RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 RASL11AQ6T310 242 aa12.48□□□□□ -0.41
SQSTM1-215ENST00000514093 PGLYRP4Q96LB8 373 aa12.48□□□□□ -0.41
SQSTM1-215ENST00000514093 SCO2A0A1W2PP80 73 aa12.47□□□□□ -0.41
SQSTM1-215ENST00000514093 ALG5Q9Y673 324 aa12.47□□□□□ -0.41
SQSTM1-215ENST00000514093 COTL1Q14019 142 aa12.46□□□□□ -0.41
SQSTM1-215ENST00000514093 NIT2Q9NQR4 276 aa12.46□□□□□ -0.41
SQSTM1-215ENST00000514093 S100A9P06702 114 aaKnown RBP12.45□□□□□ -0.42
SQSTM1-215ENST00000514093 FOXI1Q12951 378 aa12.45□□□□□ -0.42
SQSTM1-215ENST00000514093 FER1L6-AS1Q8NA97 138 aa12.43□□□□□ -0.42
SQSTM1-215ENST00000514093 CARD19Q96LW7 228 aa12.43□□□□□ -0.42
SQSTM1-215ENST00000514093 A0A1B0GV50 99 aa12.42□□□□□ -0.42
SQSTM1-215ENST00000514093 IGLC6P0CF74 106 aa12.42□□□□□ -0.42
SQSTM1-215ENST00000514093 DEFA1P59665 94 aa12.42□□□□□ -0.42
SQSTM1-215ENST00000514093 AMMECR1LQ6DCA0 310 aa12.42□□□□□ -0.42
SQSTM1-215ENST00000514093 RNASEKQ6P5S7 137 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-215ENST00000514093 PRR26Q8N8Z3 221 aa12.42□□□□□ -0.42
SQSTM1-215ENST00000514093 FXYD6-FXYD2A0A087WZ82 144 aa12.41□□□□□ -0.42
SQSTM1-215ENST00000514093 XCL1P47992 114 aa12.41□□□□□ -0.42
SQSTM1-215ENST00000514093 ZNF664Q8N3J9 261 aa12.41□□□□□ -0.42
SQSTM1-215ENST00000514093 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-215ENST00000514093 A0A1W2PNN7 141 aa12.4□□□□□ -0.42
SQSTM1-215ENST00000514093 IGKV2-29A2NJV5 120 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-215ENST00000514093 GAGE2BQ13066 116 aa12.4□□□□□ -0.42
SQSTM1-215ENST00000514093 TMUB2Q71RG4 321 aa12.4□□□□□ -0.42
SQSTM1-215ENST00000514093 PSORS1C2Q9UIG4 136 aa12.4□□□□□ -0.42
SQSTM1-215ENST00000514093 PKIGQ9Y2B9 76 aa12.4□□□□□ -0.42
SQSTM1-215ENST00000514093 PTTG1IPP53801 180 aa12.39□□□□□ -0.43
SQSTM1-215ENST00000514093 CACNG7P62955 275 aa12.39□□□□□ -0.43
SQSTM1-215ENST00000514093 Q6ZNX1 250 aa12.39□□□□□ -0.43
SQSTM1-215ENST00000514093 MED28Q9H204 178 aa12.39□□□□□ -0.43
SQSTM1-215ENST00000514093 TRAV26-2A0A0B4J265 109 aa12.38□□□□□ -0.43
SQSTM1-215ENST00000514093 MT-ND6P03923 174 aa12.38□□□□□ -0.43
SQSTM1-215ENST00000514093 OR2D3Q8NGH3 330 aa12.38□□□□□ -0.43
SQSTM1-215ENST00000514093 IGHV1-58A0A0C4DH39 117 aa12.37□□□□□ -0.43
SQSTM1-215ENST00000514093 KRTAP9-6A0A140TA67 174 aa12.37□□□□□ -0.43
SQSTM1-215ENST00000514093 PFDN1O60925 122 aa12.37□□□□□ -0.43
SQSTM1-215ENST00000514093 NTF3P20783 257 aa12.37□□□□□ -0.43
SQSTM1-215ENST00000514093 SYCNQ0VAF6 134 aa12.37□□□□□ -0.43
SQSTM1-215ENST00000514093 SFT2D1Q8WV19 159 aa12.37□□□□□ -0.43
SQSTM1-215ENST00000514093 FAT4Q6V0I7 4981 aa12.37□□□□□ -0.43
SQSTM1-215ENST00000514093 CCL25O15444 150 aa12.36□□□□□ -0.43
SQSTM1-215ENST00000514093 FGF6P10767 208 aa12.36□□□□□ -0.43
SQSTM1-215ENST00000514093 RPL35P42766 123 aaKnown RBP12.36□□□□□ -0.43
SQSTM1-215ENST00000514093 C1orf137Q5JT78 98 aa12.36□□□□□ -0.43
SQSTM1-215ENST00000514093 CYTL1Q9NRR1 136 aa12.36□□□□□ -0.43
SQSTM1-215ENST00000514093 TRGC1P0CF51 173 aa12.35□□□□□ -0.43
SQSTM1-215ENST00000514093 LYZL1Q6UWQ5 148 aa12.35□□□□□ -0.43
SQSTM1-215ENST00000514093 GATD1Q8NB37 220 aa12.35□□□□□ -0.43
SQSTM1-215ENST00000514093 ZNF561-AS1K7EIQ3 104 aa12.34□□□□□ -0.43
SQSTM1-215ENST00000514093 GIPP09681 153 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-215ENST00000514093 RPS20P60866 119 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-215ENST00000514093 PRR4Q16378 134 aa12.34□□□□□ -0.43
SQSTM1-215ENST00000514093 OR5A1Q8NGJ0 315 aa12.34□□□□□ -0.43
SQSTM1-215ENST00000514093 A0A0U1RQV1 116 aa12.33□□□□□ -0.44
SQSTM1-215ENST00000514093 LINC00959A0A1B0GUT2 108 aa12.33□□□□□ -0.44
SQSTM1-215ENST00000514093 BCL2P10415 239 aa12.33□□□□□ -0.44
SQSTM1-215ENST00000514093 PHF5AQ7RTV0 110 aaKnown RBP12.33□□□□□ -0.44
SQSTM1-215ENST00000514093 FAM213BQ8TBF2 198 aa12.33□□□□□ -0.44
SQSTM1-215ENST00000514093 LOC107984640A0A0U1RRK4 108 aa12.32□□□□□ -0.44
SQSTM1-215ENST00000514093 F2Z2F3 143 aa12.32□□□□□ -0.44
SQSTM1-215ENST00000514093 C9orf116Q5BN46 136 aaPredicted RBP12.32□□□□□ -0.44
SQSTM1-215ENST00000514093 KCNRGQ8N5I3 272 aa12.32□□□□□ -0.44
SQSTM1-215ENST00000514093 MBD3L1Q8WWY6 194 aa12.32□□□□□ -0.44
SQSTM1-215ENST00000514093 RPL39LQ96EH5 51 aaKnown RBP12.32□□□□□ -0.44
SQSTM1-215ENST00000514093 C19orf71A6NCJ1 209 aa12.31□□□□□ -0.44
SQSTM1-215ENST00000514093 APCSP02743 223 aa12.31□□□□□ -0.44
SQSTM1-215ENST00000514093 CAMPP49913 170 aa12.31□□□□□ -0.44
SQSTM1-215ENST00000514093 CENPWQ5EE01 88 aa12.31□□□□□ -0.44
SQSTM1-215ENST00000514093 H7C423 109 aa12.3□□□□□ -0.44
SQSTM1-215ENST00000514093 IGLV4-69A0A075B6H9 119 aa12.29□□□□□ -0.44
SQSTM1-215ENST00000514093 NCR2O95944 276 aa12.29□□□□□ -0.44
SQSTM1-215ENST00000514093 IFNA1P01562 189 aa12.29□□□□□ -0.44
SQSTM1-215ENST00000514093 TWIST1Q15672 202 aa12.29□□□□□ -0.44
SQSTM1-215ENST00000514093 DIRC1Q969H9 104 aa12.29□□□□□ -0.44
SQSTM1-215ENST00000514093 ARPC5O15511 151 aa12.28□□□□□ -0.44
SQSTM1-215ENST00000514093 IGLV7-43P04211 117 aa12.28□□□□□ -0.44
SQSTM1-215ENST00000514093 TMEM101Q96IK0 257 aa12.28□□□□□ -0.44
SQSTM1-215ENST00000514093 BTF3L4Q96K17 158 aa12.28□□□□□ -0.44
SQSTM1-215ENST00000514093 XKRY2A2RUG3 117 aa12.27□□□□□ -0.45
SQSTM1-215ENST00000514093 RAB19A4D1S5 217 aa12.27□□□□□ -0.45
SQSTM1-215ENST00000514093 ZNF25P17030 456 aaPredicted RBP12.27□□□□□ -0.45
SQSTM1-215ENST00000514093 SS18Q15532 418 aa12.27□□□□□ -0.45
SQSTM1-215ENST00000514093 ISOC2Q96AB3 205 aa12.27□□□□□ -0.45
SQSTM1-215ENST00000514093 G3V3Q6 166 aa12.26□□□□□ -0.45
SQSTM1-215ENST00000514093 LCE2AQ5TA79 106 aaPredicted RBP12.26□□□□□ -0.45
SQSTM1-215ENST00000514093 CD164L2Q6UWJ8 174 aa12.26□□□□□ -0.45
SQSTM1-215ENST00000514093 C9orf62Q8N4C0 152 aa12.26□□□□□ -0.45
SQSTM1-215ENST00000514093 NUP35Q8NFH5 326 aa12.26□□□□□ -0.45
SQSTM1-215ENST00000514093 SDHAF1A6NFY7 115 aa12.25□□□□□ -0.45
SQSTM1-215ENST00000514093 FOXA3P55318 350 aaPredicted RBP12.25□□□□□ -0.45
SQSTM1-215ENST00000514093 RPL18AQ02543 176 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-215ENST00000514093 H0Y9J4 135 aa12.24□□□□□ -0.45
SQSTM1-215ENST00000514093 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-215ENST00000514093 APOMO95445 188 aa12.24□□□□□ -0.45
SQSTM1-215ENST00000514093 MEF2BQ02080 365 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-215ENST00000514093 C11orf52Q96A22 123 aa12.24□□□□□ -0.45
SQSTM1-215ENST00000514093 CAMK2N2Q96S95 79 aa12.24□□□□□ -0.45
SQSTM1-215ENST00000514093 OPRPNQ99935 248 aaPredicted RBP12.24□□□□□ -0.45
SQSTM1-215ENST00000514093 H2AFB1P0C5Y9 115 aa12.23□□□□□ -0.45
SQSTM1-215ENST00000514093 PMCHP20382 165 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 182.8 ms