RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 BEAN1Q3B7T3 259 aa13.43□□□□□ -0.26
PRPF40B-208ENST00000548436 SPXQ9BT56 116 aa13.43□□□□□ -0.26
PRPF40B-208ENST00000548436 SCGB1D4Q6XE38 83 aa13.43□□□□□ -0.26
PRPF40B-208ENST00000548436 C1orf158Q8N1D5 194 aa13.43□□□□□ -0.26
PRPF40B-208ENST00000548436 FAM104AQ969W3 186 aa13.42□□□□□ -0.26
PRPF40B-208ENST00000548436 MTORP42345 2549 aa13.42□□□□□ -0.26
PRPF40B-208ENST00000548436 IGHV3OR16-12A0A075B7B8 117 aa13.41□□□□□ -0.26
PRPF40B-208ENST00000548436 FLNBO75369 2602 aaKnown RBP13.41□□□□□ -0.26
PRPF40B-208ENST00000548436 IGLL5B9A064 214 aa13.4□□□□□ -0.26
PRPF40B-208ENST00000548436 RS1O15537 224 aa13.4□□□□□ -0.26
PRPF40B-208ENST00000548436 RBX1P62877 108 aa13.4□□□□□ -0.26
PRPF40B-208ENST00000548436 VCX2Q9H322 139 aa13.4□□□□□ -0.26
PRPF40B-208ENST00000548436 NIPBLQ6KC79 2804 aaeCLIP13.4□□□□□ -0.26
PRPF40B-208ENST00000548436 A0A1B0GWB2 263 aa13.4□□□□□ -0.27
PRPF40B-208ENST00000548436 RHODO00212 210 aa13.4□□□□□ -0.27
PRPF40B-208ENST00000548436 IGHV3-53P01767 116 aa13.4□□□□□ -0.27
PRPF40B-208ENST00000548436 CEMP1Q6PRD7 247 aaPredicted RBP13.4□□□□□ -0.27
PRPF40B-208ENST00000548436 PYGO1Q9Y3Y4 419 aa13.4□□□□□ -0.27
PRPF40B-208ENST00000548436 A0A0J9YXV3 536 aa13.39□□□□□ -0.27
PRPF40B-208ENST00000548436 A0A0J9YY99 117 aa13.39□□□□□ -0.27
PRPF40B-208ENST00000548436 OR5A1Q8NGJ0 315 aa13.39□□□□□ -0.27
PRPF40B-208ENST00000548436 AMELXQ99217 191 aa13.39□□□□□ -0.27
PRPF40B-208ENST00000548436 TMEM223A0PJW6 202 aa13.38□□□□□ -0.27
PRPF40B-208ENST00000548436 ZNF22P17026 224 aaPredicted RBP13.38□□□□□ -0.27
PRPF40B-208ENST00000548436 OCIAD2Q56VL3 154 aa13.38□□□□□ -0.27
PRPF40B-208ENST00000548436 CHCHD7Q9BUK0 85 aa13.38□□□□□ -0.27
PRPF40B-208ENST00000548436 J3QQQ9 107 aa13.38□□□□□ -0.27
PRPF40B-208ENST00000548436 IL17DQ8TAD2 202 aa13.38□□□□□ -0.27
PRPF40B-208ENST00000548436 SAP30O75446 220 aa13.37□□□□□ -0.27
PRPF40B-208ENST00000548436 SRSF9Q13242 221 aaKnown RBP eCLIP13.37□□□□□ -0.27
PRPF40B-208ENST00000548436 SETXQ7Z333 2677 aaKnown RBP13.37□□□□□ -0.27
PRPF40B-208ENST00000548436 ZNF479Q96JC4 524 aa13.36□□□□□ -0.27
PRPF40B-208ENST00000548436 IGHV3-38A0A0C4DH36 116 aa13.36□□□□□ -0.27
PRPF40B-208ENST00000548436 DNAJC30Q96LL9 226 aa13.36□□□□□ -0.27
PRPF40B-208ENST00000548436 ADARB2-AS1A8MUL3 147 aa13.35□□□□□ -0.27
PRPF40B-208ENST00000548436 RNASE13Q5GAN3 156 aaKnown RBP13.35□□□□□ -0.27
PRPF40B-208ENST00000548436 NOTCH2Q04721 2471 aa13.35□□□□□ -0.27
PRPF40B-208ENST00000548436 LEPROTO15243 131 aa13.35□□□□□ -0.27
PRPF40B-208ENST00000548436 LGALS3P17931 250 aaKnown RBP13.35□□□□□ -0.27
PRPF40B-208ENST00000548436 HILS1P60008 231 aa13.35□□□□□ -0.27
PRPF40B-208ENST00000548436 WFDC10AQ9H1F0 79 aa13.35□□□□□ -0.27
PRPF40B-208ENST00000548436 IGHV3-64A0A075B6Q5 118 aa13.34□□□□□ -0.27
PRPF40B-208ENST00000548436 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.34□□□□□ -0.27
PRPF40B-208ENST00000548436 TRGV1A0A0A0MS02 117 aa13.34□□□□□ -0.27
PRPF40B-208ENST00000548436 IGKV2-29A2NJV5 120 aaPredicted RBP13.34□□□□□ -0.27
PRPF40B-208ENST00000548436 ZNF418Q8TF45 676 aaPredicted RBP13.34□□□□□ -0.27
PRPF40B-208ENST00000548436 SMR3AQ99954 134 aa13.34□□□□□ -0.27
PRPF40B-208ENST00000548436 UBE2D4Q9Y2X8 147 aa13.34□□□□□ -0.27
PRPF40B-208ENST00000548436 GIG44P09565 113 aaPredicted RBP13.33□□□□□ -0.27
PRPF40B-208ENST00000548436 RRN3P1Q2M238 152 aa13.33□□□□□ -0.27
PRPF40B-208ENST00000548436 SLC25A29Q8N8R3 303 aa13.33□□□□□ -0.27
PRPF40B-208ENST00000548436 JMJD1CQ15652 2540 aa13.33□□□□□ -0.28
PRPF40B-208ENST00000548436 IGLV1-51P01701 117 aa13.33□□□□□ -0.28
PRPF40B-208ENST00000548436 CRYBA4P53673 196 aa13.33□□□□□ -0.28
PRPF40B-208ENST00000548436 MRPS36P82909 103 aaKnown RBP13.33□□□□□ -0.28
PRPF40B-208ENST00000548436 SPANXB1Q9NS25 103 aaPredicted RBP13.33□□□□□ -0.28
PRPF40B-208ENST00000548436 CBY1Q9Y3M2 126 aa13.33□□□□□ -0.28
PRPF40B-208ENST00000548436 UBE2D1P51668 147 aa13.32□□□□□ -0.28
PRPF40B-208ENST00000548436 TMEM238LA0A1B0GVL6 79 aa13.32□□□□□ -0.28
PRPF40B-208ENST00000548436 A6NJY4 79 aa13.32□□□□□ -0.28
PRPF40B-208ENST00000548436 RNF151Q2KHN1 245 aa13.32□□□□□ -0.28
PRPF40B-208ENST00000548436 Q6ZTI0 123 aa13.32□□□□□ -0.28
PRPF40B-208ENST00000548436 C19orf73Q9NVV2 129 aa13.32□□□□□ -0.28
PRPF40B-208ENST00000548436 NOTCH3Q9UM47 2321 aa13.31□□□□□ -0.28
PRPF40B-208ENST00000548436 IGHV3-30P01768 117 aa13.31□□□□□ -0.28
PRPF40B-208ENST00000548436 IGHV3-30-5P0DP03 117 aa13.31□□□□□ -0.28
PRPF40B-208ENST00000548436 COTL1Q14019 142 aa13.31□□□□□ -0.28
PRPF40B-208ENST00000548436 TMEM263Q8WUH6 116 aaKnown RBP13.31□□□□□ -0.28
PRPF40B-208ENST00000548436 SPANXA1Q9NS26 97 aa13.31□□□□□ -0.28
PRPF40B-208ENST00000548436 CMC4P56277 68 aaPredicted RBP13.3□□□□□ -0.28
PRPF40B-208ENST00000548436 NDUFA7O95182 113 aa13.29□□□□□ -0.28
PRPF40B-208ENST00000548436 Q6ZUT4 128 aa13.29□□□□□ -0.28
PRPF40B-208ENST00000548436 PGPEP1Q9NXJ5 209 aa13.29□□□□□ -0.28
PRPF40B-208ENST00000548436 RPL35AP18077 110 aaKnown RBP13.28□□□□□ -0.28
PRPF40B-208ENST00000548436 IGHV3-30-3P0DP02 117 aa13.27□□□□□ -0.28
PRPF40B-208ENST00000548436 FAM110AQ9BQ89 295 aa13.27□□□□□ -0.28
PRPF40B-208ENST00000548436 NOP10Q9NPE3 64 aaKnown RBP13.27□□□□□ -0.28
PRPF40B-208ENST00000548436 TRAV8-3A0A0A6YYJ7 113 aa13.27□□□□□ -0.29
PRPF40B-208ENST00000548436 K7ERU9 68 aa13.27□□□□□ -0.29
PRPF40B-208ENST00000548436 APOMO95445 188 aa13.27□□□□□ -0.29
PRPF40B-208ENST00000548436 TINCRA0A1B0GVN0 87 aa13.26□□□□□ -0.29
PRPF40B-208ENST00000548436 PLAC8L1A1L4L8 177 aa13.26□□□□□ -0.29
PRPF40B-208ENST00000548436 H3BMG7 143 aa13.26□□□□□ -0.29
PRPF40B-208ENST00000548436 KRTAP10-3P60369 221 aa13.26□□□□□ -0.29
PRPF40B-208ENST00000548436 C10orf126Q8N4M7 172 aa13.26□□□□□ -0.29
PRPF40B-208ENST00000548436 TIMM21Q9BVV7 248 aa13.26□□□□□ -0.29
PRPF40B-208ENST00000548436 HIVEP2P31629 2446 aa13.26□□□□□ -0.29
PRPF40B-208ENST00000548436 TRAV4A0A0B4J268 109 aa13.25□□□□□ -0.29
PRPF40B-208ENST00000548436 NDUFA11Q86Y39 141 aa13.25□□□□□ -0.29
PRPF40B-208ENST00000548436 K7EQD1 137 aa13.25□□□□□ -0.29
PRPF40B-208ENST00000548436 TSPAN13O95857 204 aa13.25□□□□□ -0.29
PRPF40B-208ENST00000548436 CFC1BP0CG36 223 aa13.25□□□□□ -0.29
PRPF40B-208ENST00000548436 CFC1P0CG37 223 aa13.25□□□□□ -0.29
PRPF40B-208ENST00000548436 DAZ2Q13117 558 aaKnown RBP13.24□□□□□ -0.29
PRPF40B-208ENST00000548436 CSNK1G2-AS1Q8NCQ2 148 aa13.24□□□□□ -0.29
PRPF40B-208ENST00000548436 IGHV1-58A0A0C4DH39 117 aa13.23□□□□□ -0.29
PRPF40B-208ENST00000548436 TRBV10-1A0A0K0K1A3 114 aa13.23□□□□□ -0.29
PRPF40B-208ENST00000548436 A0A0J9YXY3 114 aa13.22□□□□□ -0.29
PRPF40B-208ENST00000548436 RPL36AP83881 106 aaKnown RBP13.22□□□□□ -0.29
PRPF40B-208ENST00000548436 RPL36ALQ969Q0 106 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms