RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TRAV26-2A0A0B4J265 109 aa9.67□□□□□ -0.86
CLSTN3-213ENST00000541953 H7C1H1 209 aa9.67□□□□□ -0.86
CLSTN3-213ENST00000541953 H2AFB1P0C5Y9 115 aa9.67□□□□□ -0.86
CLSTN3-213ENST00000541953 AMTP48728 403 aa9.67□□□□□ -0.86
CLSTN3-213ENST00000541953 ZNF345Q14585 488 aa9.67□□□□□ -0.86
CLSTN3-213ENST00000541953 MAJINQ3KP22 176 aa9.67□□□□□ -0.86
CLSTN3-213ENST00000541953 LYZL1Q6UWQ5 148 aa9.67□□□□□ -0.86
CLSTN3-213ENST00000541953 LINC01600Q96MT4 127 aa9.67□□□□□ -0.86
CLSTN3-213ENST00000541953 NIT2Q9NQR4 276 aa9.67□□□□□ -0.86
CLSTN3-213ENST00000541953 GNG13Q9P2W3 67 aa9.67□□□□□ -0.86
CLSTN3-213ENST00000541953 A0A096LNI7 61 aa9.66□□□□□ -0.86
CLSTN3-213ENST00000541953 UMAD1C9J7I0 102 aa9.66□□□□□ -0.86
CLSTN3-213ENST00000541953 SULT1A2P50226 295 aa9.66□□□□□ -0.86
CLSTN3-213ENST00000541953 Q6ZNX1 250 aa9.66□□□□□ -0.86
CLSTN3-213ENST00000541953 LYPD6BQ8NI32 183 aa9.66□□□□□ -0.86
CLSTN3-213ENST00000541953 GTSF1Q8WW33 167 aa9.66□□□□□ -0.86
CLSTN3-213ENST00000541953 BCL2L11O43521 198 aa9.65□□□□□ -0.86
CLSTN3-213ENST00000541953 NTF3P20783 257 aa9.65□□□□□ -0.86
CLSTN3-213ENST00000541953 CACNG7P62955 275 aa9.65□□□□□ -0.86
CLSTN3-213ENST00000541953 GATD1Q8NB37 220 aa9.65□□□□□ -0.86
CLSTN3-213ENST00000541953 C7orf33Q8WU49 177 aa9.65□□□□□ -0.86
CLSTN3-213ENST00000541953 RPL39LQ96EH5 51 aaKnown RBP9.65□□□□□ -0.86
CLSTN3-213ENST00000541953 LINC00526Q96FQ7 95 aa9.65□□□□□ -0.86
CLSTN3-213ENST00000541953 DPH3P1Q9H4G8 78 aa9.65□□□□□ -0.86
CLSTN3-213ENST00000541953 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.64□□□□□ -0.87
CLSTN3-213ENST00000541953 IGKV2-29A2NJV5 120 aaPredicted RBP9.64□□□□□ -0.87
CLSTN3-213ENST00000541953 UBE2L6O14933 153 aa9.64□□□□□ -0.87
CLSTN3-213ENST00000541953 NDUFS6O75380 124 aaKnown RBP9.64□□□□□ -0.87
CLSTN3-213ENST00000541953 RPS10P46783 165 aaKnown RBP9.64□□□□□ -0.87
CLSTN3-213ENST00000541953 COTL1Q14019 142 aa9.64□□□□□ -0.87
CLSTN3-213ENST00000541953 WDR73Q6P4I2 378 aa9.64□□□□□ -0.87
CLSTN3-213ENST00000541953 STPG4Q8N801 248 aa9.64□□□□□ -0.87
CLSTN3-213ENST00000541953 CHCHD10Q8WYQ3 142 aaPredicted RBP9.64□□□□□ -0.87
CLSTN3-213ENST00000541953 GVQW2A0A096LPI5 108 aaPredicted RBP9.63□□□□□ -0.87
CLSTN3-213ENST00000541953 CTRLP40313 264 aa9.63□□□□□ -0.87
CLSTN3-213ENST00000541953 FOXA3P55318 350 aaPredicted RBP9.63□□□□□ -0.87
CLSTN3-213ENST00000541953 RPS20P60866 119 aaKnown RBP9.63□□□□□ -0.87
CLSTN3-213ENST00000541953 TRGC1P0CF51 173 aa9.62□□□□□ -0.87
CLSTN3-213ENST00000541953 GNG4P50150 75 aa9.62□□□□□ -0.87
CLSTN3-213ENST00000541953 KRTAP10-8P60410 259 aa9.62□□□□□ -0.87
CLSTN3-213ENST00000541953 FOXI1Q12951 378 aa9.62□□□□□ -0.87
CLSTN3-213ENST00000541953 MANBALQ9NQG1 85 aa9.62□□□□□ -0.87
CLSTN3-213ENST00000541953 A0A0J9YXV3 536 aa9.61□□□□□ -0.87
CLSTN3-213ENST00000541953 HMSDA8MTL9 139 aa9.61□□□□□ -0.87
CLSTN3-213ENST00000541953 IFNA1P01562 189 aa9.61□□□□□ -0.87
CLSTN3-213ENST00000541953 KANTRA0A1W2PQU2 76 aa9.6□□□□□ -0.87
CLSTN3-213ENST00000541953 F2Z2F3 143 aa9.6□□□□□ -0.87
CLSTN3-213ENST00000541953 C9orf62Q8N4C0 152 aa9.6□□□□□ -0.87
CLSTN3-213ENST00000541953 NUDT10Q8NFP7 164 aa9.6□□□□□ -0.87
CLSTN3-213ENST00000541953 NUDT11Q96G61 164 aa9.6□□□□□ -0.87
CLSTN3-213ENST00000541953 CNFNQ9BYD5 112 aa9.6□□□□□ -0.87
CLSTN3-213ENST00000541953 TRAV1-1A0A0B4J248 108 aa9.59□□□□□ -0.87
CLSTN3-213ENST00000541953 K7EN84 100 aa9.59□□□□□ -0.87
CLSTN3-213ENST00000541953 GAS8-AS1O95177 125 aa9.59□□□□□ -0.87
CLSTN3-213ENST00000541953 TWIST1Q15672 202 aa9.59□□□□□ -0.87
CLSTN3-213ENST00000541953 RGS21Q2M5E4 152 aa9.59□□□□□ -0.87
CLSTN3-213ENST00000541953 RNASEKQ6P5S7 137 aaKnown RBP9.59□□□□□ -0.87
CLSTN3-213ENST00000541953 CFAP161Q6P656 301 aa9.59□□□□□ -0.87
CLSTN3-213ENST00000541953 BATF3Q9NR55 127 aa9.59□□□□□ -0.87
CLSTN3-213ENST00000541953 FAM231BA6NCW3 169 aa9.58□□□□□ -0.88
CLSTN3-213ENST00000541953 FGF6P10767 208 aa9.58□□□□□ -0.88
CLSTN3-213ENST00000541953 XCL1P47992 114 aa9.58□□□□□ -0.88
CLSTN3-213ENST00000541953 MEF2BQ02080 365 aaPredicted RBP9.58□□□□□ -0.88
CLSTN3-213ENST00000541953 RNASE7Q9H1E1 156 aaKnown RBP9.58□□□□□ -0.88
CLSTN3-213ENST00000541953 SRSF9Q13242 221 aaKnown RBP eCLIP9.57□□□□□ -0.88
CLSTN3-213ENST00000541953 AMMECR1LQ6DCA0 310 aa9.57□□□□□ -0.88
CLSTN3-213ENST00000541953 SMIM12Q96EX1 92 aa9.57□□□□□ -0.88
CLSTN3-213ENST00000541953 MED9Q9NWA0 146 aa9.57□□□□□ -0.88
CLSTN3-213ENST00000541953 XKRY2A2RUG3 117 aa9.56□□□□□ -0.88
CLSTN3-213ENST00000541953 SDHAF1A6NFY7 115 aa9.55□□□□□ -0.88
CLSTN3-213ENST00000541953 CCL25O15444 150 aa9.55□□□□□ -0.88
CLSTN3-213ENST00000541953 APCSP02743 223 aa9.55□□□□□ -0.88
CLSTN3-213ENST00000541953 RPP21Q9H633 154 aaKnown RBP9.55□□□□□ -0.88
CLSTN3-213ENST00000541953 LINC00959A0A1B0GUT2 108 aa9.54□□□□□ -0.88
CLSTN3-213ENST00000541953 BCL2P10415 239 aa9.54□□□□□ -0.88
CLSTN3-213ENST00000541953 SPINK6Q6UWN8 80 aa9.54□□□□□ -0.88
CLSTN3-213ENST00000541953 OR5A1Q8NGJ0 315 aa9.54□□□□□ -0.88
CLSTN3-213ENST00000541953 CARD19Q96LW7 228 aa9.54□□□□□ -0.88
CLSTN3-213ENST00000541953 PDE6DO43924 150 aa9.53□□□□□ -0.88
CLSTN3-213ENST00000541953 NCR2O95944 276 aa9.53□□□□□ -0.88
CLSTN3-213ENST00000541953 TSHBP01222 138 aa9.53□□□□□ -0.88
CLSTN3-213ENST00000541953 OCC1Q8TAD7 63 aa9.53□□□□□ -0.88
CLSTN3-213ENST00000541953 ESDP10768 282 aa9.52□□□□□ -0.89
CLSTN3-213ENST00000541953 TMEM242Q9NWH2 141 aa9.52□□□□□ -0.89
CLSTN3-213ENST00000541953 IGHV1-58A0A0C4DH39 117 aa9.51□□□□□ -0.89
CLSTN3-213ENST00000541953 A0A1W2PNN7 141 aa9.51□□□□□ -0.89
CLSTN3-213ENST00000541953 H7C423 109 aa9.51□□□□□ -0.89
CLSTN3-213ENST00000541953 EIF5AP63241 154 aaKnown RBP9.51□□□□□ -0.89
CLSTN3-213ENST00000541953 REG3GQ6UW15 175 aa9.51□□□□□ -0.89
CLSTN3-213ENST00000541953 PTTG1IPP53801 180 aa9.5□□□□□ -0.89
CLSTN3-213ENST00000541953 Q6ZRP5 223 aa9.5□□□□□ -0.89
CLSTN3-213ENST00000541953 I3L3M4 83 aa9.49□□□□□ -0.89
CLSTN3-213ENST00000541953 ZNF25P17030 456 aaPredicted RBP9.49□□□□□ -0.89
CLSTN3-213ENST00000541953 SYCNQ0VAF6 134 aa9.49□□□□□ -0.89
CLSTN3-213ENST00000541953 BIN3Q9NQY0 253 aa9.49□□□□□ -0.89
CLSTN3-213ENST00000541953 IGLV4-69A0A075B6H9 119 aa9.48□□□□□ -0.89
CLSTN3-213ENST00000541953 TRBV6-5A0A0K0K1A5 114 aa9.48□□□□□ -0.89
CLSTN3-213ENST00000541953 PMCHP20382 165 aa9.48□□□□□ -0.89
CLSTN3-213ENST00000541953 GAGE2BQ13066 116 aa9.48□□□□□ -0.89
CLSTN3-213ENST00000541953 CDC42SE2Q9NRR3 84 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms