RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 DNAH10OSP0CZ25 163 aa20.17■□□□□ 0.82
LIMCH1-211ENST00000509638 VCYO14598 125 aa20.17■□□□□ 0.82
LIMCH1-211ENST00000509638 TSHBP01222 138 aa20.17■□□□□ 0.82
LIMCH1-211ENST00000509638 AMTP48728 403 aa20.17■□□□□ 0.82
LIMCH1-211ENST00000509638 CHCHD5Q9BSY4 110 aa20.17■□□□□ 0.82
LIMCH1-211ENST00000509638 RPL32P62910 135 aaKnown RBP20.16■□□□□ 0.82
LIMCH1-211ENST00000509638 NBDYA0A0U1RRE5 68 aa20.15■□□□□ 0.82
LIMCH1-211ENST00000509638 M0R2N4 97 aa20.15■□□□□ 0.82
LIMCH1-211ENST00000509638 Q8N3U1 123 aa20.15■□□□□ 0.82
LIMCH1-211ENST00000509638 RYR3Q15413 4870 aa20.14■□□□□ 0.82
LIMCH1-211ENST00000509638 LINC01556Q5JQF7 62 aa20.14■□□□□ 0.81
LIMCH1-211ENST00000509638 NIT1Q86X76 327 aa20.14■□□□□ 0.81
LIMCH1-211ENST00000509638 TMEM243Q9BU79 118 aa20.14■□□□□ 0.81
LIMCH1-211ENST00000509638 MAP1LC3AQ9H492 121 aa20.14■□□□□ 0.81
LIMCH1-211ENST00000509638 KIR2DL4Q99706 377 aa20.13■□□□□ 0.81
LIMCH1-211ENST00000509638 KRTAP1-5Q9BYS1 174 aa20.13■□□□□ 0.81
LIMCH1-211ENST00000509638 TTC32Q5I0X7 151 aa20.12■□□□□ 0.81
LIMCH1-211ENST00000509638 IGHV3-30P01768 117 aa20.12■□□□□ 0.81
LIMCH1-211ENST00000509638 IGHV3-33P01772 117 aa20.12■□□□□ 0.81
LIMCH1-211ENST00000509638 IGHV3-30-3P0DP02 117 aa20.12■□□□□ 0.81
LIMCH1-211ENST00000509638 IGHV3-30-5P0DP03 117 aa20.12■□□□□ 0.81
LIMCH1-211ENST00000509638 FCER1GP30273 86 aa20.12■□□□□ 0.81
LIMCH1-211ENST00000509638 ALKBH7Q9BT30 221 aaPredicted RBP20.12■□□□□ 0.81
LIMCH1-211ENST00000509638 LOC389332A0A1B0GUA5 103 aa20.11■□□□□ 0.81
LIMCH1-211ENST00000509638 GAGE6Q13070 117 aa20.1■□□□□ 0.81
LIMCH1-211ENST00000509638 A0A087WX48 190 aa20.09■□□□□ 0.81
LIMCH1-211ENST00000509638 COLCA2A8K830 154 aa20.09■□□□□ 0.81
LIMCH1-211ENST00000509638 Q6ZR54 194 aa20.09■□□□□ 0.81
LIMCH1-211ENST00000509638 TMEM262E9PQX1 116 aa20.08■□□□□ 0.81
LIMCH1-211ENST00000509638 MPV17L2Q567V2 206 aa20.08■□□□□ 0.81
LIMCH1-211ENST00000509638 CHCHD7Q9BUK0 85 aa20.08■□□□□ 0.81
LIMCH1-211ENST00000509638 PRSS47A8MTI9 375 aa20.08■□□□□ 0.8
LIMCH1-211ENST00000509638 UBE2L6O14933 153 aa20.08■□□□□ 0.8
LIMCH1-211ENST00000509638 PKIAP61925 76 aa20.07■□□□□ 0.8
LIMCH1-211ENST00000509638 IGKV2D-29A0A075B6S2 120 aaPredicted RBP20.06■□□□□ 0.8
LIMCH1-211ENST00000509638 TRAV9-2A0A087WT02 112 aa20.06■□□□□ 0.8
LIMCH1-211ENST00000509638 IGKV2-29A2NJV5 120 aaPredicted RBP20.06■□□□□ 0.8
LIMCH1-211ENST00000509638 TCAPO15273 167 aa20.05■□□□□ 0.8
LIMCH1-211ENST00000509638 RAB5AP20339 215 aa20.05■□□□□ 0.8
LIMCH1-211ENST00000509638 C10orf126Q8N4M7 172 aa20.05■□□□□ 0.8
LIMCH1-211ENST00000509638 K7EP13 123 aa20.04■□□□□ 0.8
LIMCH1-211ENST00000509638 ESDP10768 282 aa20.04■□□□□ 0.8
LIMCH1-211ENST00000509638 Q8N8P6 123 aa20.04■□□□□ 0.8
LIMCH1-211ENST00000509638 Q8N976 141 aa20.04■□□□□ 0.8
LIMCH1-211ENST00000509638 NXT2Q9NPJ8 142 aaKnown RBP20.03■□□□□ 0.8
LIMCH1-211ENST00000509638 IFI27P40305 119 aaPredicted RBP20.02■□□□□ 0.8
LIMCH1-211ENST00000509638 RBX1P62877 108 aa20.02■□□□□ 0.8
LIMCH1-211ENST00000509638 TRGC2P03986 189 aa20■□□□□ 0.79
LIMCH1-211ENST00000509638 DNAH2Q9P225 4427 aa20■□□□□ 0.79
LIMCH1-211ENST00000509638 H7C423 109 aa20■□□□□ 0.79
LIMCH1-211ENST00000509638 KLK12Q9UKR0 248 aa19.99■□□□□ 0.79
LIMCH1-211ENST00000509638 FGF6P10767 208 aa19.98■□□□□ 0.79
LIMCH1-211ENST00000509638 AMMECR1LQ6DCA0 310 aa19.98■□□□□ 0.79
LIMCH1-211ENST00000509638 C18orf32Q8TCD1 76 aa19.98■□□□□ 0.79
LIMCH1-211ENST00000509638 FRAS1Q86XX4 4008 aa19.98■□□□□ 0.79
LIMCH1-211ENST00000509638 ANGP03950 147 aaKnown RBP19.97■□□□□ 0.79
LIMCH1-211ENST00000509638 PRSS3P2Q8NHM4 247 aa19.97■□□□□ 0.79
LIMCH1-211ENST00000509638 IBA57-AS1B1ANH7 110 aa19.96■□□□□ 0.79
LIMCH1-211ENST00000509638 LAGE3Q14657 143 aa19.96■□□□□ 0.79
LIMCH1-211ENST00000509638 RNASEKQ6P5S7 137 aaKnown RBP19.96■□□□□ 0.79
LIMCH1-211ENST00000509638 C20orf203Q8NBC4 194 aa19.96■□□□□ 0.79
LIMCH1-211ENST00000509638 IGLV4-60A0A075B6I1 120 aa19.95■□□□□ 0.78
LIMCH1-211ENST00000509638 A0A1B0GUV1 79 aa19.95■□□□□ 0.78
LIMCH1-211ENST00000509638 C6orf223Q8N319 242 aa19.95■□□□□ 0.78
LIMCH1-211ENST00000509638 K7EMI3 77 aa19.94■□□□□ 0.78
LIMCH1-211ENST00000509638 C1orf134Q5TEV5 83 aa19.94■□□□□ 0.78
LIMCH1-211ENST00000509638 Q9HAA7 133 aa19.94■□□□□ 0.78
LIMCH1-211ENST00000509638 ZNF25P17030 456 aaPredicted RBP19.93■□□□□ 0.78
LIMCH1-211ENST00000509638 RPL39P62891 51 aaKnown RBP19.93■□□□□ 0.78
LIMCH1-211ENST00000509638 ORMDL2Q53FV1 153 aa19.93■□□□□ 0.78
LIMCH1-211ENST00000509638 TMEM18Q96B42 140 aa19.93■□□□□ 0.78
LIMCH1-211ENST00000509638 DNAH10Q8IVF4 4471 aa19.93■□□□□ 0.78
LIMCH1-211ENST00000509638 MRPL52Q86TS9 123 aaKnown RBP19.92■□□□□ 0.78
LIMCH1-211ENST00000509638 CLPSL2Q6UWE3 100 aa19.91■□□□□ 0.78
LIMCH1-211ENST00000509638 FA2HQ7L5A8 372 aa19.91■□□□□ 0.78
LIMCH1-211ENST00000509638 UBE2WQ96B02 151 aa19.91■□□□□ 0.78
LIMCH1-211ENST00000509638 LINC00269Q8N2A0 174 aa19.91■□□□□ 0.78
LIMCH1-211ENST00000509638 UBE2D4Q9Y2X8 147 aa19.91■□□□□ 0.78
LIMCH1-211ENST00000509638 CRPP02741 224 aa19.9■□□□□ 0.78
LIMCH1-211ENST00000509638 BTF3P20290 206 aaKnown RBP19.9■□□□□ 0.78
LIMCH1-211ENST00000509638 TMEM101Q96IK0 257 aa19.9■□□□□ 0.78
LIMCH1-211ENST00000509638 OR5A1Q8NGJ0 315 aa19.89■□□□□ 0.77
LIMCH1-211ENST00000509638 LINC01546A6NGU7 62 aa19.88■□□□□ 0.77
LIMCH1-211ENST00000509638 SMAGPQ0VAQ4 97 aa19.88■□□□□ 0.77
LIMCH1-211ENST00000509638 TRAV8-3A0A0A6YYJ7 113 aa19.87■□□□□ 0.77
LIMCH1-211ENST00000509638 PRR34Q9NV39 138 aa19.87■□□□□ 0.77
LIMCH1-211ENST00000509638 ENHOQ6UWT2 76 aa19.87■□□□□ 0.77
LIMCH1-211ENST00000509638 DGAT2L7PQ6IED9 249 aa19.86■□□□□ 0.77
LIMCH1-211ENST00000509638 C2orf66Q6UXQ4 117 aa19.86■□□□□ 0.77
LIMCH1-211ENST00000509638 NFE4Q86UQ8 179 aa19.86■□□□□ 0.77
LIMCH1-211ENST00000509638 URB1-AS1Q96HZ7 61 aa19.86■□□□□ 0.77
LIMCH1-211ENST00000509638 AP5S1Q9NUS5 200 aa19.86■□□□□ 0.77
LIMCH1-211ENST00000509638 CYSLTR1Q9Y271 337 aa19.86■□□□□ 0.77
LIMCH1-211ENST00000509638 RTL8CO15255 209 aa19.85■□□□□ 0.77
LIMCH1-211ENST00000509638 REG3AQ06141 175 aa19.85■□□□□ 0.77
LIMCH1-211ENST00000509638 TIMM21Q9BVV7 248 aa19.85■□□□□ 0.77
LIMCH1-211ENST00000509638 Q0VG73 95 aa19.84■□□□□ 0.77
LIMCH1-211ENST00000509638 SPANXA1Q9NS26 97 aa19.84■□□□□ 0.77
LIMCH1-211ENST00000509638 CSDC2Q9Y534 153 aaKnown RBP19.84■□□□□ 0.77
LIMCH1-211ENST00000509638 Q6ZRN7 208 aaPredicted RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms