RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268		F5H768	121 aa		11.14	□□□□□ -0.63
CHFR-223	ENST00000544268	CFC1B	P0CG36	223 aa		11.14	□□□□□ -0.63
CHFR-223	ENST00000544268	CFC1	P0CG37	223 aa		11.14	□□□□□ -0.63
CHFR-223	ENST00000544268	S100A4	P26447	101 aa	Known RBP	11.14	□□□□□ -0.63
CHFR-223	ENST00000544268	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	11.14	□□□□□ -0.63
CHFR-223	ENST00000544268	LINC01587	Q99440	93 aa		11.14	□□□□□ -0.63
CHFR-223	ENST00000544268	ELANE	P08246	267 aa		11.14	□□□□□ -0.63
CHFR-223	ENST00000544268	MGP	P08493	103 aa		11.14	□□□□□ -0.63
CHFR-223	ENST00000544268	TOMM6	Q96B49	74 aa		11.14	□□□□□ -0.63
CHFR-223	ENST00000544268	RNASE3	P12724	160 aa	Known RBP	11.13	□□□□□ -0.63
CHFR-223	ENST00000544268	ORMDL2	Q53FV1	153 aa		11.13	□□□□□ -0.63
CHFR-223	ENST00000544268	MDFIC	Q9P1T7	246 aa		11.13	□□□□□ -0.63
CHFR-223	ENST00000544268	PRO1854	Q9UHT4	67 aa		11.13	□□□□□ -0.63
CHFR-223	ENST00000544268	SETD2	Q9BYW2	2564 aa	Predicted RBP	11.13	□□□□□ -0.63
CHFR-223	ENST00000544268		C9JAW5	83 aa		11.13	□□□□□ -0.63
CHFR-223	ENST00000544268	LINC00477	Q96M19	166 aa		11.13	□□□□□ -0.63
CHFR-223	ENST00000544268		A0A0J9YY99	117 aa		11.12	□□□□□ -0.63
CHFR-223	ENST00000544268		Q8N1Y9	231 aa		11.12	□□□□□ -0.63
CHFR-223	ENST00000544268	RNF152	Q8N8N0	203 aa		11.12	□□□□□ -0.63
CHFR-223	ENST00000544268	SMIM2	Q9BVW6	85 aa		11.12	□□□□□ -0.63
CHFR-223	ENST00000544268	DAZ1	Q9NQZ3	744 aa	Known RBP	11.12	□□□□□ -0.63
CHFR-223	ENST00000544268	PHLDA3	Q9Y5J5	127 aa		11.12	□□□□□ -0.63
CHFR-223	ENST00000544268	IGHV4-4	A0A075B6R2	117 aa		11.11	□□□□□ -0.63
CHFR-223	ENST00000544268	TRAV21	A0A0B4J279	112 aa		11.11	□□□□□ -0.63
CHFR-223	ENST00000544268	FAM19A4	Q96LR4	140 aa		11.11	□□□□□ -0.63
CHFR-223	ENST00000544268	NSD1	Q96L73	2696 aa	Predicted RBP	11.11	□□□□□ -0.63
CHFR-223	ENST00000544268	TRAV12-2	A0A075B6T6	113 aa		11.11	□□□□□ -0.63
CHFR-223	ENST00000544268	KLHL30-AS1	Q8NEE0	82 aa		11.11	□□□□□ -0.63
CHFR-223	ENST00000544268	ODF3	Q96PU9	254 aa		11.11	□□□□□ -0.63
CHFR-223	ENST00000544268	IGHV3-30	P01768	117 aa		11.1	□□□□□ -0.63
CHFR-223	ENST00000544268	IGHV3-30-5	P0DP03	117 aa		11.1	□□□□□ -0.63
CHFR-223	ENST00000544268	LINC01600	Q96MT4	127 aa		11.1	□□□□□ -0.63
CHFR-223	ENST00000544268	OVOL1	O14753	267 aa		11.1	□□□□□ -0.63
CHFR-223	ENST00000544268	RNASE1	P07998	156 aa	Known RBP	11.1	□□□□□ -0.63
CHFR-223	ENST00000544268	C3orf56	Q8N813	242 aa		11.1	□□□□□ -0.63
CHFR-223	ENST00000544268	C15orf53	Q8NAA6	179 aa		11.1	□□□□□ -0.63
CHFR-223	ENST00000544268	BAALC	Q8WXS3	180 aa		11.1	□□□□□ -0.63
CHFR-223	ENST00000544268	UBE2E2	Q96LR5	201 aa		11.1	□□□□□ -0.63
CHFR-223	ENST00000544268	TRAV8-4	A0A0B4J246	113 aa		11.09	□□□□□ -0.63
CHFR-223	ENST00000544268	TRAV12-3	A0A0B4J271	114 aa		11.09	□□□□□ -0.63
CHFR-223	ENST00000544268	C18orf65	Q6ZTR6	163 aa		11.09	□□□□□ -0.63
CHFR-223	ENST00000544268	DCANP1	Q8TF63	244 aa		11.09	□□□□□ -0.63
CHFR-223	ENST00000544268	NTN5	Q8WTR8	489 aa	Predicted RBP	11.09	□□□□□ -0.63
CHFR-223	ENST00000544268		A0A087WWL8	130 aa		11.09	□□□□□ -0.63
CHFR-223	ENST00000544268	HILS1	P60008	231 aa		11.09	□□□□□ -0.63
CHFR-223	ENST00000544268	NIPBL	Q6KC79	2804 aa	eCLIP	11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	INAFM1	C9JVW0	142 aa		11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	RPL13A	P40429	203 aa	Known RBP	11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	SLC25A29	Q8N8R3	303 aa		11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	TMEM101	Q96IK0	257 aa		11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	MAST4	O15021	2626 aa		11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	SUMO2	P61956	95 aa	Known RBP	11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	MRPL23	Q16540	153 aa	Known RBP	11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	TRPT1	Q86TN4	253 aa	Known RBP	11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	LENEP	Q9Y5L5	61 aa		11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	FN1	P02751	2386 aa	Known RBP	11.08	□□□□□ -0.64
CHFR-223	ENST00000544268	IGHV4OR15-8	A0A075B7B6	117 aa		11.07	□□□□□ -0.64
CHFR-223	ENST00000544268		A0A087WW49	117 aa		11.07	□□□□□ -0.64
CHFR-223	ENST00000544268		P0DMU3	169 aa		11.07	□□□□□ -0.64
CHFR-223	ENST00000544268	FAM231A	P0DMU4	169 aa		11.07	□□□□□ -0.64
CHFR-223	ENST00000544268	FAM231C	P0DMU5	169 aa		11.07	□□□□□ -0.64
CHFR-223	ENST00000544268	KIR2DL5B	Q8NHK3	375 aa		11.07	□□□□□ -0.64
CHFR-223	ENST00000544268	HERVK_113	P61574	105 aa		11.07	□□□□□ -0.64
CHFR-223	ENST00000544268	SYNJ2BP	P57105	145 aa		11.06	□□□□□ -0.64
CHFR-223	ENST00000544268	DEFB136	Q30KP8	78 aa		11.06	□□□□□ -0.64
CHFR-223	ENST00000544268	DPH3P1	Q9H4G8	78 aa		11.06	□□□□□ -0.64
CHFR-223	ENST00000544268		J3KT08	172 aa		11.06	□□□□□ -0.64
CHFR-223	ENST00000544268	KHDC1L	Q5JSQ8	128 aa		11.06	□□□□□ -0.64
CHFR-223	ENST00000544268	PAPPA-AS1	Q5QFB9	102 aa		11.06	□□□□□ -0.64
CHFR-223	ENST00000544268	C2orf66	Q6UXQ4	117 aa		11.06	□□□□□ -0.64
CHFR-223	ENST00000544268	MRAP	Q8TCY5	172 aa		11.06	□□□□□ -0.64
CHFR-223	ENST00000544268	IGHV3-33	P01772	117 aa		11.05	□□□□□ -0.64
CHFR-223	ENST00000544268	EMP1	P54849	157 aa		11.05	□□□□□ -0.64
CHFR-223	ENST00000544268	LINC00315	P59091	139 aa		11.05	□□□□□ -0.64
CHFR-223	ENST00000544268	OR13C6P	Q8NH95	151 aa		11.05	□□□□□ -0.64
CHFR-223	ENST00000544268	TRAV2	A0A0B4J234	112 aa		11.05	□□□□□ -0.64
CHFR-223	ENST00000544268	PRM2	P04554	102 aa		11.05	□□□□□ -0.64
CHFR-223	ENST00000544268	HOXD3	P31249	432 aa	Predicted RBP	11.05	□□□□□ -0.64
CHFR-223	ENST00000544268	ATXN8	Q156A1	80 aa		11.05	□□□□□ -0.64
CHFR-223	ENST00000544268	LINC01006	Q8NI28	216 aa		11.05	□□□□□ -0.64
CHFR-223	ENST00000544268	KLLN	B2CW77	178 aa		11.04	□□□□□ -0.64
CHFR-223	ENST00000544268		K7EMT4	169 aa		11.04	□□□□□ -0.64
CHFR-223	ENST00000544268	LINC01620	Q4KN68	170 aa		11.04	□□□□□ -0.64
CHFR-223	ENST00000544268	C11orf44	Q8N8P7	122 aa		11.04	□□□□□ -0.64
CHFR-223	ENST00000544268	FAM74A4	Q5TZK3	123 aa		11.04	□□□□□ -0.64
CHFR-223	ENST00000544268	APRG1	Q8IVJ8	170 aa		11.04	□□□□□ -0.64
CHFR-223	ENST00000544268	TEX49	A0A1B0GTD5	131 aa		11.03	□□□□□ -0.64
CHFR-223	ENST00000544268		A0A1B0GX51	115 aa		11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	LGALS9	O00182	355 aa		11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	SPINK13	Q1W4C9	94 aa		11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	DUX3	Q96PT4	197 aa		11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	C16orf95	Q9H693	158 aa		11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	KIF25-AS1	Q9Y6Z4	181 aa		11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	F8	P00451	2351 aa		11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	C11orf86	A6NJI1	115 aa		11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	DUSP14	O95147	198 aa	Known RBP	11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	CRYGD	P07320	174 aa		11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	RPL39	P62891	51 aa	Known RBP	11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	TMEM263	Q8WUH6	116 aa	Known RBP	11.03	□□□□□ -0.64
CHFR-223	ENST00000544268	C4orf3	Q8WVX3	66 aa		11.03	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 133.5 ms