212ENST00000560467 PAPPA-AS1Q5QFB9 102 aa8.18□□□□□ -1.1
LDLR-212ENST00000560467 DGAT2L7PQ6IED9 249 aa8.18□□□□□ -1.1
LDLR-212ENST00000560467 PACRGQ96M98 296 aaPredicted RBP8.18□□□□□ -1.1
LDLR-212ENST00000560467 LOC100131303A0A0U1RQF7 123 aa8.17□□□□□ -1.1
LDLR-212ENST00000560467 ATP5LO75964 103 aa8.17□□□□□ -1.1
LDLR-212ENST00000560467 LEPROTL1O95214 131 aa8.17□□□□□ -1.1
LDLR-212ENST00000560467 AMMECR1LQ6DCA0 310 aa8.17□□□□□ -1.1
LDLR-212ENST00000560467 Q6ZR54 194 aa8.17□□□□□ -1.1
LDLR-212ENST00000560467 UBE2DNLQ8IWF7 75 aa8.17□□□□□ -1.1
LDLR-212ENST00000560467 VSIG2Q96IQ7 327 aa8.17□□□□□ -1.1
LDLR-212ENST00000560467 SCGB3A1Q96QR1 104 aa8.17□□□□□ -1.1
LDLR-212ENST00000560467 TMEM243Q9BU79 118 aa8.17□□□□□ -1.1
LDLR-212ENST00000560467 TRAV8-6A0A0B4J262 113 aa8.16□□□□□ -1.1
LDLR-212ENST00000560467 TSHBP01222 138 aa8.16□□□□□ -1.1
LDLR-212ENST00000560467 FABP4P15090 132 aa8.16□□□□□ -1.1
LDLR-212ENST00000560467 AKR1D1P51857 326 aa8.16□□□□□ -1.1
LDLR-212ENST00000560467 HIST3H2BBQ8N257 126 aa8.16□□□□□ -1.1
LDLR-212ENST00000560467 FAM19A2Q8N3H0 131 aa8.16□□□□□ -1.1
LDLR-212ENST00000560467 TMEM101Q96IK0 257 aa8.16□□□□□ -1.1
LDLR-212ENST00000560467 MAP1LC3CQ9BXW4 147 aa8.16□□□□□ -1.1
LDLR-212ENST00000560467 LRP1BQ9NZR2 4599 aa8.16□□□□□ -1.1
LDLR-212ENST00000560467 A0A096LPF7 62 aa8.15□□□□□ -1.1
LDLR-212ENST00000560467 TRBV6-8A0A0A6YYG3 113 aa8.15□□□□□ -1.1
LDLR-212ENST00000560467 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.15□□□□□ -1.1
LDLR-212ENST00000560467 H7C423 109 aa8.15□□□□□ -1.1
LDLR-212ENST00000560467 PMCHL1Q16048 86 aa8.15□□□□□ -1.1
LDLR-212ENST00000560467 C2orf66Q6UXQ4 117 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms