RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 C20orf203Q8NBC4 194 aa11.72□□□□□ -0.53
CUX1-211ENST00000546411 C5orf38Q86SI9 138 aa11.72□□□□□ -0.53
CUX1-211ENST00000546411 LEPROTO15243 131 aa11.71□□□□□ -0.53
CUX1-211ENST00000546411 HIGD1BQ9P298 99 aa11.71□□□□□ -0.53
CUX1-211ENST00000546411 PSMB8P28062 276 aa11.71□□□□□ -0.53
CUX1-211ENST00000546411 DEFB4AO15263 64 aa11.71□□□□□ -0.54
CUX1-211ENST00000546411 MAP6D1Q9H9H5 199 aa11.71□□□□□ -0.54
CUX1-211ENST00000546411 TRBV20-1A0A075B6N2 111 aa11.71□□□□□ -0.54
CUX1-211ENST00000546411 CFC1BP0CG36 223 aa11.71□□□□□ -0.54
CUX1-211ENST00000546411 CFC1P0CG37 223 aa11.71□□□□□ -0.54
CUX1-211ENST00000546411 MED14OSP0DP75 135 aa11.71□□□□□ -0.54
CUX1-211ENST00000546411 C10orf126Q8N4M7 172 aa11.71□□□□□ -0.54
CUX1-211ENST00000546411 ATMQ13315 3056 aa11.7□□□□□ -0.54
CUX1-211ENST00000546411 DNAJC9-AS1A6NH13 148 aa11.7□□□□□ -0.54
CUX1-211ENST00000546411 H3BMM0 161 aa11.7□□□□□ -0.54
CUX1-211ENST00000546411 SLC25A20O43772 301 aa11.7□□□□□ -0.54
CUX1-211ENST00000546411 Q6YL49 198 aa11.7□□□□□ -0.54
CUX1-211ENST00000546411 PTH2Q96A98 100 aa11.7□□□□□ -0.54
CUX1-211ENST00000546411 TIMM17AQ99595 171 aa11.7□□□□□ -0.54
CUX1-211ENST00000546411 XCL1P47992 114 aa11.69□□□□□ -0.54
CUX1-211ENST00000546411 PIFOQ8TCI5 191 aa11.69□□□□□ -0.54
CUX1-211ENST00000546411 GAGE2BQ13066 116 aa11.69□□□□□ -0.54
CUX1-211ENST00000546411 GAGE2EQ4V326 116 aa11.69□□□□□ -0.54
CUX1-211ENST00000546411 GAGE2DQ9UEU5 116 aa11.69□□□□□ -0.54
CUX1-211ENST00000546411 GAGE12HA6NDE8 117 aa11.69□□□□□ -0.54
CUX1-211ENST00000546411 DAD1P61803 113 aa11.69□□□□□ -0.54
CUX1-211ENST00000546411 A0A096LNJ9 63 aa11.68□□□□□ -0.54
CUX1-211ENST00000546411 S100A7L2Q5SY68 101 aa11.68□□□□□ -0.54
CUX1-211ENST00000546411 NTN5Q8WTR8 489 aaPredicted RBP11.68□□□□□ -0.54
CUX1-211ENST00000546411 NEXN-AS1Q8NBZ9 246 aa11.68□□□□□ -0.54
CUX1-211ENST00000546411 ANAPC13Q9BS18 74 aa11.68□□□□□ -0.54
CUX1-211ENST00000546411 SS18Q15532 418 aa11.68□□□□□ -0.54
CUX1-211ENST00000546411 Q6ZTI0 123 aa11.68□□□□□ -0.54
CUX1-211ENST00000546411 ZZEF1O43149 2961 aa11.67□□□□□ -0.54
CUX1-211ENST00000546411 HERVK_113P63121 156 aa11.67□□□□□ -0.54
CUX1-211ENST00000546411 Q6ZUT4 128 aa11.67□□□□□ -0.54
CUX1-211ENST00000546411 DCANP1Q8TF63 244 aa11.67□□□□□ -0.54
CUX1-211ENST00000546411 KALRNO60229 2985 aa11.66□□□□□ -0.54
CUX1-211ENST00000546411 PPDPFLQ8WWR9 84 aa11.66□□□□□ -0.54
CUX1-211ENST00000546411 IGLV10-54A0A075B6I4 117 aa11.66□□□□□ -0.54
CUX1-211ENST00000546411 IGLV1-40P01703 118 aa11.66□□□□□ -0.54
CUX1-211ENST00000546411 SPANXA1Q9NS26 97 aa11.66□□□□□ -0.54
CUX1-211ENST00000546411 ANGP03950 147 aaKnown RBP11.66□□□□□ -0.54
CUX1-211ENST00000546411 ZNF843Q8N446 348 aa11.66□□□□□ -0.54
CUX1-211ENST00000546411 TRBV7-3A0A075B6L6 115 aa11.65□□□□□ -0.54
CUX1-211ENST00000546411 TMEM89A2RUT3 159 aa11.65□□□□□ -0.54
CUX1-211ENST00000546411 C4orf3Q8WVX3 66 aa11.65□□□□□ -0.54
CUX1-211ENST00000546411 M0QY20 66 aa11.65□□□□□ -0.54
CUX1-211ENST00000546411 IGHV3-30-3P0DP02 117 aa11.65□□□□□ -0.54
CUX1-211ENST00000546411 DEFB114Q30KQ6 69 aa11.65□□□□□ -0.55
CUX1-211ENST00000546411 Q6ZSV7 163 aa11.65□□□□□ -0.55
CUX1-211ENST00000546411 CNFNQ9BYD5 112 aa11.65□□□□□ -0.55
CUX1-211ENST00000546411 USP24Q9UPU5 2620 aa11.64□□□□□ -0.55
CUX1-211ENST00000546411 WFDC10AQ9H1F0 79 aa11.64□□□□□ -0.55
CUX1-211ENST00000546411 ZNF702PQ9H963 129 aa11.64□□□□□ -0.55
CUX1-211ENST00000546411 CFAP46Q8IYW2 2715 aa11.64□□□□□ -0.55
CUX1-211ENST00000546411 ZFAND6Q6FIF0 208 aa11.63□□□□□ -0.55
CUX1-211ENST00000546411 A8MZ25 164 aa11.63□□□□□ -0.55
CUX1-211ENST00000546411 K7EQD1 137 aa11.63□□□□□ -0.55
CUX1-211ENST00000546411 KLLNB2CW77 178 aa11.63□□□□□ -0.55
CUX1-211ENST00000546411 CARD19Q96LW7 228 aa11.63□□□□□ -0.55
CUX1-211ENST00000546411 GYPEP15421 78 aa11.62□□□□□ -0.55
CUX1-211ENST00000546411 DEFB121Q5J5C9 76 aa11.62□□□□□ -0.55
CUX1-211ENST00000546411 UBE2WQ96B02 151 aa11.62□□□□□ -0.55
CUX1-211ENST00000546411 HHLA3Q9XRX5 114 aa11.62□□□□□ -0.55
CUX1-211ENST00000546411 GAGE2AQ6NT46 116 aa11.61□□□□□ -0.55
CUX1-211ENST00000546411 LINC00467Q9BRT7 94 aa11.61□□□□□ -0.55
CUX1-211ENST00000546411 C3orf56Q8N813 242 aa11.61□□□□□ -0.55
CUX1-211ENST00000546411 DPH3Q96FX2 82 aa11.61□□□□□ -0.55
CUX1-211ENST00000546411 DEFB135Q30KP9 77 aa11.6□□□□□ -0.55
CUX1-211ENST00000546411 CDKN2A-AS1Q9UH64 79 aa11.6□□□□□ -0.55
CUX1-211ENST00000546411 CRLF1O75462 422 aa11.6□□□□□ -0.55
CUX1-211ENST00000546411 IGLV4-3A0A075B6K6 122 aa11.6□□□□□ -0.55
CUX1-211ENST00000546411 LGALS9O00182 355 aa11.6□□□□□ -0.55
CUX1-211ENST00000546411 CRYGDP07320 174 aa11.6□□□□□ -0.55
CUX1-211ENST00000546411 DMXL1Q9Y485 3027 aa11.6□□□□□ -0.55
CUX1-211ENST00000546411 TACC2O95359 2948 aa11.59□□□□□ -0.55
CUX1-211ENST00000546411 FLNAP21333 2647 aaKnown RBP11.59□□□□□ -0.55
CUX1-211ENST00000546411 TM2D2Q9BX73 214 aa11.59□□□□□ -0.55
CUX1-211ENST00000546411 NDUFA11Q86Y39 141 aa11.59□□□□□ -0.55
CUX1-211ENST00000546411 RNF152Q8N8N0 203 aa11.59□□□□□ -0.55
CUX1-211ENST00000546411 VSIG2Q96IQ7 327 aa11.59□□□□□ -0.55
CUX1-211ENST00000546411 ZNF22P17026 224 aaPredicted RBP11.58□□□□□ -0.56
CUX1-211ENST00000546411 POLR2KP53803 58 aaKnown RBP11.58□□□□□ -0.56
CUX1-211ENST00000546411 DNAJC30Q96LL9 226 aa11.58□□□□□ -0.56
CUX1-211ENST00000546411 CLUHP3Q96NS8 147 aa11.58□□□□□ -0.56
CUX1-211ENST00000546411 TRBV27A0A0K0K1C4 114 aa11.57□□□□□ -0.56
CUX1-211ENST00000546411 RS1O15537 224 aa11.57□□□□□ -0.56
CUX1-211ENST00000546411 CLEC2BQ92478 149 aa11.57□□□□□ -0.56
CUX1-211ENST00000546411 C16orf74Q96GX8 76 aa11.57□□□□□ -0.56
CUX1-211ENST00000546411 MUC4Q99102 2169 aa11.57□□□□□ -0.56
CUX1-211ENST00000546411 IGHV4-4A0A075B6R2 117 aa11.57□□□□□ -0.56
CUX1-211ENST00000546411 SLC25A29Q8N8R3 303 aa11.57□□□□□ -0.56
CUX1-211ENST00000546411 IGHV1-58A0A0C4DH39 117 aa11.56□□□□□ -0.56
CUX1-211ENST00000546411 ATP6V0E2Q8NHE4 81 aa11.56□□□□□ -0.56
CUX1-211ENST00000546411 WDFY3Q8IZQ1 3526 aa11.56□□□□□ -0.56
CUX1-211ENST00000546411 DAZ2Q13117 558 aaKnown RBP11.56□□□□□ -0.56
CUX1-211ENST00000546411 CFAP126Q5VTH2 177 aa11.56□□□□□ -0.56
CUX1-211ENST00000546411 DAZ4Q86SG3 579 aaKnown RBP11.56□□□□□ -0.56
CUX1-211ENST00000546411 ODF3Q96PU9 254 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms