RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 RHOHQ15669 191 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 FAM74A4Q5TZK3 123 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 FAM104BQ5XKR9 115 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 ATRAIDQ6UW56 229 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 SLC25A29Q8N8R3 303 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 MRAP2Q96G30 205 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 YPEL4Q96NS1 127 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 PRADC1Q9BSG0 188 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 GNB1LQ9BYB4 327 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 SAMD10Q9BYL1 202 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 MUC4Q99102 2169 aa3.99□□□□□ -1.77
SCAF11-213ENST00000550629 OBSCNQ5VST9 7968 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 K7EQD1 137 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 M0QY20 66 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 HLA-DQA1P01909 254 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 RAB4AP20338 218 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 SSTP61278 116 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 ELOBQ15370 118 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 ZNF56Q15929 161 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 MRPL54Q6P161 138 aaKnown RBP3.98□□□□□ -1.77
SCAF11-213ENST00000550629 VSIG2Q96IQ7 327 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 DNAJC30Q96LL9 226 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 URGCP-MRPS24S4R325 110 aa3.98□□□□□ -1.77
SCAF11-213ENST00000550629 DNAH9Q9NYC9 4486 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 TRBV7-3A0A075B6L6 115 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 IGHV3-73A0A0B4J1V6 119 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 TRBV6-5A0A0K0K1A5 114 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 PHOX2AO14813 284 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 MGPP08493 103 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 LINC00694P0DN24 101 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 MRPL23Q16540 153 aaKnown RBP3.97□□□□□ -1.77
SCAF11-213ENST00000550629 TMEM136Q6ZRR5 245 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 CBLN2Q8IUK8 224 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 AMN1Q8IY45 258 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.97□□□□□ -1.77
SCAF11-213ENST00000550629 RNF185Q96GF1 192 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 NIT2Q9NQR4 276 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 LAMTOR2Q9Y2Q5 125 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 ICOSQ9Y6W8 199 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 TENM2Q9NT68 2774 aa3.97□□□□□ -1.77
SCAF11-213ENST00000550629 TGIF2-C20orf24A0A0A6YYL0 155 aa3.96□□□□□ -1.78
SCAF11-213ENST00000550629 IGLL5B9A064 214 aa3.96□□□□□ -1.78
SCAF11-213ENST00000550629 APCSP02743 223 aa3.96□□□□□ -1.78
SCAF11-213ENST00000550629 SRIP30626 198 aa3.96□□□□□ -1.78
SCAF11-213ENST00000550629 CKS2P33552 79 aa3.96□□□□□ -1.78
SCAF11-213ENST00000550629 RPL32P62910 135 aaKnown RBP3.96□□□□□ -1.78
SCAF11-213ENST00000550629 MRPL51Q4U2R6 128 aaKnown RBP3.96□□□□□ -1.78
SCAF11-213ENST00000550629 TMEM97Q5BJF2 176 aa3.96□□□□□ -1.78
SCAF11-213ENST00000550629 CASC10Q5T4H9 136 aa3.96□□□□□ -1.78
SCAF11-213ENST00000550629 NEGR1Q7Z3B1 354 aa3.96□□□□□ -1.78
SCAF11-213ENST00000550629 DAZ4Q86SG3 579 aaKnown RBP3.96□□□□□ -1.78
SCAF11-213ENST00000550629 ORMDL3Q8N138 153 aa3.96□□□□□ -1.78
SCAF11-213ENST00000550629 C20orf78Q9BR46 151 aa3.96□□□□□ -1.78
SCAF11-213ENST00000550629 DAZ3Q9NR90 486 aaKnown RBP3.96□□□□□ -1.78
SCAF11-213ENST00000550629 HUWE1Q7Z6Z7 4374 aaKnown RBP3.95□□□□□ -1.78
SCAF11-213ENST00000550629 A0A096LPF7 62 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 A0A0J9YY99 117 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 TRBV27A0A0K0K1C4 114 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 COLCA2A8K830 154 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 TCAPO15273 167 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 P0DMU3 169 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 FAM231AP0DMU4 169 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 FAM231CP0DMU5 169 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 UBE2D3P61077 147 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 UBE2D2P62837 147 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 OR10J3Q5JRS4 329 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 ZFAND6Q6FIF0 208 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 ATP6V0E2Q8NHE4 81 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 ST20Q9HBF5 79 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 APLNQ9ULZ1 77 aa3.95□□□□□ -1.78
SCAF11-213ENST00000550629 TRAV26-2A0A0B4J265 109 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 LOC100131303A0A0U1RQF7 123 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 D6R8Y8 96 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 K7EMI3 77 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 VCYO14598 125 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 NCR2O95944 276 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 RAB5AP20339 215 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 CCL18P55774 89 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 GAGE5Q13069 117 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 ZNRF2Q8NHG8 242 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 PRELID3AQ96N28 172 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 GTSF1LQ9H1H1 148 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 Q9UF83 564 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 TRAPPC1Q9Y5R8 145 aa3.94□□□□□ -1.78
SCAF11-213ENST00000550629 SDHAF1A6NFY7 115 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 I3L3M4 83 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 K7EP13 123 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 CFC1BP0CG36 223 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 CFC1P0CG37 223 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 PMCHP20382 165 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 RPS10P46783 165 aaKnown RBP3.93□□□□□ -1.78
SCAF11-213ENST00000550629 POLR2KP53803 58 aaKnown RBP3.93□□□□□ -1.78
SCAF11-213ENST00000550629 PKIAP61925 76 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 FABP9Q0Z7S8 132 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 LGALS9CQ6DKI2 356 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 LYPD5Q6UWN5 251 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 RPL39LQ96EH5 51 aaKnown RBP3.93□□□□□ -1.78
SCAF11-213ENST00000550629 ALKBH7Q9BT30 221 aaPredicted RBP3.93□□□□□ -1.78
SCAF11-213ENST00000550629 UPK3BQ9BT76 320 aa3.93□□□□□ -1.78
SCAF11-213ENST00000550629 TMEM70Q9BUB7 260 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms