RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 MAP1LC3AQ9H492 121 aa10.23□□□□□ -0.77
NUP54-213ENST00000513352 LAMTOR2Q9Y2Q5 125 aa10.23□□□□□ -0.77
NUP54-213ENST00000513352 TRBV27A0A0K0K1C4 114 aa10.22□□□□□ -0.77
NUP54-213ENST00000513352 UBE2L6O14933 153 aa10.22□□□□□ -0.77
NUP54-213ENST00000513352 IGHV3-30P01768 117 aa10.22□□□□□ -0.77
NUP54-213ENST00000513352 IGHV3-33P01772 117 aa10.22□□□□□ -0.77
NUP54-213ENST00000513352 IGHV3-30-3P0DP02 117 aa10.22□□□□□ -0.77
NUP54-213ENST00000513352 IGHV3-30-5P0DP03 117 aa10.22□□□□□ -0.77
NUP54-213ENST00000513352 POLR2KP53803 58 aaKnown RBP10.22□□□□□ -0.77
NUP54-213ENST00000513352 TSHBP01222 138 aa10.21□□□□□ -0.77
NUP54-213ENST00000513352 GAGE6Q13070 117 aa10.21□□□□□ -0.77
NUP54-213ENST00000513352 IQCJQ1A5X6 159 aa10.21□□□□□ -0.77
NUP54-213ENST00000513352 TTC32Q5I0X7 151 aa10.21□□□□□ -0.77
NUP54-213ENST00000513352 A0A087WX48 190 aa10.2□□□□□ -0.78
NUP54-213ENST00000513352 NBDYA0A0U1RRE5 68 aa10.2□□□□□ -0.78
NUP54-213ENST00000513352 TRAV9-2A0A087WT02 112 aa10.19□□□□□ -0.78
NUP54-213ENST00000513352 DNAH10OSP0CZ25 163 aa10.19□□□□□ -0.78
NUP54-213ENST00000513352 PKIAP61925 76 aa10.19□□□□□ -0.78
NUP54-213ENST00000513352 RPL32P62910 135 aaKnown RBP10.19□□□□□ -0.78
NUP54-213ENST00000513352 LINC01556Q5JQF7 62 aa10.19□□□□□ -0.78
NUP54-213ENST00000513352 NIT1Q86X76 327 aa10.19□□□□□ -0.78
NUP54-213ENST00000513352 Q8N3U1 123 aa10.19□□□□□ -0.78
NUP54-213ENST00000513352 ALKBH7Q9BT30 221 aaPredicted RBP10.19□□□□□ -0.78
NUP54-213ENST00000513352 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.18□□□□□ -0.78
NUP54-213ENST00000513352 IGKV2-29A2NJV5 120 aaPredicted RBP10.18□□□□□ -0.78
NUP54-213ENST00000513352 TCAPO15273 167 aa10.18□□□□□ -0.78
NUP54-213ENST00000513352 RAB5AP20339 215 aa10.18□□□□□ -0.78
NUP54-213ENST00000513352 COLCA2A8K830 154 aa10.17□□□□□ -0.78
NUP54-213ENST00000513352 AMMECR1LQ6DCA0 310 aa10.17□□□□□ -0.78
NUP54-213ENST00000513352 PRSS3P2Q8NHM4 247 aa10.17□□□□□ -0.78
NUP54-213ENST00000513352 LYSTQ99698 3801 aa10.17□□□□□ -0.78
NUP54-213ENST00000513352 CHCHD7Q9BUK0 85 aa10.17□□□□□ -0.78
NUP54-213ENST00000513352 NXT2Q9NPJ8 142 aaKnown RBP10.17□□□□□ -0.78
NUP54-213ENST00000513352 MPV17L2Q567V2 206 aa10.16□□□□□ -0.78
NUP54-213ENST00000513352 C10orf126Q8N4M7 172 aa10.16□□□□□ -0.78
NUP54-213ENST00000513352 Q8N8P6 123 aa10.16□□□□□ -0.78
NUP54-213ENST00000513352 PRSS47A8MTI9 375 aa10.15□□□□□ -0.78
NUP54-213ENST00000513352 ANGP03950 147 aaKnown RBP10.15□□□□□ -0.78
NUP54-213ENST00000513352 TRGC2P03986 189 aa10.15□□□□□ -0.78
NUP54-213ENST00000513352 IFI27P40305 119 aaPredicted RBP10.15□□□□□ -0.78
NUP54-213ENST00000513352 RNASEKQ6P5S7 137 aaKnown RBP10.15□□□□□ -0.78
NUP54-213ENST00000513352 Q8N976 141 aa10.15□□□□□ -0.78
NUP54-213ENST00000513352 KRTAP1-5Q9BYS1 174 aa10.15□□□□□ -0.78
NUP54-213ENST00000513352 DNAH1Q9P2D7 4330 aa10.15□□□□□ -0.79
NUP54-213ENST00000513352 VPS13DQ5THJ4 4388 aa10.14□□□□□ -0.79
NUP54-213ENST00000513352 RBX1P62877 108 aa10.14□□□□□ -0.79
NUP54-213ENST00000513352 Q6ZR54 194 aa10.14□□□□□ -0.79
NUP54-213ENST00000513352 FA2HQ7L5A8 372 aa10.14□□□□□ -0.79
NUP54-213ENST00000513352 TMEM18Q96B42 140 aa10.14□□□□□ -0.79
NUP54-213ENST00000513352 Q9HAA7 133 aa10.14□□□□□ -0.79
NUP54-213ENST00000513352 KLK12Q9UKR0 248 aa10.14□□□□□ -0.79
NUP54-213ENST00000513352 FGF6P10767 208 aa10.13□□□□□ -0.79
NUP54-213ENST00000513352 ESDP10768 282 aa10.13□□□□□ -0.79
NUP54-213ENST00000513352 TMEM101Q96IK0 257 aa10.13□□□□□ -0.79
NUP54-213ENST00000513352 H7C423 109 aa10.12□□□□□ -0.79
NUP54-213ENST00000513352 K7EP13 123 aa10.12□□□□□ -0.79
NUP54-213ENST00000513352 CRPP02741 224 aa10.12□□□□□ -0.79
NUP54-213ENST00000513352 LAGE3Q14657 143 aa10.12□□□□□ -0.79
NUP54-213ENST00000513352 C1orf134Q5TEV5 83 aa10.12□□□□□ -0.79
NUP54-213ENST00000513352 CLPSL2Q6UWE3 100 aa10.12□□□□□ -0.79
NUP54-213ENST00000513352 C18orf32Q8TCD1 76 aa10.12□□□□□ -0.79
NUP54-213ENST00000513352 IGLV4-60A0A075B6I1 120 aa10.11□□□□□ -0.79
NUP54-213ENST00000513352 RPL39P62891 51 aaKnown RBP10.11□□□□□ -0.79
NUP54-213ENST00000513352 SMAGPQ0VAQ4 97 aa10.11□□□□□ -0.79
NUP54-213ENST00000513352 ORMDL2Q53FV1 153 aa10.11□□□□□ -0.79
NUP54-213ENST00000513352 DGAT2L7PQ6IED9 249 aa10.11□□□□□ -0.79
NUP54-213ENST00000513352 C20orf203Q8NBC4 194 aa10.11□□□□□ -0.79
NUP54-213ENST00000513352 UBE2WQ96B02 151 aa10.11□□□□□ -0.79
NUP54-213ENST00000513352 IBA57-AS1B1ANH7 110 aa10.1□□□□□ -0.79
NUP54-213ENST00000513352 BTF3P20290 206 aaKnown RBP10.1□□□□□ -0.79
NUP54-213ENST00000513352 C6orf223Q8N319 242 aa10.1□□□□□ -0.79
NUP54-213ENST00000513352 OR5A1Q8NGJ0 315 aa10.1□□□□□ -0.79
NUP54-213ENST00000513352 IGKV3OR2-268A0A0C4DH90 116 aa10.09□□□□□ -0.79
NUP54-213ENST00000513352 A0A1B0GUV1 79 aa10.09□□□□□ -0.79
NUP54-213ENST00000513352 K7EMI3 77 aa10.09□□□□□ -0.79
NUP54-213ENST00000513352 ZNF25P17030 456 aaPredicted RBP10.09□□□□□ -0.79
NUP54-213ENST00000513352 LINC00269Q8N2A0 174 aa10.09□□□□□ -0.79
NUP54-213ENST00000513352 KMT2CQ8NEZ4 4911 aaKnown RBP10.09□□□□□ -0.79
NUP54-213ENST00000513352 RAB5BP61020 215 aa10.08□□□□□ -0.8
NUP54-213ENST00000513352 MRPL52Q86TS9 123 aaKnown RBP10.08□□□□□ -0.8
NUP54-213ENST00000513352 BAGE3Q86Y29 109 aa10.08□□□□□ -0.8
NUP54-213ENST00000513352 CYSLTR1Q9Y271 337 aa10.08□□□□□ -0.8
NUP54-213ENST00000513352 TRAV8-3A0A0A6YYJ7 113 aa10.07□□□□□ -0.8
NUP54-213ENST00000513352 Q0VG73 95 aa10.07□□□□□ -0.8
NUP54-213ENST00000513352 C2orf66Q6UXQ4 117 aa10.07□□□□□ -0.8
NUP54-213ENST00000513352 NFE4Q86UQ8 179 aa10.07□□□□□ -0.8
NUP54-213ENST00000513352 AP5S1Q9NUS5 200 aa10.07□□□□□ -0.8
NUP54-213ENST00000513352 UBE2D4Q9Y2X8 147 aa10.07□□□□□ -0.8
NUP54-213ENST00000513352 SACSQ9NZJ4 4579 aa10.07□□□□□ -0.8
NUP54-213ENST00000513352 LINC00614P0C842 121 aa10.06□□□□□ -0.8
NUP54-213ENST00000513352 G0S2P27469 103 aa10.06□□□□□ -0.8
NUP54-213ENST00000513352 REG3AQ06141 175 aa10.06□□□□□ -0.8
NUP54-213ENST00000513352 RNASE13Q5GAN3 156 aaKnown RBP10.06□□□□□ -0.8
NUP54-213ENST00000513352 RMI2Q96E14 147 aa10.06□□□□□ -0.8
NUP54-213ENST00000513352 SPANXA1Q9NS26 97 aa10.06□□□□□ -0.8
NUP54-213ENST00000513352 DNAH6Q9C0G6 4158 aa10.06□□□□□ -0.8
NUP54-213ENST00000513352 IGKV2D-24A0A075B6R9 120 aa10.05□□□□□ -0.8
NUP54-213ENST00000513352 PSCAO43653 123 aa10.05□□□□□ -0.8
NUP54-213ENST00000513352 ENHOQ6UWT2 76 aa10.05□□□□□ -0.8
NUP54-213ENST00000513352 Q6ZUT4 128 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms