RNA–Protein interactions for RNA: ENST00000523541.1

CCNC-213, Transcript of cyclin C, humanhuman

TSL 1 (best)

Gene CCNC, Length 1,123 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNC-213ENST00000523541 FAM229AH3BQW9 127 aa11.35□□□□□ -0.59
CCNC-213ENST00000523541 GAGE6Q13070 117 aa11.35□□□□□ -0.59
CCNC-213ENST00000523541 COTL1Q14019 142 aa11.35□□□□□ -0.59
CCNC-213ENST00000523541 GATD1Q8NB37 220 aa11.35□□□□□ -0.59
CCNC-213ENST00000523541 FAT1Q14517 4588 aa11.34□□□□□ -0.59
CCNC-213ENST00000523541 TRAV8-4A0A0B4J246 113 aa11.34□□□□□ -0.59
CCNC-213ENST00000523541 NCR2O95944 276 aa11.34□□□□□ -0.59
CCNC-213ENST00000523541 INAFM2P0DMQ5 153 aa11.34□□□□□ -0.59
CCNC-213ENST00000523541 TMEM241Q24JQ0 296 aa11.34□□□□□ -0.59
CCNC-213ENST00000523541 A0A1B0GUT8 65 aa11.33□□□□□ -0.6
CCNC-213ENST00000523541 PEA15Q15121 130 aa11.33□□□□□ -0.6
CCNC-213ENST00000523541 LINC00269Q8N2A0 174 aa11.33□□□□□ -0.6
CCNC-213ENST00000523541 HIGD1CA8MV81 97 aa11.32□□□□□ -0.6
CCNC-213ENST00000523541 UBE2L6O14933 153 aa11.32□□□□□ -0.6
CCNC-213ENST00000523541 TMEM191AQ9H0A3 160 aa11.32□□□□□ -0.6
CCNC-213ENST00000523541 TRBV6-5A0A0K0K1A5 114 aa11.31□□□□□ -0.6
CCNC-213ENST00000523541 H7C423 109 aa11.31□□□□□ -0.6
CCNC-213ENST00000523541 Q6ZSA8 131 aa11.31□□□□□ -0.6
CCNC-213ENST00000523541 HLA-DQA1P01909 254 aa11.3□□□□□ -0.6
CCNC-213ENST00000523541 AMTP48728 403 aa11.3□□□□□ -0.6
CCNC-213ENST00000523541 REG3AQ06141 175 aa11.3□□□□□ -0.6
CCNC-213ENST00000523541 LINC01620Q4KN68 170 aa11.3□□□□□ -0.6
CCNC-213ENST00000523541 CLPSL2Q6UWE3 100 aa11.3□□□□□ -0.6
CCNC-213ENST00000523541 FAM30AQ9NZY2 134 aa11.3□□□□□ -0.6
CCNC-213ENST00000523541 NAT8Q9UHE5 227 aa11.3□□□□□ -0.6
CCNC-213ENST00000523541 TRAV26-2A0A0B4J265 109 aa11.29□□□□□ -0.6
CCNC-213ENST00000523541 DGAT2L7PQ6IED9 249 aa11.29□□□□□ -0.6
CCNC-213ENST00000523541 C20orf203Q8NBC4 194 aa11.29□□□□□ -0.6
CCNC-213ENST00000523541 CLRN3Q8NCR9 226 aa11.29□□□□□ -0.6
CCNC-213ENST00000523541 ISOC2Q96AB3 205 aa11.29□□□□□ -0.6
CCNC-213ENST00000523541 V9GYV3 84 aa11.29□□□□□ -0.6
CCNC-213ENST00000523541 SDHAF1A6NFY7 115 aa11.28□□□□□ -0.6
CCNC-213ENST00000523541 RPL23P62829 140 aaKnown RBP11.28□□□□□ -0.6
CCNC-213ENST00000523541 RIGQ13278 110 aa11.28□□□□□ -0.6
CCNC-213ENST00000523541 KRTAP26-1Q6PEX3 210 aa11.28□□□□□ -0.6
CCNC-213ENST00000523541 VPS13BQ7Z7G8 4022 aa11.28□□□□□ -0.6
CCNC-213ENST00000523541 I3L3M4 83 aa11.27□□□□□ -0.61
CCNC-213ENST00000523541 PPP1R17O96001 155 aa11.27□□□□□ -0.61
CCNC-213ENST00000523541 RPL39LQ96EH5 51 aaKnown RBP11.27□□□□□ -0.61
CCNC-213ENST00000523541 MRAP2Q96G30 205 aa11.27□□□□□ -0.61
CCNC-213ENST00000523541 NAT8BQ9UHF3 227 aa11.27□□□□□ -0.61
CCNC-213ENST00000523541 IGLV4-60A0A075B6I1 120 aa11.26□□□□□ -0.61
CCNC-213ENST00000523541 USP17L23D6RBM5 183 aa11.26□□□□□ -0.61
CCNC-213ENST00000523541 PMCHP20382 165 aa11.26□□□□□ -0.61
CCNC-213ENST00000523541 NUP35Q8NFH5 326 aa11.26□□□□□ -0.61
CCNC-213ENST00000523541 DEFB104AQ8WTQ1 72 aa11.26□□□□□ -0.61
CCNC-213ENST00000523541 ST20Q9HBF5 79 aa11.26□□□□□ -0.61
CCNC-213ENST00000523541 A0A1B0GW15 77 aa11.25□□□□□ -0.61
CCNC-213ENST00000523541 APCSP02743 223 aa11.25□□□□□ -0.61
CCNC-213ENST00000523541 RAB4AP20338 218 aa11.25□□□□□ -0.61
CCNC-213ENST00000523541 C9JQL5 133 aa11.24□□□□□ -0.61
CCNC-213ENST00000523541 ZNF25P17030 456 aaPredicted RBP11.24□□□□□ -0.61
CCNC-213ENST00000523541 ADIRFQ15847 76 aa11.24□□□□□ -0.61
CCNC-213ENST00000523541 AMMECR1LQ6DCA0 310 aa11.24□□□□□ -0.61
CCNC-213ENST00000523541 TRBV27A0A0K0K1C4 114 aa11.23□□□□□ -0.61
CCNC-213ENST00000523541 SMIM27A0A1W2PRY6 76 aa11.23□□□□□ -0.61
CCNC-213ENST00000523541 POLR2KP53803 58 aaKnown RBP11.23□□□□□ -0.61
CCNC-213ENST00000523541 RNF185Q96GF1 192 aa11.23□□□□□ -0.61
CCNC-213ENST00000523541 SRRM2Q9UQ35 2752 aaKnown RBP11.23□□□□□ -0.61
CCNC-213ENST00000523541 IGLV10-54A0A075B6I4 117 aa11.22□□□□□ -0.61
CCNC-213ENST00000523541 PLA2G1BP04054 148 aaKnown RBP11.22□□□□□ -0.61
CCNC-213ENST00000523541 PRSS1P07477 247 aa11.22□□□□□ -0.61
CCNC-213ENST00000523541 SRSF3P84103 164 aaKnown RBP11.22□□□□□ -0.61
CCNC-213ENST00000523541 LINC00862A6NCI5 91 aa11.21□□□□□ -0.61
CCNC-213ENST00000523541 VCYO14598 125 aa11.21□□□□□ -0.61
CCNC-213ENST00000523541 ESDP10768 282 aa11.21□□□□□ -0.61
CCNC-213ENST00000523541 CFAP161Q6P656 301 aa11.21□□□□□ -0.61
CCNC-213ENST00000523541 LINC00528Q8N1L1 170 aa11.21□□□□□ -0.61
CCNC-213ENST00000523541 C9orf163Q8N9P6 203 aa11.21□□□□□ -0.61
CCNC-213ENST00000523541 CHAC1Q9BUX1 264 aa11.21□□□□□ -0.61
CCNC-213ENST00000523541 S100A8P05109 93 aa11.2□□□□□ -0.62
CCNC-213ENST00000523541 FGF6P10767 208 aa11.2□□□□□ -0.62
CCNC-213ENST00000523541 RAB14P61106 215 aa11.2□□□□□ -0.62
CCNC-213ENST00000523541 AMN1Q8IY45 258 aa11.2□□□□□ -0.62
CCNC-213ENST00000523541 TMEM101Q96IK0 257 aa11.2□□□□□ -0.62
CCNC-213ENST00000523541 BTF3L4Q96K17 158 aa11.2□□□□□ -0.62
CCNC-213ENST00000523541 PPP1R2P9O14990 202 aa11.19□□□□□ -0.62
CCNC-213ENST00000523541 CNBPP62633 177 aaKnown RBP11.19□□□□□ -0.62
CCNC-213ENST00000523541 SMAGPQ0VAQ4 97 aa11.19□□□□□ -0.62
CCNC-213ENST00000523541 FAM104BQ5XKR9 115 aa11.19□□□□□ -0.62
CCNC-213ENST00000523541 RNASEKQ6P5S7 137 aaKnown RBP11.19□□□□□ -0.62
CCNC-213ENST00000523541 SCXQ7RTU7 201 aa11.19□□□□□ -0.62
CCNC-213ENST00000523541 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.18□□□□□ -0.62
CCNC-213ENST00000523541 IGKV2-29A2NJV5 120 aaPredicted RBP11.18□□□□□ -0.62
CCNC-213ENST00000523541 TSHBP01222 138 aa11.18□□□□□ -0.62
CCNC-213ENST00000523541 MRPL52Q86TS9 123 aaKnown RBP11.18□□□□□ -0.62
CCNC-213ENST00000523541 AP5S1Q9NUS5 200 aa11.18□□□□□ -0.62
CCNC-213ENST00000523541 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.17□□□□□ -0.62
CCNC-213ENST00000523541 IGKV3OR2-268A0A0C4DH90 116 aa11.17□□□□□ -0.62
CCNC-213ENST00000523541 TCAPO15273 167 aa11.17□□□□□ -0.62
CCNC-213ENST00000523541 GAS8-AS1O95177 125 aa11.17□□□□□ -0.62
CCNC-213ENST00000523541 OR5A1Q8NGJ0 315 aa11.17□□□□□ -0.62
CCNC-213ENST00000523541 C20orf78Q9BR46 151 aa11.17□□□□□ -0.62
CCNC-213ENST00000523541 TRBV24-1A0A075B6N3 115 aa11.16□□□□□ -0.62
CCNC-213ENST00000523541 F8W036 122 aa11.16□□□□□ -0.62
CCNC-213ENST00000523541 RPS10P46783 165 aaKnown RBP11.16□□□□□ -0.62
CCNC-213ENST00000523541 SUMO2P61956 95 aaKnown RBP11.16□□□□□ -0.62
CCNC-213ENST00000523541 KIR2DL4Q99706 377 aa11.16□□□□□ -0.62
CCNC-213ENST00000523541 hDV102S1A0JD36 115 aa11.15□□□□□ -0.62
CCNC-213ENST00000523541 C7orf77A4D0Y5 90 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms