RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 SNRPEP62304 92 aaKnown RBP6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 WDR73Q6P4I2 378 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 NTM-AS1Q6ZSK4 140 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 MAPKAPK5-AS1Q8N8E1 139 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 CNFNQ9BYD5 112 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 RPP21Q9H633 154 aaKnown RBP6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 FAT1Q14517 4588 aa6.83□□□□□ -1.32
CCDC88C-206ENST00000553437 TRAV8-3A0A0A6YYJ7 113 aa6.82□□□□□ -1.32
CCDC88C-206ENST00000553437 KRTAP10-1P60331 282 aa6.82□□□□□ -1.32
CCDC88C-206ENST00000553437 WFDC2Q14508 124 aa6.82□□□□□ -1.32
CCDC88C-206ENST00000553437 SUMO4Q6EEV6 95 aa6.82□□□□□ -1.32
CCDC88C-206ENST00000553437 GTSF1Q8WW33 167 aa6.82□□□□□ -1.32
CCDC88C-206ENST00000553437 ANAPC16Q96DE5 110 aa6.82□□□□□ -1.32
CCDC88C-206ENST00000553437 DNAJC30Q96LL9 226 aa6.82□□□□□ -1.32
CCDC88C-206ENST00000553437 C12orf57Q99622 126 aa6.82□□□□□ -1.32
CCDC88C-206ENST00000553437 CHCHD7Q9BUK0 85 aa6.82□□□□□ -1.32
CCDC88C-206ENST00000553437 TM2D2Q9BX73 214 aa6.82□□□□□ -1.32
CCDC88C-206ENST00000553437 DNAH8Q96JB1 4490 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 TRBV24-1A0A075B6N3 115 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 MGPP08493 103 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 S100PP25815 95 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 RPL23P62829 140 aaKnown RBP6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 S100A12P80511 92 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 FABP9Q0Z7S8 132 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 ADIRFQ15847 76 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 FAM231DQ6ZW35 169 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 Q8N814 137 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 KLK12Q9UKR0 248 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 URGCP-MRPS24S4R325 110 aa6.81□□□□□ -1.32
CCDC88C-206ENST00000553437 A0A087WX48 190 aa6.8□□□□□ -1.32
CCDC88C-206ENST00000553437 TGIF2-C20orf24A0A0A6YYL0 155 aa6.8□□□□□ -1.32
CCDC88C-206ENST00000553437 TRGC1P0CF51 173 aa6.8□□□□□ -1.32
CCDC88C-206ENST00000553437 XGP55808 180 aa6.8□□□□□ -1.32
CCDC88C-206ENST00000553437 BTF3L4Q96K17 158 aa6.8□□□□□ -1.32
CCDC88C-206ENST00000553437 DPH3P1Q9H4G8 78 aa6.8□□□□□ -1.32
CCDC88C-206ENST00000553437 DMBT1Q9UGM3 2413 aaPredicted RBP6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 TMEM262E9PQX1 116 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 H7C1H1 209 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 PPP1R2P9O14990 202 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 GATCO43716 136 aaKnown RBP6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 GCSHP23434 173 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 FOXA3P55318 350 aaPredicted RBP6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 TWIST1Q15672 202 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 MPV17L2Q567V2 206 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 TMEM97Q5BJF2 176 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 RASL11AQ6T310 242 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 ENHOQ6UWT2 76 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 LINC01551Q86U37 167 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 Q8N1X5 172 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 NTN5Q8WTR8 489 aaPredicted RBP6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 UBE2WQ96B02 151 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 COX11Q9Y6N1 276 aa6.79□□□□□ -1.32
CCDC88C-206ENST00000553437 IGLV5-52A0A0A0MRZ9 124 aa6.78□□□□□ -1.32
CCDC88C-206ENST00000553437 A8MWL6 223 aa6.78□□□□□ -1.32
CCDC88C-206ENST00000553437 NDUFA6P56556 154 aa6.78□□□□□ -1.32
CCDC88C-206ENST00000553437 IQCJQ1A5X6 159 aa6.78□□□□□ -1.32
CCDC88C-206ENST00000553437 CT83Q5H943 113 aa6.78□□□□□ -1.32
CCDC88C-206ENST00000553437 KCNIP4Q6PIL6 250 aa6.78□□□□□ -1.32
CCDC88C-206ENST00000553437 BAALCQ8WXS3 180 aa6.78□□□□□ -1.32
CCDC88C-206ENST00000553437 CHCHD5Q9BSY4 110 aa6.78□□□□□ -1.32
CCDC88C-206ENST00000553437 NIT2Q9NQR4 276 aa6.78□□□□□ -1.32
CCDC88C-206ENST00000553437 IGKV2D-24A0A075B6R9 120 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 LECT2O14960 151 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 TRGC2P03986 189 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 PKIAP61925 76 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 RBX1P62877 108 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 Q0VG73 95 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 Q8N976 141 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 GATD1Q8NB37 220 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 RMI2Q96E14 147 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 PGLYRP4Q96LB8 373 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 IMMP2LQ96T52 175 aa6.77□□□□□ -1.33
CCDC88C-206ENST00000553437 TRBV25-1A0A075B6N4 114 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 TRAV26-2A0A0B4J265 109 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 IGHV1-24A0A0C4DH33 117 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 PCP4L1A6NKN8 68 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST1H2BKO60814 126 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST1H2BJP06899 126 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST1H2BOP23527 126 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 S100A2P29034 98 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST1H2BBP33778 126 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST1H2BDP58876 126 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST1H2BCP62807 126 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 GAGE6Q13070 117 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST2H2BEQ16778 126 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 TSKUQ8WUA8 353 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 FRZBQ92765 325 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST1H2BHQ93079 126 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST1H2BNQ99877 126 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 HIST1H2BMQ99879 126 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 OSTCQ9NRP0 149 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 PRR34Q9NV39 138 aa6.76□□□□□ -1.33
CCDC88C-206ENST00000553437 PHOX2AO14813 284 aa6.75□□□□□ -1.33
CCDC88C-206ENST00000553437 ANGP03950 147 aaKnown RBP6.75□□□□□ -1.33
CCDC88C-206ENST00000553437 DEFB104AQ8WTQ1 72 aa6.75□□□□□ -1.33
CCDC88C-206ENST00000553437 GFRA4Q9GZZ7 299 aa6.75□□□□□ -1.33
CCDC88C-206ENST00000553437 TRAV9-1A0A075B6T8 112 aa6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 FAM231BA6NCW3 169 aa6.74□□□□□ -1.33
CCDC88C-206ENST00000553437 HIGD1CA8MV81 97 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms