RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 CCL4P13236 92 aa2.66□□□□□ -1.98
YBX3-210ENST00000540975 FGF12P61328 243 aa2.66□□□□□ -1.98
YBX3-210ENST00000540975 RPL30P62888 115 aaKnown RBP2.66□□□□□ -1.98
YBX3-210ENST00000540975 RBM3P98179 157 aaKnown RBP2.66□□□□□ -1.98
YBX3-210ENST00000540975 BSPH1Q075Z2 132 aa2.66□□□□□ -1.98
YBX3-210ENST00000540975 ZNF56Q15929 161 aa2.66□□□□□ -1.98
YBX3-210ENST00000540975 PSMG4Q5JS54 123 aa2.66□□□□□ -1.98
YBX3-210ENST00000540975 FAM104BQ5XKR9 115 aa2.66□□□□□ -1.98
YBX3-210ENST00000540975 C16orf47Q6ZP98 133 aaPredicted RBP2.66□□□□□ -1.98
YBX3-210ENST00000540975 LINC00643Q86TS7 51 aa2.66□□□□□ -1.98
YBX3-210ENST00000540975 FGF23Q9GZV9 251 aaPredicted RBP2.66□□□□□ -1.98
YBX3-210ENST00000540975 LINC00474Q9P2X8 69 aa2.66□□□□□ -1.98
YBX3-210ENST00000540975 ATG2BQ96BY7 2078 aa2.65□□□□□ -1.98
YBX3-210ENST00000540975 IGHV1-45A0A0A0MS14 117 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 IGKV2-24A0A0C4DH68 120 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 IGKV1-12A0A0C4DH73 117 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 E7EQL1 145 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 C5orf67F2Z3F1 127 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 LEPROTL1O95214 131 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 IGKV1D-12P01611 117 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 CD28P10747 220 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 GCHFRP30047 84 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 CKS2P33552 79 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 RPS27P42677 84 aaKnown RBP2.65□□□□□ -1.99
YBX3-210ENST00000540975 RPL18Q07020 188 aaKnown RBP2.65□□□□□ -1.99
YBX3-210ENST00000540975 PATE2Q6UY27 113 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 SOSTDC1Q6X4U4 206 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 ATP11AUNQ6ZP68 121 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 C6orf201Q7Z4U5 140 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 FAM216BQ8N7L0 139 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 DAND5Q8N907 189 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 SND1-IT1Q9HBX3 110 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 CCL26Q9Y258 94 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 KIAA1549LQ6ZVL6 1849 aa2.65□□□□□ -1.99
YBX3-210ENST00000540975 TRBV7-3A0A075B6L6 115 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 IGHV3OR16-8A0A075B7F1 116 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 C17orf51A8MQB3 221 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 UBE2D3P61077 147 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 UBE2D2P62837 147 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 RHOHQ15669 191 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 DEFB134Q4QY38 66 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 DEFB121Q5J5C9 76 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 S100A7L2Q5SY68 101 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 CLEC2BQ92478 149 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 SLC50A1Q9BRV3 221 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 C8orf17Q9NRJ1 99 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 SEC16AO15027 2179 aa2.64□□□□□ -1.99
YBX3-210ENST00000540975 EXPH5Q8NEV8 1989 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 IGLV3-9A0A075B6K5 115 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 IGHV3OR15-7A0A075B7D8 119 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 C16orf90A8MZG2 172 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 H0YGG7 62 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 C19orf84I3L1E1 186 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 NDUFC1O43677 76 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 IGLV3-1P01715 115 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 TFF3Q07654 80 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 KISS1Q15726 138 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 Q1T7F1 81 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 RNASE13Q5GAN3 156 aaKnown RBP2.63□□□□□ -1.99
YBX3-210ENST00000540975 CHCHD2P9Q5T1J5 151 aaPredicted RBP2.63□□□□□ -1.99
YBX3-210ENST00000540975 LYPD5Q6UWN5 251 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 SPANXA2-OT1Q8N9U9 137 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 NABP2Q9BQ15 211 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 NHP2Q9NX24 153 aaKnown RBP2.63□□□□□ -1.99
YBX3-210ENST00000540975 MRPL35Q9NZE8 188 aaKnown RBP2.63□□□□□ -1.99
YBX3-210ENST00000540975 MED12LQ86YW9 2145 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 EP400Q96L91 3159 aa2.63□□□□□ -1.99
YBX3-210ENST00000540975 PTPRSQ13332 1948 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 SNRNP200O75643 2136 aaKnown RBP2.62□□□□□ -1.99
YBX3-210ENST00000540975 THADAQ6YHU6 1953 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 EML6Q6ZMW3 1958 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 C19orf71A6NCJ1 209 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 H3BMM0 161 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 H7BZZ5 65 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 LEPROTO15243 131 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 NPYP01303 97 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 IGKV1-39P01597 117 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 IGKV1D-39P04432 117 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 SAA1P0DJI8 122 aaPredicted RBP2.62□□□□□ -1.99
YBX3-210ENST00000540975 ARL14EPLP0DKL9 152 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 DEFA4P12838 97 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 FXYD4P59646 89 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 KRTAP6-3Q3LI67 103 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 SDIM1Q6ZPB5 146 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 PDPNQ86YL7 162 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 CCL4L1Q8NHW4 92 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 UBE2WQ96B02 151 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 PSENENQ9NZ42 101 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 TRPM6Q9BX84 2022 aa2.62□□□□□ -1.99
YBX3-210ENST00000540975 TRBV25-1A0A075B6N4 114 aa2.61□□□□□ -1.99
YBX3-210ENST00000540975 IGKV2D-26A0A0A0MRZ7 120 aa2.61□□□□□ -1.99
YBX3-210ENST00000540975 TRAV13-2A0A0B4J235 113 aa2.61□□□□□ -1.99
YBX3-210ENST00000540975 TRAV3A0A0B4J244 114 aa2.61□□□□□ -1.99
YBX3-210ENST00000540975 A0A1B0GW54 56 aa2.61□□□□□ -1.99
YBX3-210ENST00000540975 C3orf84H3BNL1 204 aa2.61□□□□□ -1.99
YBX3-210ENST00000540975 SLC25A20O43772 301 aa2.61□□□□□ -1.99
YBX3-210ENST00000540975 SPINK4O60575 86 aa2.61□□□□□ -1.99
YBX3-210ENST00000540975 BCE1O60756 84 aa2.61□□□□□ -1.99
YBX3-210ENST00000540975 MGST1P10620 155 aaKnown RBP2.61□□□□□ -1.99
YBX3-210ENST00000540975 IAPPP10997 89 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms