RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 GAS8-AS1O95177 125 aa8.02□□□□□ -1.13
USP3-218ENST00000560202 Q8NAQ8 132 aa8.02□□□□□ -1.13
USP3-218ENST00000560202 H3BUT2 72 aa8.02□□□□□ -1.13
USP3-218ENST00000560202 GAGE7O76087 117 aa8.02□□□□□ -1.13
USP3-218ENST00000560202 GAGE12FP0CL80 117 aa8.02□□□□□ -1.13
USP3-218ENST00000560202 GAGE12GP0CL81 117 aa8.02□□□□□ -1.13
USP3-218ENST00000560202 GAGE12IP0CL82 117 aa8.02□□□□□ -1.13
USP3-218ENST00000560202 GATA1P15976 413 aaPredicted RBP8.02□□□□□ -1.13
USP3-218ENST00000560202 SBSPONQ8IVN8 264 aa8.02□□□□□ -1.13
USP3-218ENST00000560202 RETNQ9HD89 108 aa8.02□□□□□ -1.13
USP3-218ENST00000560202 IGHV3-73A0A0B4J1V6 119 aa8.01□□□□□ -1.13
USP3-218ENST00000560202 F8W1H4 67 aa8.01□□□□□ -1.13
USP3-218ENST00000560202 DEFB4AO15263 64 aa8.01□□□□□ -1.13
USP3-218ENST00000560202 NPYP01303 97 aa8.01□□□□□ -1.13
USP3-218ENST00000560202 SMIM13P0DJ93 91 aa8.01□□□□□ -1.13
USP3-218ENST00000560202 ZNF56Q15929 161 aa8.01□□□□□ -1.13
USP3-218ENST00000560202 SUMO4Q6EEV6 95 aa8.01□□□□□ -1.13
USP3-218ENST00000560202 ERASQ7Z444 233 aa8.01□□□□□ -1.13
USP3-218ENST00000560202 TRGV2A0A075B6R0 118 aa8□□□□□ -1.13
USP3-218ENST00000560202 TRAV4A0A0B4J268 109 aa8□□□□□ -1.13
USP3-218ENST00000560202 RHODO00212 210 aa8□□□□□ -1.13
USP3-218ENST00000560202 TNFRSF6BO95407 300 aa8□□□□□ -1.13
USP3-218ENST00000560202 ZFP2Q6ZN57 461 aa8□□□□□ -1.13
USP3-218ENST00000560202 LINC00173Q6ZV60 143 aa8□□□□□ -1.13
USP3-218ENST00000560202 LINC00612Q8N6U2 182 aa8□□□□□ -1.13
USP3-218ENST00000560202 NRACQ8N912 160 aa8□□□□□ -1.13
USP3-218ENST00000560202 LYRM9A8MSI8 78 aa7.99□□□□□ -1.13
USP3-218ENST00000560202 FAM222AQ5U5X8 452 aa7.99□□□□□ -1.13
USP3-218ENST00000560202 PRSS3P2Q8NHM4 247 aa7.99□□□□□ -1.13
USP3-218ENST00000560202 ZNF479Q96JC4 524 aa7.99□□□□□ -1.13
USP3-218ENST00000560202 SPATA25Q9BR10 227 aa7.99□□□□□ -1.13
USP3-218ENST00000560202 DKK2Q9UBU2 259 aa7.99□□□□□ -1.13
USP3-218ENST00000560202 M0QY20 66 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 IGHV3-53P01767 116 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 DEFB130BP0DP73 79 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 DEFB130AP0DP74 79 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 MRAPQ8TCY5 172 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 RPL39LQ96EH5 51 aaKnown RBP7.98□□□□□ -1.13
USP3-218ENST00000560202 LOC389332A0A1B0GUA5 103 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 PPP1R17O96001 155 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 TAL2Q16559 108 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 Q6ZSN1 163 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 C18orf15Q96N68 181 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 TM2D3Q9BRN9 247 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 MAP1LC3AQ9H492 121 aa7.98□□□□□ -1.13
USP3-218ENST00000560202 H7C1H1 209 aa7.97□□□□□ -1.13
USP3-218ENST00000560202 C20orf78Q9BR46 151 aa7.97□□□□□ -1.13
USP3-218ENST00000560202 EDA2RQ9HAV5 297 aa7.97□□□□□ -1.13
USP3-218ENST00000560202 GAGE12HA6NDE8 117 aa7.96□□□□□ -1.13
USP3-218ENST00000560202 PRSS47A8MTI9 375 aa7.96□□□□□ -1.13
USP3-218ENST00000560202 HBDP02042 147 aa7.96□□□□□ -1.13
USP3-218ENST00000560202 SPART-AS1P0CW21 52 aa7.96□□□□□ -1.13
USP3-218ENST00000560202 IFI27P40305 119 aaPredicted RBP7.96□□□□□ -1.13
USP3-218ENST00000560202 CELA1Q9UNI1 258 aa7.96□□□□□ -1.13
USP3-218ENST00000560202 TRBV6-5A0A0K0K1A5 114 aa7.95□□□□□ -1.14
USP3-218ENST00000560202 SUMO2P61956 95 aaKnown RBP7.95□□□□□ -1.14
USP3-218ENST00000560202 RPL24P83731 157 aaKnown RBP7.95□□□□□ -1.14
USP3-218ENST00000560202 C11orf68Q9H3H3 251 aaKnown RBP7.95□□□□□ -1.14
USP3-218ENST00000560202 TP73-AS1Q9UF72 201 aa7.95□□□□□ -1.14
USP3-218ENST00000560202 TEX48A0A1B0GUV7 120 aa7.95□□□□□ -1.14
USP3-218ENST00000560202 P0DMU3 169 aa7.95□□□□□ -1.14
USP3-218ENST00000560202 FAM231AP0DMU4 169 aa7.95□□□□□ -1.14
USP3-218ENST00000560202 FAM231CP0DMU5 169 aa7.95□□□□□ -1.14
USP3-218ENST00000560202 DAD1P61803 113 aa7.95□□□□□ -1.14
USP3-218ENST00000560202 TM2D2Q9BX73 214 aa7.95□□□□□ -1.14
USP3-218ENST00000560202 VCX2Q9H322 139 aa7.95□□□□□ -1.14
USP3-218ENST00000560202 NXT2Q9NPJ8 142 aaKnown RBP7.95□□□□□ -1.14
USP3-218ENST00000560202 IGLV2-18A0A075B6J9 118 aa7.94□□□□□ -1.14
USP3-218ENST00000560202 TRGV4A0A0C4DH28 118 aa7.94□□□□□ -1.14
USP3-218ENST00000560202 LINC01546A6NGU7 62 aa7.94□□□□□ -1.14
USP3-218ENST00000560202 FHL2Q14192 279 aa7.94□□□□□ -1.14
USP3-218ENST00000560202 Q8N8P6 123 aa7.94□□□□□ -1.14
USP3-218ENST00000560202 SLC25A29Q8N8R3 303 aa7.94□□□□□ -1.14
USP3-218ENST00000560202 SMIM2Q9BVW6 85 aa7.94□□□□□ -1.14
USP3-218ENST00000560202 SDHAF1A6NFY7 115 aa7.93□□□□□ -1.14
USP3-218ENST00000560202 H0Y8G0 127 aa7.93□□□□□ -1.14
USP3-218ENST00000560202 K7EQD1 137 aa7.93□□□□□ -1.14
USP3-218ENST00000560202 POLR2KP53803 58 aaKnown RBP7.93□□□□□ -1.14
USP3-218ENST00000560202 RPL32P62910 135 aaKnown RBP7.93□□□□□ -1.14
USP3-218ENST00000560202 NEXN-AS1Q8NBZ9 246 aa7.93□□□□□ -1.14
USP3-218ENST00000560202 ATP6V0E2Q8NHE4 81 aa7.93□□□□□ -1.14
USP3-218ENST00000560202 IFI27L1Q96BM0 104 aa7.93□□□□□ -1.14
USP3-218ENST00000560202 ZMAT4Q9H898 229 aa7.93□□□□□ -1.14
USP3-218ENST00000560202 SPANXB1Q9NS25 103 aaPredicted RBP7.93□□□□□ -1.14
USP3-218ENST00000560202 Q9UF83 564 aa7.93□□□□□ -1.14
USP3-218ENST00000560202 A0A0J9YWU9 116 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 TRBV6-4A0A1B0GX49 114 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 E9PLD3 99 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 DNAJC30Q96LL9 226 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 B9D2Q9BPU9 175 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 TNFRSF18Q9Y5U5 241 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 HUWE1Q7Z6Z7 4374 aaKnown RBP7.92□□□□□ -1.14
USP3-218ENST00000560202 NACAE9PAV3 2078 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 TRBV10-1A0A0K0K1A3 114 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 VCYO14598 125 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 ATP5G1P05496 136 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 HHLA3Q9XRX5 114 aa7.92□□□□□ -1.14
USP3-218ENST00000560202 A0A096LNJ9 63 aa7.91□□□□□ -1.14
USP3-218ENST00000560202 TRBV27A0A0K0K1C4 114 aa7.91□□□□□ -1.14
USP3-218ENST00000560202 ATP5LO75964 103 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms