RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 C20orf203Q8NBC4 194 aa10.5□□□□□ -0.73
CCDC88C-209ENST00000554872 FAT1Q14517 4588 aa10.5□□□□□ -0.73
CCDC88C-209ENST00000554872 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.49□□□□□ -0.73
CCDC88C-209ENST00000554872 TRAV8-4A0A0B4J246 113 aa10.49□□□□□ -0.73
CCDC88C-209ENST00000554872 A0A1B0GUT8 65 aa10.49□□□□□ -0.73
CCDC88C-209ENST00000554872 HIGD1CA8MV81 97 aa10.49□□□□□ -0.73
CCDC88C-209ENST00000554872 Q5VSD8 79 aa10.49□□□□□ -0.73
CCDC88C-209ENST00000554872 LINC00269Q8N2A0 174 aa10.49□□□□□ -0.73
CCDC88C-209ENST00000554872 BORCS7Q96B45 105 aa10.49□□□□□ -0.73
CCDC88C-209ENST00000554872 FAM30AQ9NZY2 134 aa10.49□□□□□ -0.73
CCDC88C-209ENST00000554872 TRAV26-2A0A0B4J265 109 aa10.48□□□□□ -0.73
CCDC88C-209ENST00000554872 AMTP48728 403 aa10.48□□□□□ -0.73
CCDC88C-209ENST00000554872 REG3AQ06141 175 aa10.48□□□□□ -0.73
CCDC88C-209ENST00000554872 ISOC2Q96AB3 205 aa10.48□□□□□ -0.73
CCDC88C-209ENST00000554872 TMEM191AQ9H0A3 160 aa10.48□□□□□ -0.73
CCDC88C-209ENST00000554872 V9GYV3 84 aa10.48□□□□□ -0.73
CCDC88C-209ENST00000554872 H7C423 109 aa10.47□□□□□ -0.73
CCDC88C-209ENST00000554872 TMEM241Q24JQ0 296 aa10.47□□□□□ -0.73
CCDC88C-209ENST00000554872 DNAH8Q96JB1 4490 aa10.47□□□□□ -0.73
CCDC88C-209ENST00000554872 SRRM2Q9UQ35 2752 aaKnown RBP10.47□□□□□ -0.73
CCDC88C-209ENST00000554872 IGLV4-60A0A075B6I1 120 aa10.46□□□□□ -0.73
CCDC88C-209ENST00000554872 USP17L23D6RBM5 183 aa10.46□□□□□ -0.73
CCDC88C-209ENST00000554872 UBE2L6O14933 153 aa10.46□□□□□ -0.73
CCDC88C-209ENST00000554872 RPL39LQ96EH5 51 aaKnown RBP10.46□□□□□ -0.73
CCDC88C-209ENST00000554872 VPS13BQ7Z7G8 4022 aa10.45□□□□□ -0.74
CCDC88C-209ENST00000554872 SDHAF1A6NFY7 115 aa10.45□□□□□ -0.74
CCDC88C-209ENST00000554872 FAM229AH3BQW9 127 aa10.45□□□□□ -0.74
CCDC88C-209ENST00000554872 HLA-DQA1P01909 254 aa10.45□□□□□ -0.74
CCDC88C-209ENST00000554872 RPL23P62829 140 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-209ENST00000554872 PEA15Q15121 130 aa10.45□□□□□ -0.74
CCDC88C-209ENST00000554872 DGAT2L7PQ6IED9 249 aa10.45□□□□□ -0.74
CCDC88C-209ENST00000554872 MRAP2Q96G30 205 aa10.45□□□□□ -0.74
CCDC88C-209ENST00000554872 NAT8Q9UHE5 227 aa10.45□□□□□ -0.74
CCDC88C-209ENST00000554872 C9JQL5 133 aa10.44□□□□□ -0.74
CCDC88C-209ENST00000554872 CLPSL2Q6UWE3 100 aa10.44□□□□□ -0.74
CCDC88C-209ENST00000554872 CLRN3Q8NCR9 226 aa10.44□□□□□ -0.74
CCDC88C-209ENST00000554872 APCSP02743 223 aa10.43□□□□□ -0.74
CCDC88C-209ENST00000554872 NUP35Q8NFH5 326 aa10.43□□□□□ -0.74
CCDC88C-209ENST00000554872 RNF185Q96GF1 192 aa10.43□□□□□ -0.74
CCDC88C-209ENST00000554872 NAT8BQ9UHF3 227 aa10.43□□□□□ -0.74
CCDC88C-209ENST00000554872 I3L3M4 83 aa10.42□□□□□ -0.74
CCDC88C-209ENST00000554872 SMR3BP02814 79 aaPredicted RBP10.42□□□□□ -0.74
CCDC88C-209ENST00000554872 PRSS1P07477 247 aa10.42□□□□□ -0.74
CCDC88C-209ENST00000554872 ZNF25P17030 456 aaPredicted RBP10.42□□□□□ -0.74
CCDC88C-209ENST00000554872 RAB4AP20338 218 aa10.42□□□□□ -0.74
CCDC88C-209ENST00000554872 HAMPP81172 84 aa10.42□□□□□ -0.74
CCDC88C-209ENST00000554872 RIGQ13278 110 aa10.42□□□□□ -0.74
CCDC88C-209ENST00000554872 CHAC1Q9BUX1 264 aa10.42□□□□□ -0.74
CCDC88C-209ENST00000554872 TRBV27A0A0K0K1C4 114 aa10.41□□□□□ -0.74
CCDC88C-209ENST00000554872 SMIM27A0A1W2PRY6 76 aa10.41□□□□□ -0.74
CCDC88C-209ENST00000554872 PPP1R17O96001 155 aa10.41□□□□□ -0.74
CCDC88C-209ENST00000554872 INAFM2P0DMQ5 153 aa10.41□□□□□ -0.74
CCDC88C-209ENST00000554872 POLR2KP53803 58 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-209ENST00000554872 CNBPP62633 177 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-209ENST00000554872 SRSF3P84103 164 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-209ENST00000554872 ST20Q9HBF5 79 aa10.41□□□□□ -0.74
CCDC88C-209ENST00000554872 A0A1B0GW15 77 aa10.4□□□□□ -0.74
CCDC88C-209ENST00000554872 ESDP10768 282 aa10.4□□□□□ -0.74
CCDC88C-209ENST00000554872 ADIRFQ15847 76 aa10.4□□□□□ -0.74
CCDC88C-209ENST00000554872 LINC01620Q4KN68 170 aa10.4□□□□□ -0.74
CCDC88C-209ENST00000554872 SCXQ7RTU7 201 aa10.4□□□□□ -0.74
CCDC88C-209ENST00000554872 C9orf163Q8N9P6 203 aa10.4□□□□□ -0.74
CCDC88C-209ENST00000554872 IGLV10-54A0A075B6I4 117 aa10.39□□□□□ -0.75
CCDC88C-209ENST00000554872 TSHBP01222 138 aa10.39□□□□□ -0.75
CCDC88C-209ENST00000554872 PMCHP20382 165 aa10.39□□□□□ -0.75
CCDC88C-209ENST00000554872 AMN1Q8IY45 258 aa10.39□□□□□ -0.75
CCDC88C-209ENST00000554872 GAS8-AS1O95177 125 aa10.38□□□□□ -0.75
CCDC88C-209ENST00000554872 FGF6P10767 208 aa10.38□□□□□ -0.75
CCDC88C-209ENST00000554872 RPS10P46783 165 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-209ENST00000554872 AMMECR1LQ6DCA0 310 aa10.38□□□□□ -0.75
CCDC88C-209ENST00000554872 MRPL52Q86TS9 123 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-209ENST00000554872 DEFB104AQ8WTQ1 72 aa10.38□□□□□ -0.75
CCDC88C-209ENST00000554872 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-209ENST00000554872 IGKV2-29A2NJV5 120 aaPredicted RBP10.37□□□□□ -0.75
CCDC88C-209ENST00000554872 PLA2G1BP04054 148 aaKnown RBP10.37□□□□□ -0.75
CCDC88C-209ENST00000554872 NRACQ8N912 160 aa10.37□□□□□ -0.75
CCDC88C-209ENST00000554872 FAM104BQ5XKR9 115 aa10.36□□□□□ -0.75
CCDC88C-209ENST00000554872 LINC00528Q8N1L1 170 aa10.36□□□□□ -0.75
CCDC88C-209ENST00000554872 CIRBP-AS1Q8TBR5 109 aa10.36□□□□□ -0.75
CCDC88C-209ENST00000554872 MYCBP2O75592 4640 aa10.35□□□□□ -0.75
CCDC88C-209ENST00000554872 LINC00862A6NCI5 91 aa10.35□□□□□ -0.75
CCDC88C-209ENST00000554872 VCYO14598 125 aa10.35□□□□□ -0.75
CCDC88C-209ENST00000554872 PPP1R2P9O14990 202 aa10.35□□□□□ -0.75
CCDC88C-209ENST00000554872 RPL32P62910 135 aaKnown RBP10.35□□□□□ -0.75
CCDC88C-209ENST00000554872 OR5A1Q8NGJ0 315 aa10.35□□□□□ -0.75
CCDC88C-209ENST00000554872 TMEM242Q9NWH2 141 aa10.35□□□□□ -0.75
CCDC88C-209ENST00000554872 TRBV24-1A0A075B6N3 115 aa10.34□□□□□ -0.75
CCDC88C-209ENST00000554872 C7orf77A4D0Y5 90 aa10.34□□□□□ -0.75
CCDC88C-209ENST00000554872 S100A8P05109 93 aa10.34□□□□□ -0.75
CCDC88C-209ENST00000554872 SUMO2P61956 95 aaKnown RBP10.34□□□□□ -0.75
CCDC88C-209ENST00000554872 RNASEKQ6P5S7 137 aaKnown RBP10.34□□□□□ -0.75
CCDC88C-209ENST00000554872 CFAP161Q6P656 301 aa10.34□□□□□ -0.75
CCDC88C-209ENST00000554872 TMEM101Q96IK0 257 aa10.34□□□□□ -0.75
CCDC88C-209ENST00000554872 BTF3L4Q96K17 158 aa10.34□□□□□ -0.75
CCDC88C-209ENST00000554872 CSDC2Q9Y534 153 aaKnown RBP10.34□□□□□ -0.75
CCDC88C-209ENST00000554872 DMBT1Q9UGM3 2413 aaPredicted RBP10.33□□□□□ -0.76
CCDC88C-209ENST00000554872 A0A1B0GXF2 115 aa10.33□□□□□ -0.76
CCDC88C-209ENST00000554872 hDV102S1A0JD36 115 aa10.33□□□□□ -0.76
CCDC88C-209ENST00000554872 CIRBPQ14011 172 aaKnown RBP10.33□□□□□ -0.76
CCDC88C-209ENST00000554872 MRPL51Q4U2R6 128 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 152.3 ms