RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 TEX48A0A1B0GUV7 120 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 GAGE12BA1L429 117 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 GAGE7O76087 117 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 PRB2P02812 416 aaPredicted RBP7.35□□□□□ -1.23
HDAC3-214ENST00000495485 GAGE12FP0CL80 117 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 GAGE12GP0CL81 117 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 GAGE12IP0CL82 117 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 TMEM97Q5BJF2 176 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 DAZ4Q86SG3 579 aaKnown RBP7.35□□□□□ -1.23
HDAC3-214ENST00000495485 MRPL52Q86TS9 123 aaKnown RBP7.35□□□□□ -1.23
HDAC3-214ENST00000495485 ATOH7Q8N100 152 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 NEXN-AS1Q8NBZ9 246 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 ZMAT4Q9H898 229 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 DAZ3Q9NR90 486 aaKnown RBP7.35□□□□□ -1.23
HDAC3-214ENST00000495485 TP53TG1Q9Y2A0 90 aa7.35□□□□□ -1.23
HDAC3-214ENST00000495485 TRBV6-4A0A1B0GX49 114 aa7.34□□□□□ -1.23
HDAC3-214ENST00000495485 CRYBA4P53673 196 aa7.34□□□□□ -1.23
HDAC3-214ENST00000495485 SPATA25Q9BR10 227 aa7.34□□□□□ -1.23
HDAC3-214ENST00000495485 F8VRH5 84 aa7.33□□□□□ -1.24
HDAC3-214ENST00000495485 TSHBP01222 138 aa7.33□□□□□ -1.24
HDAC3-214ENST00000495485 ODF1Q14990 250 aa7.33□□□□□ -1.24
HDAC3-214ENST00000495485 PMVKQ15126 192 aa7.33□□□□□ -1.24
HDAC3-214ENST00000495485 C20orf203Q8NBC4 194 aa7.33□□□□□ -1.24
HDAC3-214ENST00000495485 OR11H2Q8NH07 326 aa7.33□□□□□ -1.24
HDAC3-214ENST00000495485 ZNRF2Q8NHG8 242 aa7.33□□□□□ -1.24
HDAC3-214ENST00000495485 ZNF479Q96JC4 524 aa7.33□□□□□ -1.24
HDAC3-214ENST00000495485 CHTOPQ9Y3Y2 248 aaKnown RBP7.33□□□□□ -1.24
HDAC3-214ENST00000495485 PYGO1Q9Y3Y4 419 aa7.33□□□□□ -1.24
HDAC3-214ENST00000495485 PLAC8L1A1L4L8 177 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 LINC00587B1AMM8 73 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 IGLC3P0DOY3 106 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 EMP1P54849 157 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 LBHQ53QV2 105 aaPredicted RBP7.32□□□□□ -1.24
HDAC3-214ENST00000495485 SLC25A34Q6PIV7 304 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 NEGR1Q7Z3B1 354 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 RNF183Q96D59 192 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 TM2D3Q9BRN9 247 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 SPANXA1Q9NS26 97 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 X6R8D5 127 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 NACAE9PAV3 2078 aa7.32□□□□□ -1.24
HDAC3-214ENST00000495485 hDV102S1A0JD36 115 aa7.31□□□□□ -1.24
HDAC3-214ENST00000495485 HNRNPA3P51991 378 aaKnown RBP7.31□□□□□ -1.24
HDAC3-214ENST00000495485 HERVK_113P61574 105 aa7.31□□□□□ -1.24
HDAC3-214ENST00000495485 DEFB135Q30KP9 77 aa7.31□□□□□ -1.24
HDAC3-214ENST00000495485 BAALCQ8WXS3 180 aa7.31□□□□□ -1.24
HDAC3-214ENST00000495485 GTSF1LQ9H1H1 148 aa7.31□□□□□ -1.24
HDAC3-214ENST00000495485 VCX2Q9H322 139 aa7.31□□□□□ -1.24
HDAC3-214ENST00000495485 IGIPA6NJ69 53 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 SPART-AS1P0CW21 52 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 P0DMU3 169 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 FAM231AP0DMU4 169 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 FAM231CP0DMU5 169 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 DEFB130BP0DP73 79 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 DEFB130AP0DP74 79 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 DGAT2L7PQ6IED9 249 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 LINC00612Q8N6U2 182 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 SLC25A29Q8N8R3 303 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 TIMM21Q9BVV7 248 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 DKK2Q9UBU2 259 aa7.3□□□□□ -1.24
HDAC3-214ENST00000495485 PRSS29PA6NIE9 313 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 H7C423 109 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 M0R143 59 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 COX8AP10176 69 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 DAD1P61803 113 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 RPL39P62891 51 aaKnown RBP7.29□□□□□ -1.24
HDAC3-214ENST00000495485 Q6ZSN1 163 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 SBSPONQ8IVN8 264 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 C14orf144Q96I85 54 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 C2orf88Q9BSF0 95 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 MRPL35Q9NZE8 188 aaKnown RBP7.29□□□□□ -1.24
HDAC3-214ENST00000495485 PRO0255Q9UI72 69 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 HHLA3Q9XRX5 114 aa7.29□□□□□ -1.24
HDAC3-214ENST00000495485 MRPS16Q9Y3D3 137 aaKnown RBP7.29□□□□□ -1.24
HDAC3-214ENST00000495485 GAGE12JA6NER3 117 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 UBE2L6O14933 153 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 SIVA1O15304 175 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 DLEU1O43261 78 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 UBE2D3P61077 147 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 UBE2D2P62837 147 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 GAGE1Q13065 139 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 GAGE4Q13068 117 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 GAGE5Q13069 117 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 FHL2Q14192 279 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 MAJINQ3KP22 176 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 GAGE13Q4V321 117 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 ZC2HC1BQ5TFG8 222 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 FAM222AQ5U5X8 452 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 PHLDA1Q8WV24 401 aaPredicted RBP7.28□□□□□ -1.24
HDAC3-214ENST00000495485 TMEM101Q96IK0 257 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 CST9LQ9H4G1 147 aa7.28□□□□□ -1.24
HDAC3-214ENST00000495485 TRBV25-1A0A075B6N4 114 aa7.27□□□□□ -1.25
HDAC3-214ENST00000495485 IGHV4-28A0A0C4DH34 117 aa7.27□□□□□ -1.25
HDAC3-214ENST00000495485 ATP5G1P05496 136 aa7.27□□□□□ -1.25
HDAC3-214ENST00000495485 SEC11AP67812 179 aa7.27□□□□□ -1.25
HDAC3-214ENST00000495485 SH2D6Q7Z4S9 175 aa7.27□□□□□ -1.25
HDAC3-214ENST00000495485 CSDC2Q9Y534 153 aaKnown RBP7.27□□□□□ -1.25
HDAC3-214ENST00000495485 NMUP48645 174 aa7.26□□□□□ -1.25
HDAC3-214ENST00000495485 MRPS36P82909 103 aaKnown RBP7.26□□□□□ -1.25
HDAC3-214ENST00000495485 AMMECR1LQ6DCA0 310 aa7.26□□□□□ -1.25
HDAC3-214ENST00000495485 STPG4Q8N801 248 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms