RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 TRAV9-1A0A075B6T8 112 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 TRAV34A0A0B4J273 112 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 IGKV3D-20A0A0C4DH25 116 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 GAGE12JA6NER3 117 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 K7EQM0 130 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 MGST1P10620 155 aaKnown RBP5.62□□□□□ -1.51
USP28-215ENST00000545608 GAGE4Q13068 117 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 GAGE5Q13069 117 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 SMIM7Q9BQ49 75 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 SNHG12Q9BXW3 62 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 PARLQ9H300 379 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 JPT2Q9H910 190 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 TMEM167BQ9NRX6 74 aa5.62□□□□□ -1.51
USP28-215ENST00000545608 DMBT1Q9UGM3 2413 aaPredicted RBP5.62□□□□□ -1.51
USP28-215ENST00000545608 C20orf202A1L168 122 aa5.61□□□□□ -1.51
USP28-215ENST00000545608 CXorf1O96002 111 aa5.61□□□□□ -1.51
USP28-215ENST00000545608 LINC00694P0DN24 101 aa5.61□□□□□ -1.51
USP28-215ENST00000545608 CCL20P78556 96 aa5.61□□□□□ -1.51
USP28-215ENST00000545608 ADIRFQ15847 76 aa5.61□□□□□ -1.51
USP28-215ENST00000545608 CFAP161Q6P656 301 aa5.61□□□□□ -1.51
USP28-215ENST00000545608 SAMD10Q9BYL1 202 aa5.61□□□□□ -1.51
USP28-215ENST00000545608 ZFP30Q9Y2G7 519 aa5.61□□□□□ -1.51
USP28-215ENST00000545608 A0A1W2PRE2 83 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 FABP5P3A8MUU1 101 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 A8MWV9 139 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 LECT2O14960 151 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 S100A4P26447 101 aaKnown RBP5.6□□□□□ -1.51
USP28-215ENST00000545608 CRIP1P50238 77 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 LAGE3Q14657 143 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 ZNF726P1Q15940 193 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 COX19Q49B96 90 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 XP32Q5T750 250 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 UFSP1Q6NVU6 142 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 PET117Q6UWS5 81 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 ZFP2Q6ZN57 461 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 SMIM15Q7Z3B0 74 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 DAZ4Q86SG3 579 aaKnown RBP5.6□□□□□ -1.51
USP28-215ENST00000545608 C14orf178Q8N769 122 aaPredicted RBP5.6□□□□□ -1.51
USP28-215ENST00000545608 VAMP8Q9BV40 100 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 TM2D2Q9BX73 214 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 DAZ3Q9NR90 486 aaKnown RBP5.6□□□□□ -1.51
USP28-215ENST00000545608 ARL2-SNX15V9GYD0 113 aa5.6□□□□□ -1.51
USP28-215ENST00000545608 ASIPP42127 132 aa5.59□□□□□ -1.51
USP28-215ENST00000545608 UBE2G2P60604 165 aa5.59□□□□□ -1.51
USP28-215ENST00000545608 MEF2BQ02080 365 aaPredicted RBP5.59□□□□□ -1.51
USP28-215ENST00000545608 PIK3CD-AS1Q5SR53 167 aa5.59□□□□□ -1.51
USP28-215ENST00000545608 ORAOV1Q8WV07 137 aa5.59□□□□□ -1.51
USP28-215ENST00000545608 IL36BQ9NZH7 164 aa5.59□□□□□ -1.51
USP28-215ENST00000545608 TRAPPC1Q9Y5R8 145 aa5.59□□□□□ -1.51
USP28-215ENST00000545608 HERC1Q15751 4861 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.58□□□□□ -1.52
USP28-215ENST00000545608 TRAV8-3A0A0A6YYJ7 113 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 CTXND1A0A1B0GTU2 59 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 GRIFINA4D1Z8 144 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 PRSS47A8MTI9 375 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 H3BVH4 76 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 PEX7O00628 323 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 PDE6DO43924 150 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 ARMS2P0C7Q2 107 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 FGF8P55075 233 aaPredicted RBP5.58□□□□□ -1.52
USP28-215ENST00000545608 BAALCQ8WXS3 180 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 ZC2HC1AQ96GY0 325 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 DNAJC30Q96LL9 226 aa5.58□□□□□ -1.52
USP28-215ENST00000545608 SH2D1AO60880 128 aa5.57□□□□□ -1.52
USP28-215ENST00000545608 NPSP0C0P6 89 aa5.57□□□□□ -1.52
USP28-215ENST00000545608 RPS20P60866 119 aaKnown RBP5.57□□□□□ -1.52
USP28-215ENST00000545608 RPL23P62829 140 aaKnown RBP5.57□□□□□ -1.52
USP28-215ENST00000545608 LINC01620Q4KN68 170 aa5.57□□□□□ -1.52
USP28-215ENST00000545608 Q6ZSA8 131 aa5.57□□□□□ -1.52
USP28-215ENST00000545608 Q86TA4 180 aa5.57□□□□□ -1.52
USP28-215ENST00000545608 NIT1Q86X76 327 aa5.57□□□□□ -1.52
USP28-215ENST00000545608 UQCR10Q9UDW1 63 aa5.57□□□□□ -1.52
USP28-215ENST00000545608 MT-ND6P03923 174 aa5.56□□□□□ -1.52
USP28-215ENST00000545608 FAM74A4Q5TZK3 123 aa5.56□□□□□ -1.52
USP28-215ENST00000545608 TEX43Q6ZNM6 134 aa5.56□□□□□ -1.52
USP28-215ENST00000545608 COX8CQ7Z4L0 72 aa5.56□□□□□ -1.52
USP28-215ENST00000545608 SFRP2Q96HF1 295 aa5.56□□□□□ -1.52
USP28-215ENST00000545608 DNAH8Q96JB1 4490 aa5.56□□□□□ -1.52
USP28-215ENST00000545608 TMSB15BA0A087X1C1 80 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 RHODO00212 210 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 ESDP10768 282 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 BATFQ16520 125 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 FAM162BQ5T6X4 162 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 CST9LP1Q5W188 147 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 WDR73Q6P4I2 378 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 KLK12Q9UKR0 248 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 PHLDA3Q9Y5J5 127 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 COX11Q9Y6N1 276 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 VPS13BQ7Z7G8 4022 aa5.55□□□□□ -1.52
USP28-215ENST00000545608 IGKV2D-24A0A075B6R9 120 aa5.54□□□□□ -1.52
USP28-215ENST00000545608 M0R381 172 aa5.54□□□□□ -1.52
USP28-215ENST00000545608 HNRNPA3P51991 378 aaKnown RBP5.54□□□□□ -1.52
USP28-215ENST00000545608 PMCHL1Q16048 86 aa5.54□□□□□ -1.52
USP28-215ENST00000545608 SCXQ7RTU7 201 aa5.54□□□□□ -1.52
USP28-215ENST00000545608 BAGE3Q86Y29 109 aa5.54□□□□□ -1.52
USP28-215ENST00000545608 BAGE2Q86Y30 109 aa5.54□□□□□ -1.52
USP28-215ENST00000545608 Q8N976 141 aa5.54□□□□□ -1.52
USP28-215ENST00000545608 UBE2WQ96B02 151 aa5.54□□□□□ -1.52
USP28-215ENST00000545608 RMI2Q96E14 147 aa5.54□□□□□ -1.52
USP28-215ENST00000545608 MYCBP2O75592 4640 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms