RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 RYR1P21817 5038 aa12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 TRBV6-4A0A1B0GX49 114 aa12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 PRSS47A8MTI9 375 aa12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 SIVA1O15304 175 aa12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 SUMO2P61956 95 aaKnown RBP12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 RPL32P62910 135 aaKnown RBP12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 RHOHQ15669 191 aa12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 MRPL23Q16540 153 aaKnown RBP12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 IQCJQ1A5X6 159 aa12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 Q6ZSN1 163 aa12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 BAGE3Q86Y29 109 aa12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 DNAJC30Q96LL9 226 aa12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 NIT2Q9NQR4 276 aa12.35□□□□□ -0.43
SQSTM1-209ENST00000504627 PMCHP20382 165 aa12.34□□□□□ -0.43
SQSTM1-209ENST00000504627 SMIM2Q9BVW6 85 aa12.34□□□□□ -0.43
SQSTM1-209ENST00000504627 ST20Q9HBF5 79 aa12.34□□□□□ -0.43
SQSTM1-209ENST00000504627 NXT2Q9NPJ8 142 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-209ENST00000504627 BTF3P20290 206 aaKnown RBP12.33□□□□□ -0.44
SQSTM1-209ENST00000504627 NDUFA6P56556 154 aa12.33□□□□□ -0.44
SQSTM1-209ENST00000504627 NEGR1Q7Z3B1 354 aa12.33□□□□□ -0.44
SQSTM1-209ENST00000504627 SPATA12Q7Z6I5 190 aa12.32□□□□□ -0.44
SQSTM1-209ENST00000504627 SLC25A29Q8N8R3 303 aa12.32□□□□□ -0.44
SQSTM1-209ENST00000504627 NEXN-AS1Q8NBZ9 246 aa12.32□□□□□ -0.44
SQSTM1-209ENST00000504627 TMEM70Q9BUB7 260 aa12.32□□□□□ -0.44
SQSTM1-209ENST00000504627 LYPD5Q6UWN5 251 aa12.31□□□□□ -0.44
SQSTM1-209ENST00000504627 Q8N8P6 123 aa12.31□□□□□ -0.44
SQSTM1-209ENST00000504627 CHCHD1Q96BP2 118 aaKnown RBP12.31□□□□□ -0.44
SQSTM1-209ENST00000504627 PRADC1Q9BSG0 188 aa12.31□□□□□ -0.44
SQSTM1-209ENST00000504627 LOC389332A0A1B0GUA5 103 aa12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 SDHAF1A6NFY7 115 aa12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 SERF1AO75920 110 aa12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 ESDP10768 282 aa12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 LINC00310P59036 64 aa12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 RPL36AP83881 106 aaKnown RBP12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 RNASEKQ6P5S7 137 aaKnown RBP12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 FA2HQ7L5A8 372 aa12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 PRSS3P2Q8NHM4 247 aa12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 RPL36ALQ969Q0 106 aaKnown RBP12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 TNFRSF18Q9Y5U5 241 aa12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 LRP1BQ9NZR2 4599 aa12.3□□□□□ -0.44
SQSTM1-209ENST00000504627 TRBV27A0A0K0K1C4 114 aa12.29□□□□□ -0.44
SQSTM1-209ENST00000504627 K7EMI3 77 aa12.29□□□□□ -0.44
SQSTM1-209ENST00000504627 GYPEP15421 78 aa12.29□□□□□ -0.44
SQSTM1-209ENST00000504627 IFI27P40305 119 aaPredicted RBP12.29□□□□□ -0.44
SQSTM1-209ENST00000504627 POLR2KP53803 58 aaKnown RBP12.29□□□□□ -0.44
SQSTM1-209ENST00000504627 AP5S1Q9NUS5 200 aa12.29□□□□□ -0.44
SQSTM1-209ENST00000504627 TRBV7-3A0A075B6L6 115 aa12.28□□□□□ -0.44
SQSTM1-209ENST00000504627 LINC01546A6NGU7 62 aa12.28□□□□□ -0.44
SQSTM1-209ENST00000504627 C5orf52A6NGY3 159 aa12.28□□□□□ -0.44
SQSTM1-209ENST00000504627 LINC00614P0C842 121 aa12.28□□□□□ -0.44
SQSTM1-209ENST00000504627 LINC00694P0DN24 101 aa12.28□□□□□ -0.44
SQSTM1-209ENST00000504627 NIT1Q86X76 327 aa12.28□□□□□ -0.44
SQSTM1-209ENST00000504627 URB1-AS1Q96HZ7 61 aa12.28□□□□□ -0.44
SQSTM1-209ENST00000504627 TRAV9-2A0A087WT02 112 aa12.27□□□□□ -0.45
SQSTM1-209ENST00000504627 VCYO14598 125 aa12.27□□□□□ -0.45
SQSTM1-209ENST00000504627 TCAPO15273 167 aa12.27□□□□□ -0.45
SQSTM1-209ENST00000504627 HSBP1O75506 76 aa12.27□□□□□ -0.45
SQSTM1-209ENST00000504627 KIR2DL4Q99706 377 aa12.26□□□□□ -0.45
SQSTM1-209ENST00000504627 I3L3M4 83 aa12.25□□□□□ -0.45
SQSTM1-209ENST00000504627 CDK2AP2O75956 126 aa12.25□□□□□ -0.45
SQSTM1-209ENST00000504627 UBE2D3P61077 147 aa12.25□□□□□ -0.45
SQSTM1-209ENST00000504627 SNRPEP62304 92 aaKnown RBP12.25□□□□□ -0.45
SQSTM1-209ENST00000504627 UBE2D2P62837 147 aa12.25□□□□□ -0.45
SQSTM1-209ENST00000504627 Q9UF83 564 aa12.25□□□□□ -0.45
SQSTM1-209ENST00000504627 GAGE12JA6NER3 117 aa12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 EREGO14944 169 aa12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 HSPG2P98160 4391 aa12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 GAGE1Q13065 139 aa12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 GAGE4Q13068 117 aa12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 GAGE5Q13069 117 aa12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 GAGE13Q4V321 117 aa12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 DAZ4Q86SG3 579 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 NFE4Q86UQ8 179 aa12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 HIST3H2BBQ8N257 126 aa12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 DAZ3Q9NR90 486 aaKnown RBP12.24□□□□□ -0.45
SQSTM1-209ENST00000504627 LOC100131303A0A0U1RQF7 123 aa12.23□□□□□ -0.45
SQSTM1-209ENST00000504627 KRTAP10-2P60368 255 aa12.23□□□□□ -0.45
SQSTM1-209ENST00000504627 LAGE3Q14657 143 aa12.23□□□□□ -0.45
SQSTM1-209ENST00000504627 ORMDL2Q53FV1 153 aa12.23□□□□□ -0.45
SQSTM1-209ENST00000504627 SH2D6Q7Z4S9 175 aa12.23□□□□□ -0.45
SQSTM1-209ENST00000504627 WFDC10BQ8IUB3 73 aa12.23□□□□□ -0.45
SQSTM1-209ENST00000504627 ABCA13Q86UQ4 5058 aa12.23□□□□□ -0.45
SQSTM1-209ENST00000504627 DNAH5Q8TE73 4624 aa12.23□□□□□ -0.45
SQSTM1-209ENST00000504627 NUPR1O60356 82 aa12.22□□□□□ -0.45
SQSTM1-209ENST00000504627 S100A2P29034 98 aa12.22□□□□□ -0.45
SQSTM1-209ENST00000504627 AMTP48728 403 aa12.22□□□□□ -0.45
SQSTM1-209ENST00000504627 Q6ZRN7 208 aaPredicted RBP12.22□□□□□ -0.45
SQSTM1-209ENST00000504627 PACRGQ96M98 296 aaPredicted RBP12.22□□□□□ -0.45
SQSTM1-209ENST00000504627 IGHV1-24A0A0C4DH33 117 aa12.21□□□□□ -0.45
SQSTM1-209ENST00000504627 TSHBP01222 138 aa12.21□□□□□ -0.45
SQSTM1-209ENST00000504627 FCER1GP30273 86 aa12.21□□□□□ -0.45
SQSTM1-209ENST00000504627 COTL1Q14019 142 aa12.21□□□□□ -0.45
SQSTM1-209ENST00000504627 MAPKAPK5-AS1Q8N8E1 139 aa12.21□□□□□ -0.45
SQSTM1-209ENST00000504627 K7EP13 123 aa12.2□□□□□ -0.46
SQSTM1-209ENST00000504627 HBDP02042 147 aa12.2□□□□□ -0.46
SQSTM1-209ENST00000504627 TMEM97Q5BJF2 176 aa12.2□□□□□ -0.46
SQSTM1-209ENST00000504627 PDZD11Q5EBL8 140 aa12.2□□□□□ -0.46
SQSTM1-209ENST00000504627 TMEM18Q96B42 140 aa12.2□□□□□ -0.46
SQSTM1-209ENST00000504627 DNAH10OSP0CZ25 163 aa12.19□□□□□ -0.46
SQSTM1-209ENST00000504627 G0S2P27469 103 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms