RNA–Protein interactions for RNA: ENST00000492954.1

PTPRU-207, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 2

Gene PTPRU, Length 625 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-207ENST00000492954 COTL1Q14019 142 aa11.74□□□□□ -0.53
PTPRU-207ENST00000492954 FAM231DQ6ZW35 169 aa11.74□□□□□ -0.53
PTPRU-207ENST00000492954 IGLV4-60A0A075B6I1 120 aa11.73□□□□□ -0.53
PTPRU-207ENST00000492954 A8MWL6 223 aa11.73□□□□□ -0.53
PTPRU-207ENST00000492954 AMTP48728 403 aa11.73□□□□□ -0.53
PTPRU-207ENST00000492954 REG3AQ06141 175 aa11.73□□□□□ -0.53
PTPRU-207ENST00000492954 SMIM7Q9BQ49 75 aa11.73□□□□□ -0.53
PTPRU-207ENST00000492954 GFRA4Q9GZZ7 299 aa11.73□□□□□ -0.53
PTPRU-207ENST00000492954 DMBT1Q9UGM3 2413 aaPredicted RBP11.73□□□□□ -0.53
PTPRU-207ENST00000492954 IGLV10-54A0A075B6I4 117 aa11.72□□□□□ -0.53
PTPRU-207ENST00000492954 SCXQ7RTU7 201 aa11.72□□□□□ -0.53
PTPRU-207ENST00000492954 SMIM15Q7Z3B0 74 aa11.72□□□□□ -0.53
PTPRU-207ENST00000492954 RPL39LQ96EH5 51 aaKnown RBP11.72□□□□□ -0.53
PTPRU-207ENST00000492954 FAM210AQ96ND0 272 aa11.72□□□□□ -0.53
PTPRU-207ENST00000492954 A0A1B0GUV1 79 aa11.71□□□□□ -0.53
PTPRU-207ENST00000492954 UBE2L6O14933 153 aa11.71□□□□□ -0.53
PTPRU-207ENST00000492954 PRSS1P07477 247 aa11.71□□□□□ -0.53
PTPRU-207ENST00000492954 CT83Q5H943 113 aa11.71□□□□□ -0.53
PTPRU-207ENST00000492954 LINC01551Q86U37 167 aa11.71□□□□□ -0.53
PTPRU-207ENST00000492954 LINC00528Q8N1L1 170 aa11.71□□□□□ -0.53
PTPRU-207ENST00000492954 NDUFS6O75380 124 aaKnown RBP11.7□□□□□ -0.54
PTPRU-207ENST00000492954 CHAC1Q9BUX1 264 aa11.7□□□□□ -0.54
PTPRU-207ENST00000492954 ZNF727A8MUV8 499 aa11.69□□□□□ -0.54
PTPRU-207ENST00000492954 SRP19P09132 144 aaKnown RBP11.69□□□□□ -0.54
PTPRU-207ENST00000492954 HERC1Q15751 4861 aa11.69□□□□□ -0.54
PTPRU-207ENST00000492954 CIRBP-AS1Q8TBR5 109 aa11.68□□□□□ -0.54
PTPRU-207ENST00000492954 TRAV8-4A0A0B4J246 113 aa11.67□□□□□ -0.54
PTPRU-207ENST00000492954 HIGD1CA8MV81 97 aa11.67□□□□□ -0.54
PTPRU-207ENST00000492954 PLA2G1BP04054 148 aaKnown RBP11.67□□□□□ -0.54
PTPRU-207ENST00000492954 TEX261Q6UWH6 196 aa11.67□□□□□ -0.54
PTPRU-207ENST00000492954 TSKUQ8WUA8 353 aa11.67□□□□□ -0.54
PTPRU-207ENST00000492954 BORCS7Q96B45 105 aa11.67□□□□□ -0.54
PTPRU-207ENST00000492954 OSTCQ9NRP0 149 aa11.66□□□□□ -0.54
PTPRU-207ENST00000492954 A0A1B0GUT8 65 aa11.65□□□□□ -0.54
PTPRU-207ENST00000492954 SDHAF1A6NFY7 115 aa11.65□□□□□ -0.54
PTPRU-207ENST00000492954 GAS8-AS1O95177 125 aa11.65□□□□□ -0.54
PTPRU-207ENST00000492954 NCR2O95944 276 aa11.65□□□□□ -0.54
PTPRU-207ENST00000492954 DGAT2L7PQ6IED9 249 aa11.65□□□□□ -0.54
PTPRU-207ENST00000492954 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.64□□□□□ -0.55
PTPRU-207ENST00000492954 IGKV2-29A2NJV5 120 aaPredicted RBP11.64□□□□□ -0.55
PTPRU-207ENST00000492954 APCSP02743 223 aa11.64□□□□□ -0.55
PTPRU-207ENST00000492954 IGKV3OR2-268A0A0C4DH90 116 aa11.63□□□□□ -0.55
PTPRU-207ENST00000492954 TRBV6-5A0A0K0K1A5 114 aa11.63□□□□□ -0.55
PTPRU-207ENST00000492954 AMMECR1LQ6DCA0 310 aa11.63□□□□□ -0.55
PTPRU-207ENST00000492954 C9orf163Q8N9P6 203 aa11.63□□□□□ -0.55
PTPRU-207ENST00000492954 CLRN3Q8NCR9 226 aa11.63□□□□□ -0.55
PTPRU-207ENST00000492954 V9GYV3 84 aa11.63□□□□□ -0.55
PTPRU-207ENST00000492954 hDV102S1A0JD36 115 aa11.62□□□□□ -0.55
PTPRU-207ENST00000492954 FAM231BA6NCW3 169 aa11.62□□□□□ -0.55
PTPRU-207ENST00000492954 C9JQL5 133 aa11.62□□□□□ -0.55
PTPRU-207ENST00000492954 PMCHP20382 165 aa11.62□□□□□ -0.55
PTPRU-207ENST00000492954 TMEM241Q24JQ0 296 aa11.62□□□□□ -0.55
PTPRU-207ENST00000492954 RNASEKQ6P5S7 137 aaKnown RBP11.62□□□□□ -0.55
PTPRU-207ENST00000492954 ISOC2Q96AB3 205 aa11.62□□□□□ -0.55
PTPRU-207ENST00000492954 RNF185Q96GF1 192 aa11.62□□□□□ -0.55
PTPRU-207ENST00000492954 TMEM191AQ9H0A3 160 aa11.62□□□□□ -0.55
PTPRU-207ENST00000492954 I3L3M4 83 aa11.61□□□□□ -0.55
PTPRU-207ENST00000492954 RPL23P62829 140 aaKnown RBP11.61□□□□□ -0.55
PTPRU-207ENST00000492954 ST20Q9HBF5 79 aa11.61□□□□□ -0.55
PTPRU-207ENST00000492954 GAGE12HA6NDE8 117 aa11.6□□□□□ -0.55
PTPRU-207ENST00000492954 H7C423 109 aa11.6□□□□□ -0.55
PTPRU-207ENST00000492954 FGF6P10767 208 aa11.6□□□□□ -0.55
PTPRU-207ENST00000492954 RAB4AP20338 218 aa11.6□□□□□ -0.55
PTPRU-207ENST00000492954 RPS10P46783 165 aaKnown RBP11.6□□□□□ -0.55
PTPRU-207ENST00000492954 SRSF3P84103 164 aaKnown RBP11.6□□□□□ -0.55
PTPRU-207ENST00000492954 FAM74A3Q4VXF1 159 aa11.6□□□□□ -0.55
PTPRU-207ENST00000492954 AMN1Q8IY45 258 aa11.6□□□□□ -0.55
PTPRU-207ENST00000492954 NUP35Q8NFH5 326 aa11.6□□□□□ -0.55
PTPRU-207ENST00000492954 TSHBP01222 138 aa11.59□□□□□ -0.55
PTPRU-207ENST00000492954 CNBPP62633 177 aaKnown RBP11.59□□□□□ -0.55
PTPRU-207ENST00000492954 ADIRFQ15847 76 aa11.59□□□□□ -0.55
PTPRU-207ENST00000492954 TMEM242Q9NWH2 141 aa11.59□□□□□ -0.55
PTPRU-207ENST00000492954 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.59□□□□□ -0.55
PTPRU-207ENST00000492954 PANO1I0J062 215 aa11.58□□□□□ -0.56
PTPRU-207ENST00000492954 SLPIP03973 132 aa11.58□□□□□ -0.56
PTPRU-207ENST00000492954 KRTAP10-4P60372 401 aaPredicted RBP11.58□□□□□ -0.56
PTPRU-207ENST00000492954 RIGQ13278 110 aa11.58□□□□□ -0.56
PTPRU-207ENST00000492954 SDIM1Q6ZPB5 146 aa11.58□□□□□ -0.56
PTPRU-207ENST00000492954 MRAP2Q96G30 205 aa11.58□□□□□ -0.56
PTPRU-207ENST00000492954 SMKR1H3BMG3 65 aa11.57□□□□□ -0.56
PTPRU-207ENST00000492954 ESDP10768 282 aa11.57□□□□□ -0.56
PTPRU-207ENST00000492954 POLR2KP53803 58 aaKnown RBP11.57□□□□□ -0.56
PTPRU-207ENST00000492954 C15orf56Q8N910 161 aa11.57□□□□□ -0.56
PTPRU-207ENST00000492954 CHCHD10Q8WYQ3 142 aaPredicted RBP11.57□□□□□ -0.56
PTPRU-207ENST00000492954 AP5S1Q9NUS5 200 aa11.57□□□□□ -0.56
PTPRU-207ENST00000492954 NAT8Q9UHE5 227 aa11.57□□□□□ -0.56
PTPRU-207ENST00000492954 NAT8BQ9UHF3 227 aa11.57□□□□□ -0.56
PTPRU-207ENST00000492954 ZNF25P17030 456 aaPredicted RBP11.56□□□□□ -0.56
PTPRU-207ENST00000492954 PEA15Q15121 130 aa11.56□□□□□ -0.56
PTPRU-207ENST00000492954 CFAP161Q6P656 301 aa11.55□□□□□ -0.56
PTPRU-207ENST00000492954 BTF3L4Q96K17 158 aa11.55□□□□□ -0.56
PTPRU-207ENST00000492954 TRBV27A0A0K0K1C4 114 aa11.54□□□□□ -0.56
PTPRU-207ENST00000492954 SMIM27A0A1W2PRY6 76 aa11.54□□□□□ -0.56
PTPRU-207ENST00000492954 HIGD2BQ4VC39 106 aa11.54□□□□□ -0.56
PTPRU-207ENST00000492954 OR5A1Q8NGJ0 315 aa11.54□□□□□ -0.56
PTPRU-207ENST00000492954 TMEM101Q96IK0 257 aa11.54□□□□□ -0.56
PTPRU-207ENST00000492954 IGHV3-64A0A075B6Q5 118 aa11.53□□□□□ -0.56
PTPRU-207ENST00000492954 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.53□□□□□ -0.56
PTPRU-207ENST00000492954 J3QL48 77 aa11.53□□□□□ -0.56
PTPRU-207ENST00000492954 NRACQ8N912 160 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms