RNA–Protein interactions for RNA: ENST00000540537.5

CHFR-217, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 913 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-217ENST00000540537 GTSF1Q8WW33 167 aa13.63□□□□□ -0.23
CHFR-217ENST00000540537 GATCO43716 136 aaKnown RBP13.62□□□□□ -0.23
CHFR-217ENST00000540537 COTL1Q14019 142 aa13.62□□□□□ -0.23
CHFR-217ENST00000540537 GATD1Q8NB37 220 aa13.62□□□□□ -0.23
CHFR-217ENST00000540537 TRAV8-4A0A0B4J246 113 aa13.61□□□□□ -0.23
CHFR-217ENST00000540537 PRSS1P07477 247 aa13.61□□□□□ -0.23
CHFR-217ENST00000540537 SMIM15Q7Z3B0 74 aa13.61□□□□□ -0.23
CHFR-217ENST00000540537 IGLV4-60A0A075B6I1 120 aa13.6□□□□□ -0.23
CHFR-217ENST00000540537 A8MWL6 223 aa13.6□□□□□ -0.23
CHFR-217ENST00000540537 UBE2L6O14933 153 aa13.6□□□□□ -0.23
CHFR-217ENST00000540537 NDUFS6O75380 124 aaKnown RBP13.6□□□□□ -0.23
CHFR-217ENST00000540537 AMTP48728 403 aa13.6□□□□□ -0.23
CHFR-217ENST00000540537 CT83Q5H943 113 aa13.6□□□□□ -0.23
CHFR-217ENST00000540537 DGAT2L7PQ6IED9 249 aa13.6□□□□□ -0.23
CHFR-217ENST00000540537 TRAV26-2A0A0B4J265 109 aa13.59□□□□□ -0.23
CHFR-217ENST00000540537 IGLV10-54A0A075B6I4 117 aa13.58□□□□□ -0.24
CHFR-217ENST00000540537 CEBPGP53567 150 aa13.58□□□□□ -0.24
CHFR-217ENST00000540537 TEX261Q6UWH6 196 aa13.58□□□□□ -0.24
CHFR-217ENST00000540537 CIRBP-AS1Q8TBR5 109 aa13.58□□□□□ -0.24
CHFR-217ENST00000540537 DEFB104AQ8WTQ1 72 aa13.58□□□□□ -0.24
CHFR-217ENST00000540537 GFRA4Q9GZZ7 299 aa13.58□□□□□ -0.24
CHFR-217ENST00000540537 FOXA3P55318 350 aaPredicted RBP13.57□□□□□ -0.24
CHFR-217ENST00000540537 CLRN3Q8NCR9 226 aa13.57□□□□□ -0.24
CHFR-217ENST00000540537 SMIM7Q9BQ49 75 aa13.57□□□□□ -0.24
CHFR-217ENST00000540537 EIF5A2Q9GZV4 153 aaKnown RBP13.57□□□□□ -0.24
CHFR-217ENST00000540537 C9orf163Q8N9P6 203 aa13.56□□□□□ -0.24
CHFR-217ENST00000540537 RPL39LQ96EH5 51 aaKnown RBP13.56□□□□□ -0.24
CHFR-217ENST00000540537 NCR2O95944 276 aa13.55□□□□□ -0.24
CHFR-217ENST00000540537 FAM210AQ96ND0 272 aa13.55□□□□□ -0.24
CHFR-217ENST00000540537 LINC01551Q86U37 167 aa13.54□□□□□ -0.24
CHFR-217ENST00000540537 BORCS7Q96B45 105 aa13.54□□□□□ -0.24
CHFR-217ENST00000540537 TSKUQ8WUA8 353 aa13.53□□□□□ -0.24
CHFR-217ENST00000540537 SDHAF1A6NFY7 115 aa13.52□□□□□ -0.25
CHFR-217ENST00000540537 H7C423 109 aa13.52□□□□□ -0.25
CHFR-217ENST00000540537 SRP19P09132 144 aaKnown RBP13.52□□□□□ -0.25
CHFR-217ENST00000540537 CNBPP62633 177 aaKnown RBP13.52□□□□□ -0.25
CHFR-217ENST00000540537 TRBV6-5A0A0K0K1A5 114 aa13.51□□□□□ -0.25
CHFR-217ENST00000540537 FAM231BA6NCW3 169 aa13.51□□□□□ -0.25
CHFR-217ENST00000540537 ZNF727A8MUV8 499 aa13.51□□□□□ -0.25
CHFR-217ENST00000540537 HIGD1CA8MV81 97 aa13.51□□□□□ -0.25
CHFR-217ENST00000540537 APCSP02743 223 aa13.51□□□□□ -0.25
CHFR-217ENST00000540537 OSTCQ9NRP0 149 aa13.51□□□□□ -0.25
CHFR-217ENST00000540537 A0A1B0GUT8 65 aa13.5□□□□□ -0.25
CHFR-217ENST00000540537 hDV102S1A0JD36 115 aa13.5□□□□□ -0.25
CHFR-217ENST00000540537 KRTAP10-4P60372 401 aaPredicted RBP13.5□□□□□ -0.25
CHFR-217ENST00000540537 AMMECR1LQ6DCA0 310 aa13.5□□□□□ -0.25
CHFR-217ENST00000540537 SDIM1Q6ZPB5 146 aa13.49□□□□□ -0.25
CHFR-217ENST00000540537 TMEM191AQ9H0A3 160 aa13.49□□□□□ -0.25
CHFR-217ENST00000540537 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.48□□□□□ -0.25
CHFR-217ENST00000540537 IGKV2-29A2NJV5 120 aaPredicted RBP13.48□□□□□ -0.25
CHFR-217ENST00000540537 I3L3M4 83 aa13.48□□□□□ -0.25
CHFR-217ENST00000540537 AP5S1Q9NUS5 200 aa13.48□□□□□ -0.25
CHFR-217ENST00000540537 A0A1B0GVG6 124 aa13.47□□□□□ -0.25
CHFR-217ENST00000540537 KRTAP29-1A8MX34 341 aaPredicted RBP13.47□□□□□ -0.25
CHFR-217ENST00000540537 J3QL48 77 aa13.47□□□□□ -0.25
CHFR-217ENST00000540537 FGF6P10767 208 aa13.47□□□□□ -0.25
CHFR-217ENST00000540537 PMCHP20382 165 aa13.47□□□□□ -0.25
CHFR-217ENST00000540537 RNASEKQ6P5S7 137 aaKnown RBP13.47□□□□□ -0.25
CHFR-217ENST00000540537 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.47□□□□□ -0.25
CHFR-217ENST00000540537 PKHD1L1Q86WI1 4243 aa13.47□□□□□ -0.25
CHFR-217ENST00000540537 IGKV3OR2-268A0A0C4DH90 116 aa13.46□□□□□ -0.25
CHFR-217ENST00000540537 GAGE12HA6NDE8 117 aa13.46□□□□□ -0.25
CHFR-217ENST00000540537 ZNF25P17030 456 aaPredicted RBP13.46□□□□□ -0.25
CHFR-217ENST00000540537 ST20Q9HBF5 79 aa13.46□□□□□ -0.25
CHFR-217ENST00000540537 V9GYV3 84 aa13.46□□□□□ -0.25
CHFR-217ENST00000540537 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.45□□□□□ -0.26
CHFR-217ENST00000540537 GAS8-AS1O95177 125 aa13.45□□□□□ -0.26
CHFR-217ENST00000540537 FAM74A3Q4VXF1 159 aa13.45□□□□□ -0.26
CHFR-217ENST00000540537 CFAP161Q6P656 301 aa13.45□□□□□ -0.26
CHFR-217ENST00000540537 RNF185Q96GF1 192 aa13.45□□□□□ -0.26
CHFR-217ENST00000540537 C15orf56Q8N910 161 aa13.44□□□□□ -0.26
CHFR-217ENST00000540537 ISOC2Q96AB3 205 aa13.44□□□□□ -0.26
CHFR-217ENST00000540537 MRAP2Q96G30 205 aa13.44□□□□□ -0.26
CHFR-217ENST00000540537 IGHV3-64A0A075B6Q5 118 aa13.43□□□□□ -0.26
CHFR-217ENST00000540537 PANO1I0J062 215 aa13.43□□□□□ -0.26
CHFR-217ENST00000540537 TSHBP01222 138 aa13.43□□□□□ -0.26
CHFR-217ENST00000540537 SLPIP03973 132 aa13.43□□□□□ -0.26
CHFR-217ENST00000540537 ESDP10768 282 aa13.43□□□□□ -0.26
CHFR-217ENST00000540537 RAB4AP20338 218 aa13.43□□□□□ -0.26
CHFR-217ENST00000540537 RIGQ13278 110 aa13.43□□□□□ -0.26
CHFR-217ENST00000540537 CIRBPQ14011 172 aaKnown RBP13.43□□□□□ -0.26
CHFR-217ENST00000540537 TMEM241Q24JQ0 296 aa13.43□□□□□ -0.26
CHFR-217ENST00000540537 CHCHD10Q8WYQ3 142 aaPredicted RBP13.43□□□□□ -0.26
CHFR-217ENST00000540537 POLR2KP53803 58 aaKnown RBP13.42□□□□□ -0.26
CHFR-217ENST00000540537 RPL37AP61513 92 aaKnown RBP13.42□□□□□ -0.26
CHFR-217ENST00000540537 AMN1Q8IY45 258 aa13.42□□□□□ -0.26
CHFR-217ENST00000540537 NUP35Q8NFH5 326 aa13.42□□□□□ -0.26
CHFR-217ENST00000540537 BTF3L4Q96K17 158 aa13.42□□□□□ -0.26
CHFR-217ENST00000540537 TMEM242Q9NWH2 141 aa13.42□□□□□ -0.26
CHFR-217ENST00000540537 TRBV27A0A0K0K1C4 114 aa13.41□□□□□ -0.26
CHFR-217ENST00000540537 RPS10P46783 165 aaKnown RBP13.41□□□□□ -0.26
CHFR-217ENST00000540537 RPL23P62829 140 aaKnown RBP13.41□□□□□ -0.26
CHFR-217ENST00000540537 OR5A1Q8NGJ0 315 aa13.41□□□□□ -0.26
CHFR-217ENST00000540537 TMEM101Q96IK0 257 aa13.41□□□□□ -0.26
CHFR-217ENST00000540537 NAT8BQ9UHF3 227 aa13.4□□□□□ -0.26
CHFR-217ENST00000540537 FAT3Q8TDW7 4589 aa13.4□□□□□ -0.26
CHFR-217ENST00000540537 LRP1Q07954 4544 aaKnown RBP13.4□□□□□ -0.26
CHFR-217ENST00000540537 NAT8Q9UHE5 227 aa13.39□□□□□ -0.27
CHFR-217ENST00000540537 C9JQL5 133 aa13.38□□□□□ -0.27
CHFR-217ENST00000540537 PPP1R17O96001 155 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 135.2 ms