RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 PRR27Q6MZM9 219 aa9.91□□□□□ -0.82
RTN3-211ENST00000542238 Q6ZRU5 148 aa9.91□□□□□ -0.82
RTN3-211ENST00000542238 F5H697 171 aa9.9□□□□□ -0.82
RTN3-211ENST00000542238 BCL2P10415 239 aa9.9□□□□□ -0.82
RTN3-211ENST00000542238 CST9LP1Q5W188 147 aa9.9□□□□□ -0.82
RTN3-211ENST00000542238 SDIM1Q6ZPB5 146 aa9.9□□□□□ -0.82
RTN3-211ENST00000542238 PRR34Q9NV39 138 aa9.9□□□□□ -0.82
RTN3-211ENST00000542238 TMEM242Q9NWH2 141 aa9.9□□□□□ -0.82
RTN3-211ENST00000542238 RPS10P46783 165 aaKnown RBP9.89□□□□□ -0.83
RTN3-211ENST00000542238 CLPSL2Q6UWE3 100 aa9.89□□□□□ -0.83
RTN3-211ENST00000542238 LINC00269Q8N2A0 174 aa9.89□□□□□ -0.83
RTN3-211ENST00000542238 OR10AG1Q8NH19 301 aa9.89□□□□□ -0.83
RTN3-211ENST00000542238 DPH3Q96FX2 82 aa9.89□□□□□ -0.83
RTN3-211ENST00000542238 PKHD1L1Q86WI1 4243 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 TRBV25-1A0A075B6N4 114 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 PANO1I0J062 215 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 PDE6DO43924 150 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 PAGE4O60829 102 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 MT1HL1P0DM35 61 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 RBX1P62877 108 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 GAGE6Q13070 117 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 SPANXN1Q5VSR9 72 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 C11orf52Q96A22 123 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 DERL1Q9BUN8 251 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 CTDSP1Q9GZU7 261 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 NIT2Q9NQR4 276 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 VAX2Q9UIW0 290 aa9.88□□□□□ -0.83
RTN3-211ENST00000542238 ZNF727A8MUV8 499 aa9.87□□□□□ -0.83
RTN3-211ENST00000542238 LINC00587B1AMM8 73 aa9.87□□□□□ -0.83
RTN3-211ENST00000542238 CXCL1P09341 107 aa9.87□□□□□ -0.83
RTN3-211ENST00000542238 SMIM17P0DL12 118 aa9.87□□□□□ -0.83
RTN3-211ENST00000542238 MEF2BQ02080 365 aaPredicted RBP9.87□□□□□ -0.83
RTN3-211ENST00000542238 NTM-AS1Q6ZSK4 140 aa9.87□□□□□ -0.83
RTN3-211ENST00000542238 GNG13Q9P2W3 67 aa9.87□□□□□ -0.83
RTN3-211ENST00000542238 hDV102S1A0JD36 115 aa9.86□□□□□ -0.83
RTN3-211ENST00000542238 KRTAP26-1Q6PEX3 210 aa9.86□□□□□ -0.83
RTN3-211ENST00000542238 AP5S1Q9NUS5 200 aa9.86□□□□□ -0.83
RTN3-211ENST00000542238 TRBV24-1A0A075B6N3 115 aa9.85□□□□□ -0.83
RTN3-211ENST00000542238 IGHV3-64A0A075B6Q5 118 aa9.85□□□□□ -0.83
RTN3-211ENST00000542238 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.85□□□□□ -0.83
RTN3-211ENST00000542238 MUC21A0A0G2JKD1 596 aa9.85□□□□□ -0.83
RTN3-211ENST00000542238 MUC21A0A140T8X8 626 aa9.85□□□□□ -0.83
RTN3-211ENST00000542238 TMEM250H0YL14 139 aa9.85□□□□□ -0.83
RTN3-211ENST00000542238 SNAI2O43623 268 aa9.85□□□□□ -0.83
RTN3-211ENST00000542238 OR5AL1P0C617 328 aa9.85□□□□□ -0.83
RTN3-211ENST00000542238 CNBPP62633 177 aaKnown RBP9.85□□□□□ -0.83
RTN3-211ENST00000542238 REG3AQ06141 175 aa9.85□□□□□ -0.83
RTN3-211ENST00000542238 CIRBPQ14011 172 aaKnown RBP9.85□□□□□ -0.83
RTN3-211ENST00000542238 SSBP4Q9BWG4 385 aaPredicted RBP9.85□□□□□ -0.83
RTN3-211ENST00000542238 DPH3P1Q9H4G8 78 aa9.85□□□□□ -0.83
RTN3-211ENST00000542238 IGLV10-54A0A075B6I4 117 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 TGIF2-C20orf24A0A0A6YYL0 155 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 TRAV8-4A0A0B4J246 113 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 IGHV1-24A0A0C4DH33 117 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 P01737 135 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 S100A2P29034 98 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 CEBPGP53567 150 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 NDUFA6P56556 154 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 SSTP61278 116 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 IQCJQ1A5X6 159 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 SMIM12Q96EX1 92 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 RNF185Q96GF1 192 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 NAT8Q9UHE5 227 aa9.84□□□□□ -0.83
RTN3-211ENST00000542238 IFITM10A6NMD0 228 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST1H2BKO60814 126 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST1H2BJP06899 126 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST1H2BOP23527 126 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST1H2BBP33778 126 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST1H2BDP58876 126 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST1H2BCP62807 126 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST2H2BEQ16778 126 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST1H2BHQ93079 126 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 AP1S3Q96PC3 154 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST1H2BNQ99877 126 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 HIST1H2BMQ99879 126 aa9.83□□□□□ -0.84
RTN3-211ENST00000542238 PHOX2AO14813 284 aa9.82□□□□□ -0.84
RTN3-211ENST00000542238 PPP1R2P9O14990 202 aa9.82□□□□□ -0.84
RTN3-211ENST00000542238 BAGE2Q86Y30 109 aa9.82□□□□□ -0.84
RTN3-211ENST00000542238 HIST3H2BBQ8N257 126 aa9.82□□□□□ -0.84
RTN3-211ENST00000542238 A0A087WYN8 130 aa9.81□□□□□ -0.84
RTN3-211ENST00000542238 H7C1H1 209 aa9.81□□□□□ -0.84
RTN3-211ENST00000542238 GATCO43716 136 aaKnown RBP9.81□□□□□ -0.84
RTN3-211ENST00000542238 TRGC2P03986 189 aa9.81□□□□□ -0.84
RTN3-211ENST00000542238 GZMBP10144 247 aa9.81□□□□□ -0.84
RTN3-211ENST00000542238 MLST8Q9BVC4 326 aa9.81□□□□□ -0.84
RTN3-211ENST00000542238 KIF25-AS1Q9Y6Z4 181 aa9.81□□□□□ -0.84
RTN3-211ENST00000542238 SCO2A0A1W2PP80 73 aa9.8□□□□□ -0.84
RTN3-211ENST00000542238 TRGC1P0CF51 173 aa9.8□□□□□ -0.84
RTN3-211ENST00000542238 PYY3Q5JQD4 70 aa9.8□□□□□ -0.84
RTN3-211ENST00000542238 C7orf33Q8WU49 177 aa9.8□□□□□ -0.84
RTN3-211ENST00000542238 A0A1B0GUV1 79 aa9.79□□□□□ -0.84
RTN3-211ENST00000542238 MGPP08493 103 aa9.79□□□□□ -0.84
RTN3-211ENST00000542238 CHTF8P0CG12 524 aa9.79□□□□□ -0.84
RTN3-211ENST00000542238 TMEM241Q24JQ0 296 aa9.79□□□□□ -0.84
RTN3-211ENST00000542238 C20orf203Q8NBC4 194 aa9.79□□□□□ -0.84
RTN3-211ENST00000542238 SPACA4Q8TDM5 124 aa9.79□□□□□ -0.84
RTN3-211ENST00000542238 SMIM7Q9BQ49 75 aa9.79□□□□□ -0.84
RTN3-211ENST00000542238 TMEM243Q9BU79 118 aa9.79□□□□□ -0.84
RTN3-211ENST00000542238 M0QY20 66 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 134.1 ms